BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008258
         (651 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28363.3| unnamed protein product [Vitis vinifera]              263   2e-68
ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containi...   263   2e-68
ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containi...   180   2e-43
ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [S...   177   2e-42
ref|NP_001047017.1| Os02g0529900 [Oryza sativa Japonica Group] g...   174   1e-41

>emb|CBI28363.3| unnamed protein product [Vitis vinifera]
          Length = 930

 Score =  263 bits (672), Expect = 2e-68
 Identities = 126/216 (58%), Positives = 162/216 (75%)
 Frame = +2

Query: 2    GWFEEALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVV 181
            G F EAL+LF++MQ   ++ NE+ +TSV+LACLALE+LRKGKE+HCKILR+GY SN SVV
Sbjct: 443  GCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELHCKILRSGYESNFSVV 502

Query: 182  NTLINLYSKLWHPQRALALCSLIPHGEIIWSFLIEACLRIKDHETIFNLLQMIQRSHGKL 361
            NTLINLYS+LW  ++AL LCS+IP  EI W+FLI ACL  +D+E I  LL  IQ SHG L
Sbjct: 503  NTLINLYSELWQHKQALKLCSMIPDSEISWNFLIRACLGAEDYEIIHKLLWRIQVSHGNL 562

Query: 362  DSATVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAF 541
            D  + C IF  C++  LLNVGTQ  AY+TKRG +S    +NSLI+MYS CG   +AV AF
Sbjct: 563  DPVSACDIFASCSSPVLLNVGTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAF 622

Query: 542  RSLPEKNSDSWTAVISANVDHGYPFKAIELFKQMCW 649
              +PEK++ SWT+++SA V+HG+P +A+ L  QM W
Sbjct: 623  NLMPEKDTCSWTSILSARVEHGHPSEALNLISQMRW 658



 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
 Frame = +2

Query: 62  NEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVVNTLINLYSKLWHPQRALALC 241
           + +++  VL AC  +E L  G+ +H  +++     +  V N L+++Y      + A  + 
Sbjct: 120 DSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVF 179

Query: 242 SLIPHGEII-WSFLIEACLRIKDHETIFNLLQMIQRSHGKLDSATVCYIFNFCANSCLLN 418
             I   +++ WS ++   ++    E    +   +     + D+     +   C N    +
Sbjct: 180 GGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWD 239

Query: 419 VGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAFRSLPEKNSDSWTAVISANV 598
            GTQ   Y+ K GF S +   NSL+  Y++CG +      F  + EKN  SW   I+  V
Sbjct: 240 FGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYV 299

Query: 599 DHGYPFKAIELFK 637
            + +  +A+ +F+
Sbjct: 300 HNFHYLEALRIFQ 312


>ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 906

 Score =  263 bits (672), Expect = 2e-68
 Identities = 126/216 (58%), Positives = 162/216 (75%)
 Frame = +2

Query: 2    GWFEEALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVV 181
            G F EAL+LF++MQ   ++ NE+ +TSV+LACLALE+LRKGKE+HCKILR+GY SN SVV
Sbjct: 419  GCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELHCKILRSGYESNFSVV 478

Query: 182  NTLINLYSKLWHPQRALALCSLIPHGEIIWSFLIEACLRIKDHETIFNLLQMIQRSHGKL 361
            NTLINLYS+LW  ++AL LCS+IP  EI W+FLI ACL  +D+E I  LL  IQ SHG L
Sbjct: 479  NTLINLYSELWQHKQALKLCSMIPDSEISWNFLIRACLGAEDYEIIHKLLWRIQVSHGNL 538

Query: 362  DSATVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAF 541
            D  + C IF  C++  LLNVGTQ  AY+TKRG +S    +NSLI+MYS CG   +AV AF
Sbjct: 539  DPVSACDIFASCSSPVLLNVGTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAF 598

Query: 542  RSLPEKNSDSWTAVISANVDHGYPFKAIELFKQMCW 649
              +PEK++ SWT+++SA V+HG+P +A+ L  QM W
Sbjct: 599  NLMPEKDTCSWTSILSARVEHGHPSEALNLISQMRW 634



 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
 Frame = +2

Query: 62  NEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVVNTLINLYSKLWHPQRALALC 241
           + +++  VL AC  +E L  G+ +H  +++     +  V N L+++Y      + A  + 
Sbjct: 61  DSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVF 120

Query: 242 SLIPHGEII-WSFLIEACLRIKDHETIFNLLQMIQRSHGKLDSATVCYIFNFCANSCLLN 418
             I   +++ WS ++   ++    E    +   +     + D+     +   C N    +
Sbjct: 121 GGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWD 180

Query: 419 VGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAFRSLPEKNSDSWTAVISANV 598
            GTQ   Y+ K GF S +   NSL+  Y++CG +      F  + EKN  SW   I+  V
Sbjct: 181 FGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYV 240

Query: 599 DHGYPFKAIELFK 637
            + +  +A+ +F+
Sbjct: 241 HNFHYLEALRIFQ 253


>ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like
            [Brachypodium distachyon]
          Length = 789

 Score =  180 bits (457), Expect = 2e-43
 Identities = 98/214 (45%), Positives = 131/214 (61%)
 Frame = +2

Query: 2    GWFEEALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVV 181
            G FE AL LF+RMQL  V  NE+ YTSVL AC+ L D+  G E+H   +R GYG++ SVV
Sbjct: 464  GQFERALHLFRRMQLDHVRPNEFTYTSVLTACIDLGDVVGGIEIHGNSVRNGYGTHASVV 523

Query: 182  NTLINLYSKLWHPQRALALCSLIPHGEIIWSFLIEACLRIKDHETIFNLLQMIQRSHGKL 361
             +LI+ Y +     +AL LC  + + EI W  L++   +  DH  + NL  +IQRS G L
Sbjct: 524  KSLISFYLREGQFHQALKLCLSLSNREISWDTLVKEFSQAGDHIGVLNLFHVIQRSGGVL 583

Query: 362  DSATVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAF 541
            D  T C+I   C    LL  G Q  AYLTKRG  S    ++ LI MYS+CG + DA  AF
Sbjct: 584  DYPTACHILTSCGKLKLLCEGLQAHAYLTKRGLASKPCISSHLIDMYSKCGTVKDAFDAF 643

Query: 542  RSLPEKNSDSWTAVISANVDHGYPFKAIELFKQM 643
            R + +KN+  WT+VI A++++G P  AI+LF QM
Sbjct: 644  RYMSDKNASCWTSVIIAHLENGCPEIAIDLFVQM 677



 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 54/211 (25%), Positives = 91/211 (43%)
 Frame = +2

Query: 11  EEALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVVNTL 190
           E+AL  F+ M     E +E+   S+L           G E+H  ++R G  S+  V++ L
Sbjct: 291 EQALSHFRAMMFEGSECDEFTLGSILHVVTRRGAFDYGMEIHGYLIRAGLDSDKHVMSAL 350

Query: 191 INLYSKLWHPQRALALCSLIPHGEIIWSFLIEACLRIKDHETIFNLLQMIQRSHGKLDSA 370
           +++Y                    + W+ L +A   +      ++LL       GK D  
Sbjct: 351 MDMY--------------------VNWATLHKAQCVLPLRMLRYHLLVQ-----GKFDQF 385

Query: 371 TVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAFRSL 550
            V      CA+   L  G    AY+ K    SD    +SL+ MY++CG + ++   F + 
Sbjct: 386 IVASSLRSCASDLDLAAGRMLHAYILKLNMNSDAFVTSSLVDMYAKCGCLEESHLLFSTT 445

Query: 551 PEKNSDSWTAVISANVDHGYPFKAIELFKQM 643
               +  W+AVIS N  +G   +A+ LF++M
Sbjct: 446 KYPGTAEWSAVISGNCLNGQFERALHLFRRM 476



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 6/216 (2%)
 Frame = +2

Query: 14  EALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGY-GSNISVVNTL 190
           EAL L  RM  +S+  + ++++  L AC A+   R G+++HC   + GY G+++ V N L
Sbjct: 89  EALVLLLRMMAWSLRPDGFVFSVALRACAAIGSQRFGRQLHCAAAKMGYVGADLFVANGL 148

Query: 191 INLYSKLWHPQRALALCSLIPHG-----EIIWSFLIEACLRIKDHETIFNLLQMIQRSHG 355
           + +Y+      R+L     + +G      + W+ ++        H     L   +  +  
Sbjct: 149 LTMYASC----RSLGCAEKVFNGIATPDLVSWTSMLSGYTENGCHAEAVMLFVEMVHAGI 204

Query: 356 KLDSATVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVS 535
           + D+ T+       ++   L++G Q    + K GF +     N LI+ Y +   +     
Sbjct: 205 RCDAFTLSVALRAASSLANLSLGHQLHCCIIKLGFSNSGFLENCLIEFYGKSSELHLMQK 264

Query: 536 AFRSLPEKNSDSWTAVISANVDHGYPFKAIELFKQM 643
            F  + +K+  S   VI    D+    +A+  F+ M
Sbjct: 265 VFDDMDDKDLVSSNTVIQCYADNMCDEQALSHFRAM 300


>ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
            gi|241933759|gb|EES06904.1| hypothetical protein
            SORBIDRAFT_04g021580 [Sorghum bicolor]
          Length = 798

 Score =  177 bits (449), Expect = 2e-42
 Identities = 90/214 (42%), Positives = 128/214 (59%)
 Frame = +2

Query: 2    GWFEEALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVV 181
            G +  A+ LF+RMQ   V+ NE+ YT++L AC+AL D   G E+H   +R+GYG+N SV+
Sbjct: 474  GQYGRAVHLFRRMQSEHVQPNEFTYTAILTACMALGDTDSGMEIHSNSIRSGYGTNTSVL 533

Query: 182  NTLINLYSKLWHPQRALALCSLIPHGEIIWSFLIEACLRIKDHETIFNLLQMIQRSHGKL 361
             +LI  Y +     +AL LC  + + +I W  L+E+  ++  H  I NL  +IQR    L
Sbjct: 534  KSLITFYLRQGRYHQALKLCLALSNHDISWDTLVESFSQVDHHVGIVNLFHVIQRCGANL 593

Query: 362  DSATVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAF 541
            D  T   I + C    LL  G Q  AY+TKRG  S   TN+ LI MYS CG +  A  AF
Sbjct: 594  DYHTARLILSSCGKLGLLEEGLQAHAYMTKRGLASTACTNSYLIDMYSSCGSLRHAFDAF 653

Query: 542  RSLPEKNSDSWTAVISANVDHGYPFKAIELFKQM 643
              +P+K++ SWT++++ANV++G P  AI LF QM
Sbjct: 654  NYMPDKDASSWTSIVAANVENGCPETAIRLFSQM 687



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 2/199 (1%)
 Frame = +2

Query: 14  EALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGY-GSNISVVNTL 190
           EALEL   M    V  + ++++  L AC A+  L  G+++H  + + GY G+++ V N L
Sbjct: 99  EALELLLCMLGLLVRPDAFVFSVALRACAAVGSLGLGRQLHGAVAKLGYVGADLFVANGL 158

Query: 191 INLYSKLWHPQRALALCSLIPHGEII-WSFLIEACLRIKDHETIFNLLQMIQRSHGKLDS 367
           + +YS     + A  +   I   +++ W+ ++ A            L   + R     D+
Sbjct: 159 VTMYSSCQSLRCAEKVFGSITSPDLVSWTSMLSAYTENGCDAEALMLFMEMARDGIACDA 218

Query: 368 ATVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAFRS 547
            T+       ++   + +G Q    + K G V     +N LI  Y   G +    + F  
Sbjct: 219 FTLSVALRAASSLGHVGLGHQLHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDE 278

Query: 548 LPEKNSDSWTAVISANVDH 604
           +  K+  SW  +I    ++
Sbjct: 279 MNGKDLVSWNTIIQCYAEN 297


>ref|NP_001047017.1| Os02g0529900 [Oryza sativa Japonica Group]
            gi|49388326|dbj|BAD25438.1| pentatricopeptide (PPR)
            repeat-containing protein-like [Oryza sativa Japonica
            Group] gi|113536548|dbj|BAF08931.1| Os02g0529900 [Oryza
            sativa Japonica Group] gi|125582364|gb|EAZ23295.1|
            hypothetical protein OsJ_06992 [Oryza sativa Japonica
            Group] gi|215696993|dbj|BAG90987.1| unnamed protein
            product [Oryza sativa Japonica Group]
          Length = 787

 Score =  174 bits (441), Expect = 1e-41
 Identities = 95/214 (44%), Positives = 126/214 (58%)
 Frame = +2

Query: 2    GWFEEALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVV 181
            G FE A+ LF+ MQL  V+ NE+ YTSVL AC+AL D+  G E+H   +R GYG++ SV+
Sbjct: 462  GQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALGDVVSGMEIHSNSIRNGYGTSDSVL 521

Query: 182  NTLINLYSKLWHPQRALALCSLIPHGEIIWSFLIEACLRIKDHETIFNLLQMIQRSHGKL 361
             +LI+ Y +     +AL LC  + + EI W  L +    + DH  I NL  +IQRS G L
Sbjct: 522  RSLISFYLREGQFNQALRLCLSLSNSEISWGTLFQEFAELGDHLGILNLFHVIQRSGGVL 581

Query: 362  DSATVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAF 541
            D  T C I + C     L  G Q  AYL KRG  S     + LI MYS CG ++ A  AF
Sbjct: 582  DYPTACLILSSCGKKAHLPEGLQAHAYLMKRGLSSTGCMCDYLIDMYSGCGSLTHAFEAF 641

Query: 542  RSLPEKNSDSWTAVISANVDHGYPFKAIELFKQM 643
            R+   +NS SWT++I A+V++G P  AI LF QM
Sbjct: 642  RNTSGRNSSSWTSIIMASVENGCPETAIRLFVQM 675



 Score = 68.9 bits (167), Expect = 8e-10
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)
 Frame = +2

Query: 14  EALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGY-GSNISVVNTL 190
           EAL+L  RM  + +  + ++++  L AC A   L  G+++H    + GY G+++ V N L
Sbjct: 87  EALDLLLRMVEWPLRPDAFVFSVALRACAAAGSLGVGRQVHAAAAKMGYVGADLFVANGL 146

Query: 191 INLYSKLWHPQRALALCSLIPHG-----EIIWSFLIEACLRIK-DHETIFNLLQMIQRSH 352
           + +Y+      R+L     +  G      + W+ ++ A      D + +   L+MI   H
Sbjct: 147 VTMYASC----RSLGCAEKVFSGIAAPDSVSWTSMLSAYTENGCDTQALMLFLEMI---H 199

Query: 353 GKL--DSATVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISD 526
           G +  D+ T+       ++   + +G Q   Y+ K GFV      N LI+ Y  C  +  
Sbjct: 200 GGVSCDAYTLSVALRAASSLGHVRLGYQLHCYMIKSGFVPSEFLENCLIEFYGRCRELQL 259

Query: 527 AVSAFRSLPEKNSDSWTAVISANVDHGYPFKAIELFKQMCW 649
               F  +  K+  SW  VI    D+    +A+  F+ + +
Sbjct: 260 MQKVFDEMNAKDLVSWNIVIQCYADNLCDEEALVHFRDLMY 300



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 54/211 (25%), Positives = 88/211 (41%)
 Frame = +2

Query: 11  EEALELFQRMQLYSVEVNEYIYTSVLLACLALEDLRKGKEMHCKILRTGYGSNISVVNTL 190
           EEAL  F+ +     E +EY   S+L           G+E+H  ++R G  S+  V++ L
Sbjct: 289 EEALVHFRDLMYKCAECDEYTLGSILHVITRRCAFDYGREIHGYLIRAGLDSDKYVMSAL 348

Query: 191 INLYSKLWHPQRALALCSLIPHGEIIWSFLIEACLRIKDHETIFNLLQMIQRSHGKLDSA 370
           +++Y                    + W     A LR         +L+      GKLD  
Sbjct: 349 MDMY--------------------VNW-----ATLRKSRSMLPLRMLKYYLSVQGKLDQF 383

Query: 371 TVCYIFNFCANSCLLNVGTQQQAYLTKRGFVSDIITNNSLIKMYSECGMISDAVSAFRSL 550
            V      CA+   L  G    A + K     D    +SL+ MY++CG + +A   F   
Sbjct: 384 IVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAHILFSRT 443

Query: 551 PEKNSDSWTAVISANVDHGYPFKAIELFKQM 643
            +  + +W+A+IS +  +G   +AI LF+ M
Sbjct: 444 KDPCTVAWSAIISGSCLNGQFERAIHLFRTM 474