BLASTX nr result
ID: Coptis25_contig00008344
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00008344
(1461 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis ... 236 1e-59
emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera] 235 2e-59
ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|2... 229 1e-57
dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis ... 225 3e-56
ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana... 225 3e-56
>ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis vinifera]
gi|296090242|emb|CBI40061.3| unnamed protein product
[Vitis vinifera]
Length = 258
Score = 236 bits (602), Expect = 1e-59
Identities = 130/229 (56%), Positives = 157/229 (68%)
Frame = +2
Query: 425 TPTLGANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP 604
+P+L + S+ FL+E+RRGFA
Sbjct: 34 SPSLNPSASSA-----LDFLRESRRGFAKGRKSKDSDAGNTVEVVPDIGPA--------- 79
Query: 605 IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXX 784
+K A+SQM+AA+VALSRELSK++TGRASAG++DHIIVETGG KMPLSR+A
Sbjct: 80 VKENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKT 139
Query: 785 XXXTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 964
TPYD +A K++E AI+SSPLGLNP+ DG+RLI I PLTKE IQAMCKVV KS +DV
Sbjct: 140 LSVTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDV 199
Query: 965 KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 1111
KQSIRRARQKA D+IKKA SS+PKD KRLEKEVD+LTKK++KSAEDMC
Sbjct: 200 KQSIRRARQKALDMIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMC 248
>emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera]
Length = 258
Score = 235 bits (600), Expect = 2e-59
Identities = 130/229 (56%), Positives = 156/229 (68%)
Frame = +2
Query: 425 TPTLGANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP 604
+P+L + S+ FL+E+RRGFA
Sbjct: 34 SPSLNPSASSA-----LDFLRESRRGFAKGRKSKDSDAGNTVEVVPDIGPA--------- 79
Query: 605 IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXX 784
+K A+SQM+AA+VALSRELSK++TGRASAG++DHIIVETGG KMPLSR+A
Sbjct: 80 VKENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKT 139
Query: 785 XXXTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 964
TPYD +A K++E AI+SSPLGLNP+ DG+RLI I PLTKE IQAMCKVV KS +DV
Sbjct: 140 LSVTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDV 199
Query: 965 KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 1111
KQSIRRARQKA D IKKA SS+PKD KRLEKEVD+LTKK++KSAEDMC
Sbjct: 200 KQSIRRARQKALDXIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMC 248
>ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|222845864|gb|EEE83411.1|
predicted protein [Populus trichocarpa]
Length = 273
Score = 229 bits (584), Expect = 1e-57
Identities = 123/224 (54%), Positives = 149/224 (66%)
Frame = +2
Query: 440 ANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIKPTA 619
++K S L F FLK++RRGFA +K TA
Sbjct: 49 SHKLPSATLPSFDFLKQSRRGFAKGKNKSKDDSAGGTVEFVDIGPT---------VKETA 99
Query: 620 ISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXXXXXTP 799
SQM+AA+VALSREL K++TGRASAG++DHIIVET G K+PL+R A P
Sbjct: 100 NSQMDAAVVALSRELQKLRTGRASAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLSVNP 159
Query: 800 YDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDVKQSIR 979
YDPN K++E AI+SSPLGLNPQ DG RLI AI PLTKE QAMCKVV KS +D +QSIR
Sbjct: 160 YDPNTLKQLENAIVSSPLGLNPQRDGDRLIAAIPPLTKEHTQAMCKVVAKSCEDCRQSIR 219
Query: 980 RARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 1111
RARQKA D +KKA SS PKDD K+LEKE++++TKK++KSAEDMC
Sbjct: 220 RARQKAMDTVKKAGSSFPKDDAKKLEKEIEEMTKKFVKSAEDMC 263
>dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana]
Length = 267
Score = 225 bits (573), Expect = 3e-56
Identities = 110/169 (65%), Positives = 139/169 (82%)
Frame = +2
Query: 605 IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXX 784
+K A SQMEAA+ ALSR+L+K++TGRA+ G++DHI+VETGG KMPL+ +A
Sbjct: 89 VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148
Query: 785 XXXTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 964
PYDP+ KE+E+AI++SPLGLNP++DGQRL+ +I LTKE IQAMCK+VTKS++ V
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208
Query: 965 KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 1111
KQSIRRARQKA D IKKA SS+PKD+VKRLEKEVD+LTKK++KSAEDMC
Sbjct: 209 KQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMC 257
>ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana]
gi|34146850|gb|AAQ62433.1| At3g01800 [Arabidopsis
thaliana] gi|51970776|dbj|BAD44080.1| putative ribosome
recycling factor [Arabidopsis thaliana]
gi|62319213|dbj|BAD94407.1| putative ribosome recycling
factor [Arabidopsis thaliana] gi|332640195|gb|AEE73716.1|
ribosome recycling factor [Arabidopsis thaliana]
Length = 267
Score = 225 bits (573), Expect = 3e-56
Identities = 110/169 (65%), Positives = 139/169 (82%)
Frame = +2
Query: 605 IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXX 784
+K A SQMEAA+ ALSR+L+K++TGRA+ G++DHI+VETGG KMPL+ +A
Sbjct: 89 VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148
Query: 785 XXXTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 964
PYDP+ KE+E+AI++SPLGLNP++DGQRL+ +I LTKE IQAMCK+VTKS++ V
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208
Query: 965 KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 1111
KQSIRRARQKA D IKKA SS+PKD+VKRLEKEVD+LTKK++KSAEDMC
Sbjct: 209 KQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMC 257