BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008231
         (1201 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]               552   e-155
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]   493   e-137
emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]   476   e-132
gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]                       476   e-132
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   472   e-131

>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score =  552 bits (1422), Expect = e-155
 Identities = 263/399 (65%), Positives = 324/399 (81%)
 Frame = +3

Query: 3    QMDVKTAFLNSDLDEEIYMMQPEGTIVPGNEHKVCKLVKSLYGLKQAPKQWHEKFDSVMM 182
            QMDVKT FLN +L+EEIYM QPEG +V G + KVCKL+KSLYGLKQAPKQWHEK D+V++
Sbjct: 878  QMDVKTTFLNGELEEEIYMTQPEGCVVLGQKEKVCKLLKSLYGLKQAPKQWHEKLDNVLL 937

Query: 183  SNGYHINDADKCIYFKSFDVNTYVIICLYVDDMLIMSPSLDVVRNTKMFLSSQFEMKDLG 362
              G+  NDADKC+Y +S +   YVIICLYVDDMLI     D+V  TK+FL S+FEMKD+G
Sbjct: 938  CEGFSTNDADKCVYSRS-ENGEYVIICLYVDDMLIFGTCNDIVFKTKLFLGSKFEMKDMG 996

Query: 363  EADVILGIKIIRNSDGYTLSQEHYVEKFLKKFNFYDSKPVSTPYEANSELQKNAQHGVLQ 542
            EA VILG+KIIR  D   LSQE Y EK LKKF +YD K VSTPY+ANS+L+KN    + Q
Sbjct: 997  EASVILGVKIIRKGDSILLSQEKYTEKLLKKFGYYDFKSVSTPYDANSKLKKNRGESISQ 1056

Query: 543  SRYAQIIGSLMYLMNCTRPDIAYAVSRLSRYTHCPSQEHWSALERLAKYLRGTMNYGIRF 722
            ++YAQIIGSL++LM+ +RPDIAYAV RLSR T CPSQ+HW AL RL KYLRGTM+Y I +
Sbjct: 1057 TQYAQIIGSLLHLMSFSRPDIAYAVGRLSRCTQCPSQDHWEALARLMKYLRGTMDYAIEY 1116

Query: 723  RQTPPVIEGYCDANWISDSHDIKSTSGYIFTLGGGAVAWKSSKQTLIARSTMESELIALD 902
               P V+EGY DANWISDS + KSTSGY+FTLGGGAV W+S++QT+IARSTMESE +AL+
Sbjct: 1117 SGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAVTWRSARQTIIARSTMESEFVALE 1176

Query: 903  KASAEAEWLRNLLADLPIGTKPPPAVPMHCDCQAAIAKAKSKLYNGKSRHIRLRLQSIKQ 1082
             A +EAEWL+N LA++P+G KP P+V MHCDCQ+AIA AK+K YNGK+RHI+LR   +KQ
Sbjct: 1177 MAGSEAEWLKNFLANIPLGMKPTPSVSMHCDCQSAIAIAKNKSYNGKNRHIQLRHNLVKQ 1236

Query: 1083 LLESGVVALDYVRSELNLADPLTKPLNRRQVVDTSRGMG 1199
            LL+SG +++DYV+SE +LADPLTKPL R+ +++TSRGMG
Sbjct: 1237 LLKSGTISIDYVKSERDLADPLTKPLGRKMILETSRGMG 1275


>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
          Length = 1277

 Score =  493 bits (1269), Expect = e-137
 Identities = 245/398 (61%), Positives = 302/398 (75%)
 Frame = +3

Query: 3    QMDVKTAFLNSDLDEEIYMMQPEGTIVPGNEHKVCKLVKSLYGLKQAPKQWHEKFDSVMM 182
            QMDVKTAFLN DLDEEIYM QPEG   PG E KVCKLVKSLYGLKQAPKQWHEKFD+VM+
Sbjct: 874  QMDVKTAFLNGDLDEEIYMEQPEGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVML 933

Query: 183  SNGYHINDADKCIYFKSFDVNTYVIICLYVDDMLIMSPSLDVVRNTKMFLSSQFEMKDLG 362
            S+G+ IN+ DKC+Y K  + + YVI+CLYVDDMLI+     ++ +TK  L+S+F+MKD+G
Sbjct: 934  SHGFKINECDKCVYVKDTE-HGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMG 992

Query: 363  EADVILGIKIIRNSDGYTLSQEHYVEKFLKKFNFYDSKPVSTPYEANSELQKNAQHGVLQ 542
             ADVILGIKI R S+   LSQ HYV+K L KF+  +S    TP +    L KN    V Q
Sbjct: 993  LADVILGIKIKRTSBELILSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQ 1052

Query: 543  SRYAQIIGSLMYLMNCTRPDIAYAVSRLSRYTHCPSQEHWSALERLAKYLRGTMNYGIRF 722
              Y++IIGSLMYLM+CTRPDIAYAVS+LSRYT  P  +HW  + R+ KYLR T +YG+ +
Sbjct: 1053 VEYSRIIGSLMYLMSCTRPDIAYAVSKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHY 1112

Query: 723  RQTPPVIEGYCDANWISDSHDIKSTSGYIFTLGGGAVAWKSSKQTLIARSTMESELIALD 902
             + P V+EGY DANWIS+  D KS SGY+FTLGG AV+WKSSKQ +IARSTMESE IALD
Sbjct: 1113 TRYPAVLEGYSDANWISNVKDSKSHSGYVFTLGGAAVSWKSSKQXVIARSTMESEFIALD 1172

Query: 903  KASAEAEWLRNLLADLPIGTKPPPAVPMHCDCQAAIAKAKSKLYNGKSRHIRLRLQSIKQ 1082
            K   EAEWLR+ L D+P  +KP P + +HCD Q+AI +A+S +YNGKSRHI  R  +I+Q
Sbjct: 1173 KCGEEAEWLRHFLEDIPRWSKPVPPICIHCDSQSAIGRAQSNMYNGKSRHIXRRHNTIRQ 1232

Query: 1083 LLESGVVALDYVRSELNLADPLTKPLNRRQVVDTSRGM 1196
            LL +GV+++DYV+S+ N+ADPLTK LNR  V  +SRGM
Sbjct: 1233 LLSTGVISVDYVKSKDNIADPLTKGLNRELVEKSSRGM 1270


>emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]
          Length = 1096

 Score =  476 bits (1226), Expect = e-132
 Identities = 242/399 (60%), Positives = 298/399 (74%)
 Frame = +3

Query: 3    QMDVKTAFLNSDLDEEIYMMQPEGTIVPGNEHKVCKLVKSLYGLKQAPKQWHEKFDSVMM 182
            QMDVK AFLN DL+EEIYM QPEG +VP  E  VCKLVKS YGL QAPKQWH KFD    
Sbjct: 714  QMDVKIAFLNGDLEEEIYMDQPEGCVVPRKEKNVCKLVKSPYGLTQAPKQWHNKFD---- 769

Query: 183  SNGYHINDADKCIYFKSFDVNTYVIICLYVDDMLIMSPSLDVVRNTKMFLSSQFEMKDLG 362
                         +FK ++ NT V+ICLY+DDMLI   +L+VV  TK FL S+F+MKDLG
Sbjct: 770  -------------HFK-YEDNTCVVICLYIDDMLIFGTNLEVVCETKKFLGSKFDMKDLG 815

Query: 363  EADVILGIKIIRNSDGYTLSQEHYVEKFLKKFNFYDSKPVSTPYEANSELQKNAQHGVLQ 542
            EA+VILGIKI R  +G  LSQEHYVEK L+KF  +D KPVSTPY+ NS+L+KN +H V Q
Sbjct: 816  EAEVILGIKITRTPNGLKLSQEHYVEKILRKFEHFDCKPVSTPYDPNSQLKKNREHSVAQ 875

Query: 543  SRYAQIIGSLMYLMNCTRPDIAYAVSRLSRYTHCPSQEHWSALERLAKYLRGTMNYGIRF 722
              YAQIIGSLMYLMN TRPDIAYA             +HW+ + R+ KYLRGT+NYG+ F
Sbjct: 876  IEYAQIIGSLMYLMNYTRPDIAYA-------------DHWTVVRRVLKYLRGTINYGLCF 922

Query: 723  RQTPPVIEGYCDANWISDSHDIKSTSGYIFTLGGGAVAWKSSKQTLIARSTMESELIALD 902
               P V+EG+ DANWI DS ++KSTSGY+F LGG AV+WKS+KQT I +S ME++ IAL+
Sbjct: 923  SGFPSVLEGFSDANWILDSDEMKSTSGYVFILGGSAVSWKSAKQTCITQSIMEAKFIALE 982

Query: 903  KASAEAEWLRNLLADLPIGTKPPPAVPMHCDCQAAIAKAKSKLYNGKSRHIRLRLQSIKQ 1082
             AS+E EWLRNLL D+P+ T+P  ++ + CD QAAIAKAKSK++NGK+RHI LR   + Q
Sbjct: 983  NASSEVEWLRNLLTDIPLWTRPALSMSICCDSQAAIAKAKSKIFNGKNRHICLRHNIVWQ 1042

Query: 1083 LLESGVVALDYVRSELNLADPLTKPLNRRQVVDTSRGMG 1199
            LLE+GV++L++VRS+LNLAD LTKPLN++ V +TSRGMG
Sbjct: 1043 LLETGVISLEFVRSKLNLADSLTKPLNKKLVEETSRGMG 1081


>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
          Length = 1264

 Score =  476 bits (1225), Expect = e-132
 Identities = 232/400 (58%), Positives = 301/400 (75%), Gaps = 1/400 (0%)
 Frame = +3

Query: 3    QMDVKTAFLNSDLDEEIYMMQPEGTIVPGNEHKVCKLVKSLYGLKQAPKQWHEKFDSVMM 182
            QMDVKTAFLN +LDEEIYM QP+G +V G E KVCKL+KSLYGLKQAPKQWHEKFD+ + 
Sbjct: 862  QMDVKTAFLNGELDEEIYMEQPDGFVVKGQESKVCKLLKSLYGLKQAPKQWHEKFDTTLT 921

Query: 183  SNGYHINDADKCIYFKSFDVNTYVIICLYVDDMLIMSPSLDVVRNTKMFLSSQFEMKDLG 362
            S G+ IN+AD+C+Y++       VI+CLYVDD+LI   ++DV+   K FLS  F+MKDLG
Sbjct: 922  SAGFAINEADRCVYYRCGG-GEGVILCLYVDDILIFGTNIDVINEVKSFLSKSFDMKDLG 980

Query: 363  EADVILGIKIIRNSDGYTLSQEHYVEKFLKKFNFYDSKPVSTPYEANSELQKNAQHGVLQ 542
            EADVIL IK+I+   G TLSQ HYVEK LK+F F + KP  TPY+ +  L+KN + G+ Q
Sbjct: 981  EADVILNIKLIKADGGITLSQSHYVEKVLKRFGFSECKPSPTPYDPSVTLRKNKRIGLDQ 1040

Query: 543  SRYAQIIGSLMYLMNCTRPDIAYAVSRLSRYTHCPSQEHWSALERLAKYLRGTMNYGIRF 722
             RY+QI+GSLMYL   TRPDI++AVS+LSR+   P  +HW ALER+ +YL+GTM+YGI +
Sbjct: 1041 LRYSQIVGSLMYLAGATRPDISFAVSKLSRFMSNPGTDHWHALERVMRYLQGTMSYGIHY 1100

Query: 723  RQTPPVIEGYCDANWISDSHDIKSTSGYIFTLGGGAVAWKSSKQTLIARSTMESELIALD 902
                 V+EGY D+NWISD+ ++ +TSGY+FT+GGGAV+W+S KQT++ RSTME+EL ALD
Sbjct: 1101 SGQHAVLEGYSDSNWISDADELYATSGYVFTIGGGAVSWRSCKQTILTRSTMEAELAALD 1160

Query: 903  KASAEAEWLRNLLADLPIGTKPPPAVPMHCDCQAAIAKAKSKLYNGK-SRHIRLRLQSIK 1079
             A+ EAEWLR LL DLP+  KP PA+ M+CD Q  IAK  S   NGK SRH++ RL+S++
Sbjct: 1161 TATVEAEWLRELLMDLPVVEKPIPAILMNCDNQTVIAKVTSSKDNGKSSRHVKRRLKSVR 1220

Query: 1080 QLLESGVVALDYVRSELNLADPLTKPLNRRQVVDTSRGMG 1199
            +L  SGV+++ Y+ ++ NLADP TK L R  +   SR MG
Sbjct: 1221 KLRNSGVISVTYISTDKNLADPFTKGLPRNVIEIASREMG 1260


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  472 bits (1215), Expect = e-131
 Identities = 231/400 (57%), Positives = 298/400 (74%), Gaps = 1/400 (0%)
 Frame = +3

Query: 3    QMDVKTAFLNSDLDEEIYMMQPEGTIVPGNEHKVCKLVKSLYGLKQAPKQWHEKFDSVMM 182
            QMDVKTAFLN +LDEEIYM QP+G +V G E KVCKL+KSLYGLKQAPKQWHEKFD  + 
Sbjct: 693  QMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLT 752

Query: 183  SNGYHINDADKCIYFKSFDVNTYVIICLYVDDMLIMSPSLDVVRNTKMFLSSQFEMKDLG 362
            S G+ +N+ADKC+Y++       VI+CLYVDD+LI   +L+V+   K FLS  F+MKDLG
Sbjct: 753  SAGFAVNEADKCVYYRHGG-GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLG 811

Query: 363  EADVILGIKIIRNSDGYTLSQEHYVEKFLKKFNFYDSKPVSTPYEANSELQKNAQHGVLQ 542
             ADVIL IK+IR  +G TL Q HYVEK L +F + DSKP  TPY+ +  L+KN +    Q
Sbjct: 812  VADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQ 871

Query: 543  SRYAQIIGSLMYLMNCTRPDIAYAVSRLSRYTHCPSQEHWSALERLAKYLRGTMNYGIRF 722
              Y+QIIGSLMYL + TRPDI++AVS+LSR+T  P  +HW ALER+ +YL+GT+  G+ +
Sbjct: 872  LEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHY 931

Query: 723  RQTPPVIEGYCDANWISDSHDIKSTSGYIFTLGGGAVAWKSSKQTLIARSTMESELIALD 902
               P V+EGY D+NWISD  +IK+TSGY+FTLGGGAV+W+S KQT++ RSTME+EL ALD
Sbjct: 932  TGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALD 991

Query: 903  KASAEAEWLRNLLADLPIGTKPPPAVPMHCDCQAAIAKAKSKLYNGK-SRHIRLRLQSIK 1079
             A+ EAEWLR+LL DLP+  KP PA+ M+CD Q  I K  S   N K SRH++ RL+S++
Sbjct: 992  TATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVR 1051

Query: 1080 QLLESGVVALDYVRSELNLADPLTKPLNRRQVVDTSRGMG 1199
            +L  SGV+ LDY+++  NLADP TK L+R  + + S+ MG
Sbjct: 1052 KLRNSGVITLDYIQTARNLADPFTKGLSRNVINNASKEMG 1091