BLASTX nr result

ID: Coptis25_contig00008285 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008285
         (200 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527682.1| 3-5 exonuclease, putative [Ricinus communis]...    77   1e-12
ref|XP_002323207.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
ref|XP_002308852.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
ref|XP_004136636.1| PREDICTED: Werner Syndrome-like exonuclease-...    74   9e-12
gb|ADN33882.1| 3'-5' exonuclease [Cucumis melo subsp. melo]            74   9e-12

>ref|XP_002527682.1| 3-5 exonuclease, putative [Ricinus communis]
           gi|223532913|gb|EEF34681.1| 3-5 exonuclease, putative
           [Ricinus communis]
          Length = 211

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 33/67 (49%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
 Frame = +2

Query: 2   YNLGVANILDLRSLAMGK-GFGHLRNSGLKDLAREIVGLVIEKPKRITMSRWDYEWLSYE 178
           Y L V N+++LR +A    G   L+N+GLK+L ++++G  I+KPKR+TMSRWD  WLS++
Sbjct: 128 YGLSVGNVMELRRVAAESLGVKELKNAGLKELVKQVLGKEIQKPKRVTMSRWDSMWLSHD 187

Query: 179 QISYACV 199
           Q+ YAC+
Sbjct: 188 QVQYACL 194


>ref|XP_002323207.1| predicted protein [Populus trichocarpa] gi|222867837|gb|EEF04968.1|
           predicted protein [Populus trichocarpa]
          Length = 215

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = +2

Query: 2   YNLGVANILDLRSLAMGK-GFGHLRNSGLKDLAREIVGLVIEKPKRITMSRWDYEWLSYE 178
           Y L V N +DLR LA  K G    +NSG+K LARE++G  IEKPKRIT+SRWD  WL+  
Sbjct: 134 YELSVGNAVDLRGLAAEKLGDSRWKNSGVKRLAREVLGKEIEKPKRITLSRWDNPWLTPA 193

Query: 179 QISYACV 199
           Q+ YAC+
Sbjct: 194 QVQYACL 200


>ref|XP_002308852.1| predicted protein [Populus trichocarpa] gi|222854828|gb|EEE92375.1|
           predicted protein [Populus trichocarpa]
          Length = 215

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
 Frame = +2

Query: 2   YNLGVANILDLRSLAMGK-GFGHLRNSGLKDLAREIVGLVIEKPKRITMSRWDYEWLSYE 178
           Y++ + N +DLR LA  K G    +NSG+K L +EI+G  IEKPKR+TMSRWD EWL+ +
Sbjct: 134 YDVSMGNAVDLRVLAAEKLGAEQWKNSGIKSLVKEILGKQIEKPKRVTMSRWDNEWLTGD 193

Query: 179 QISYACV 199
           Q+ YAC+
Sbjct: 194 QVQYACL 200


>ref|XP_004136636.1| PREDICTED: Werner Syndrome-like exonuclease-like [Cucumis sativus]
           gi|449506001|ref|XP_004162625.1| PREDICTED: Werner
           Syndrome-like exonuclease-like [Cucumis sativus]
          Length = 209

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
 Frame = +2

Query: 2   YNLGVANILDLRSLAMG-KGFGHLRNSGLKDLAREIVGLVIEKPKRITMSRWDYEWLSYE 178
           Y L V   +DLR LA    G G L+N+GLK L +E++G  I KPK +TMSRWD EWL+  
Sbjct: 126 YGLKVGKRMDLRDLAESVTGRGELKNAGLKRLGKEVLGKEIHKPKSVTMSRWDQEWLTLN 185

Query: 179 QISYACV 199
           Q+ YAC+
Sbjct: 186 QVKYACI 192


>gb|ADN33882.1| 3'-5' exonuclease [Cucumis melo subsp. melo]
          Length = 209

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
 Frame = +2

Query: 2   YNLGVANILDLRSLAMG-KGFGHLRNSGLKDLAREIVGLVIEKPKRITMSRWDYEWLSYE 178
           Y L V   +DLR LA    G G L+N+GLK L +E++G  I KPK +TMSRWD EWL+  
Sbjct: 126 YGLKVGKRMDLRDLAESVTGRGELKNAGLKRLGKEVLGKEIHKPKSVTMSRWDQEWLTLN 185

Query: 179 QISYACV 199
           Q+ YAC+
Sbjct: 186 QVKYACI 192


Top