BLASTX nr result
ID: Coptis25_contig00008280
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00008280
(696 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002302896.1| predicted protein [Populus trichocarpa] gi|2... 242 6e-62
ref|XP_002526268.1| nucleotide binding protein, putative [Ricinu... 240 2e-61
ref|XP_003552655.1| PREDICTED: uncharacterized WD repeat-contain... 238 7e-61
ref|XP_003518673.1| PREDICTED: uncharacterized WD repeat-contain... 238 7e-61
gb|AFX67015.1| WD-repeat protein, partial [Solanum tuberosum] 237 2e-60
>ref|XP_002302896.1| predicted protein [Populus trichocarpa] gi|222844622|gb|EEE82169.1|
predicted protein [Populus trichocarpa]
Length = 401
Score = 242 bits (617), Expect = 6e-62
Identities = 111/135 (82%), Positives = 124/135 (91%)
Frame = +1
Query: 292 TVSPLVGHLDYSFASAWHPDGNTFATGNQDKTCRMWDIRNLSAPTAVLKGNLGAVRSIHF 471
TVS + GHLDYSFASAWHPDGN FATGNQDKTCR+WDIR LS+PTA+LKGNLGAVRSI F
Sbjct: 265 TVSTVEGHLDYSFASAWHPDGNVFATGNQDKTCRVWDIRKLSSPTAILKGNLGAVRSICF 324
Query: 472 SADGQFMAVAEPADFVHIYSTKADYKKRQEIDFFGEISGVSLSPDDESLFIGVWDRTYAS 651
S+DGQFM VAEPADFVH+YST+ DY++RQEIDFFGEISGV+LSPDDESL+IG+WDRTYAS
Sbjct: 325 SSDGQFMYVAEPADFVHVYSTQDDYRRRQEIDFFGEISGVALSPDDESLYIGIWDRTYAS 384
Query: 652 LLHYGKKHVYSYLDS 696
LL Y K+H Y YLDS
Sbjct: 385 LLQYNKRHTYGYLDS 399
Score = 86.7 bits (213), Expect = 4e-15
Identities = 35/51 (68%), Positives = 46/51 (90%)
Frame = +2
Query: 2 DDNSITNSIDIYNTLSGGVHFMASNNDSGIREFDAETFQLSNYFRFPWPVN 154
DDN+ITN+I+IY+++ GG+ FM+SNND G+RE+D ETFQL N+FRFPWPVN
Sbjct: 185 DDNAITNAIEIYDSMRGGIRFMSSNNDGGLREYDLETFQLLNHFRFPWPVN 235
>ref|XP_002526268.1| nucleotide binding protein, putative [Ricinus communis]
gi|223534413|gb|EEF36118.1| nucleotide binding protein,
putative [Ricinus communis]
Length = 196
Score = 240 bits (612), Expect = 2e-61
Identities = 109/135 (80%), Positives = 124/135 (91%)
Frame = +1
Query: 292 TVSPLVGHLDYSFASAWHPDGNTFATGNQDKTCRMWDIRNLSAPTAVLKGNLGAVRSIHF 471
TV+ + GHLD+SFA+AWHPDG+ FATGNQDKTCR+WDIRNLS+ A+LKGNLGAVRSI F
Sbjct: 60 TVATVKGHLDFSFATAWHPDGHVFATGNQDKTCRVWDIRNLSSSIAILKGNLGAVRSIRF 119
Query: 472 SADGQFMAVAEPADFVHIYSTKADYKKRQEIDFFGEISGVSLSPDDESLFIGVWDRTYAS 651
S+DGQFM VAEPADFVH+YSTKADYK+RQEIDFFGEISGV+LSPDDESL+IG+WDRTYAS
Sbjct: 120 SSDGQFMVVAEPADFVHVYSTKADYKRRQEIDFFGEISGVALSPDDESLYIGIWDRTYAS 179
Query: 652 LLHYGKKHVYSYLDS 696
LL Y K+H Y YLDS
Sbjct: 180 LLQYNKRHTYGYLDS 194
>ref|XP_003552655.1| PREDICTED: uncharacterized WD repeat-containing protein
C2A9.03-like [Glycine max]
Length = 440
Score = 238 bits (608), Expect = 7e-61
Identities = 107/135 (79%), Positives = 122/135 (90%)
Frame = +1
Query: 292 TVSPLVGHLDYSFASAWHPDGNTFATGNQDKTCRMWDIRNLSAPTAVLKGNLGAVRSIHF 471
TV+ VGH DYSFASAWHPDG TFATGNQDKTCR+WD+R+LS+PTA+LK NLGA RSI F
Sbjct: 305 TVATFVGHRDYSFASAWHPDGRTFATGNQDKTCRVWDVRHLSSPTAILKNNLGATRSIRF 364
Query: 472 SADGQFMAVAEPADFVHIYSTKADYKKRQEIDFFGEISGVSLSPDDESLFIGVWDRTYAS 651
S+DGQ+M VAEPADFVH+YSTKADY+KRQEIDFFGEISGVSLSPDDE ++IG+WDRTYAS
Sbjct: 365 SSDGQYMVVAEPADFVHVYSTKADYRKRQEIDFFGEISGVSLSPDDECIYIGIWDRTYAS 424
Query: 652 LLHYGKKHVYSYLDS 696
LL Y +KH Y YLD+
Sbjct: 425 LLQYNRKHQYKYLDA 439
Score = 73.6 bits (179), Expect = 4e-11
Identities = 30/51 (58%), Positives = 41/51 (80%)
Frame = +2
Query: 2 DDNSITNSIDIYNTLSGGVHFMASNNDSGIREFDAETFQLSNYFRFPWPVN 154
DDN+I+N+++IY++LSG H +ASNND G+RE+D E FQ N F+F WPVN
Sbjct: 225 DDNAISNAVEIYDSLSGATHIIASNNDCGVREYDTERFQPLNNFQFSWPVN 275
>ref|XP_003518673.1| PREDICTED: uncharacterized WD repeat-containing protein
C2A9.03-like [Glycine max]
Length = 402
Score = 238 bits (608), Expect = 7e-61
Identities = 108/135 (80%), Positives = 123/135 (91%)
Frame = +1
Query: 292 TVSPLVGHLDYSFASAWHPDGNTFATGNQDKTCRMWDIRNLSAPTAVLKGNLGAVRSIHF 471
TV+ LVGH DYSFASAWHPDG TFATGNQDKTCR+WD+R+LS+PTA+LK NLGA RSI F
Sbjct: 266 TVANLVGHRDYSFASAWHPDGCTFATGNQDKTCRVWDVRHLSSPTAILKNNLGATRSIRF 325
Query: 472 SADGQFMAVAEPADFVHIYSTKADYKKRQEIDFFGEISGVSLSPDDESLFIGVWDRTYAS 651
S+DGQ+M VAEPADFVH+YSTKADY+KRQEIDFFGEISGVSLSPDDE ++IG+WDRTYAS
Sbjct: 326 SSDGQYMVVAEPADFVHVYSTKADYRKRQEIDFFGEISGVSLSPDDECMYIGIWDRTYAS 385
Query: 652 LLHYGKKHVYSYLDS 696
LL Y +KH Y YLD+
Sbjct: 386 LLQYNRKHQYKYLDA 400
Score = 75.1 bits (183), Expect = 1e-11
Identities = 32/51 (62%), Positives = 40/51 (78%)
Frame = +2
Query: 2 DDNSITNSIDIYNTLSGGVHFMASNNDSGIREFDAETFQLSNYFRFPWPVN 154
DDN+ITN+I+IY +LSG H +ASNND G+RE+D E FQ N F+F WPVN
Sbjct: 186 DDNAITNAIEIYGSLSGATHIIASNNDCGVREYDTERFQPLNNFQFSWPVN 236
>gb|AFX67015.1| WD-repeat protein, partial [Solanum tuberosum]
Length = 312
Score = 237 bits (604), Expect = 2e-60
Identities = 108/135 (80%), Positives = 121/135 (89%)
Frame = +1
Query: 292 TVSPLVGHLDYSFASAWHPDGNTFATGNQDKTCRMWDIRNLSAPTAVLKGNLGAVRSIHF 471
TV+ +VGHLDYSFA AWHPDG TFATGNQDKTCR+WD+RNLS+ TA+LKGN+GA RSI F
Sbjct: 176 TVASIVGHLDYSFACAWHPDGRTFATGNQDKTCRIWDLRNLSSSTAILKGNIGAARSIRF 235
Query: 472 SADGQFMAVAEPADFVHIYSTKADYKKRQEIDFFGEISGVSLSPDDESLFIGVWDRTYAS 651
S+DGQF+ VAEPADFVHIYSTK+DYKKRQEID FGEISGVSLSPDDESL+IG+WDRTY S
Sbjct: 236 SSDGQFLVVAEPADFVHIYSTKSDYKKRQEIDLFGEISGVSLSPDDESLYIGIWDRTYGS 295
Query: 652 LLHYGKKHVYSYLDS 696
LL Y +KH YLDS
Sbjct: 296 LLEYNRKHTCRYLDS 310
Score = 74.7 bits (182), Expect = 2e-11
Identities = 30/51 (58%), Positives = 42/51 (82%)
Frame = +2
Query: 2 DDNSITNSIDIYNTLSGGVHFMASNNDSGIREFDAETFQLSNYFRFPWPVN 154
+DN+ITN+++IY ++S G+ FMA+NND G+R +D E FQ N+FRFPWPVN
Sbjct: 96 EDNAITNAVEIYESVSCGLRFMAANNDCGVRVYDMEKFQQMNHFRFPWPVN 146