BLASTX nr result
ID: Coptis25_contig00008224
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00008224
(1619 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI34639.3| unnamed protein product [Vitis vinifera] 251 4e-64
ref|XP_002518957.1| transporter, putative [Ricinus communis] gi|... 250 7e-64
ref|XP_002277144.1| PREDICTED: nuclear pore complex protein Nup9... 248 3e-63
ref|XP_002317654.1| predicted protein [Populus trichocarpa] gi|2... 247 6e-63
ref|XP_004148101.1| PREDICTED: nucleoporin nup189-like [Cucumis ... 246 1e-62
>emb|CBI34639.3| unnamed protein product [Vitis vinifera]
Length = 1047
Score = 251 bits (641), Expect = 4e-64
Identities = 128/246 (52%), Positives = 170/246 (69%), Gaps = 9/246 (3%)
Frame = -2
Query: 886 SAMPIYKDKTHEELRWEDSQLGAKEG-AAENGSDREQTNVARTDQRLN-------VHYGS 731
++ P++++ E S G K+ ENG +E+ + + +Q+ N + G
Sbjct: 793 ASKPVHENGKVSEEGLNGSNAGDKDANLVENGLAKERIHTMKPNQKPNGVHDDHSIQKGD 852
Query: 730 AIAPIFG-KAGEAVLTYDHGAHIDALMPKLKLTDYYSEPNVQELAAKEKAKPGFCGHVKD 554
+ + G +AGEA + Y+HGA I+ALMPKL+ +DYY+EP +QELAAKE+A+PGFC VKD
Sbjct: 853 SYITLTGHRAGEAAIVYEHGADIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKD 912
Query: 553 FVVGRYGYGSIKFIGDTDVRGLDLGSLIHLNNREVVVYTDKSKMPSIGEGLNKPAEVTLL 374
FVVGR+GYGSIKF+G+TDVR LDL SL+ NNREV+VY D SK P +G+GLNKPAEVTLL
Sbjct: 913 FVVGRHGYGSIKFMGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLL 972
Query: 373 NIMCFDKKTGQQYTEGPXXXXXXXXXXXKTQEHGAEFISYEPSNGEWKFRVNHFFGHDQL 194
NI CFDKKTG QYTEGP K ++ GAEF+SY+P GEWKFRVNHF + +L
Sbjct: 973 NIKCFDKKTGVQYTEGPKIGKYKEMLKRKAEDQGAEFVSYDPMKGEWKFRVNHFSKY-EL 1031
Query: 193 SNGKVD 176
+ ++D
Sbjct: 1032 GDEEID 1037
Score = 90.9 bits (224), Expect = 9e-16
Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = -2
Query: 1024 TATLGTRGVWPSSFGNQGRGGRVAGYSSTDDIDDGNGIQP-GMLKSVSAMPIYKDKTHEE 848
T T G G S+FG Q G RVA Y+ T ++D G+G QP G L+S+SAMP+YKDK+HEE
Sbjct: 318 TPTFGGTGFGQSAFGGQRGGSRVAAYTPTTEVDSGSGTQPVGKLESISAMPVYKDKSHEE 377
Query: 847 LRWEDSQLGAKEGAAENGSDREQTNVARTDQRLNVHYGSAIAPIFGKA 704
LRWED QLG K G A ++ + N A +P FG++
Sbjct: 378 LRWEDYQLGDKGGPAPASQSTGGVGFGASNTQSNPF---AASPAFGQS 422
Score = 84.0 bits (206), Expect = 1e-13
Identities = 54/124 (43%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Frame = -1
Query: 1598 GSTVAGYSQTAELGLDNTLHACGKLQSISAMPVYKDKSHEVLRWEDYQLQNSSYPSGAQS 1419
GS VA Y+ T E+ + GKL+SISAMPVYKDKSHE LRWEDYQL + P+ A
Sbjct: 337 GSRVAAYTPTTEVDSGSGTQPVGKLESISAMPVYKDKSHEELRWEDYQLGDKGGPAPASQ 396
Query: 1418 SSLGNIYTSRAENSREIQTSP-FNVSSQSPFGGK-APTMFKTARP-FGTASFLSGGKDAP 1248
S+ G + + S SP F SS +PF + F P FG++ F GG P
Sbjct: 397 STGGVGFGASNTQSNPFAASPAFGQSSANPFSSSTSSNPFAPRTPAFGSSGF--GGSSTP 454
Query: 1247 LVSS 1236
SS
Sbjct: 455 AFSS 458
Score = 64.7 bits (156), Expect = 7e-08
Identities = 34/57 (59%), Positives = 38/57 (66%)
Frame = -2
Query: 1243 SAPDGLFMGSTVAGYSQTAELGLENSLHVCGKLQSISAMPVYKDKSHEVLRWADYQL 1073
SA G GS VA Y+ T E+ + GKL+SISAMPVYKDKSHE LRW DYQL
Sbjct: 329 SAFGGQRGGSRVAAYTPTTEVDSGSGTQPVGKLESISAMPVYKDKSHEELRWEDYQL 385
>ref|XP_002518957.1| transporter, putative [Ricinus communis] gi|223541944|gb|EEF43490.1|
transporter, putative [Ricinus communis]
Length = 957
Score = 250 bits (639), Expect = 7e-64
Identities = 122/208 (58%), Positives = 154/208 (74%), Gaps = 7/208 (3%)
Frame = -2
Query: 814 EGAAENGSDREQTNVARTDQRLNVHYGSAIAP------IFG-KAGEAVLTYDHGAHIDAL 656
E +E+G +E+ ++ + VH +++ + G +AGEA + Y+HGA I+AL
Sbjct: 723 ENMSEDGLSKERVHLKLNQKPNGVHEDNSVQKEELYMTLSGHRAGEAAIVYEHGADIEAL 782
Query: 655 MPKLKLTDYYSEPNVQELAAKEKAKPGFCGHVKDFVVGRYGYGSIKFIGDTDVRGLDLGS 476
MPKL+ +DYY+EP +QELAAKE+A+PGFC HVKDFVVGR+GYGSIKF+G+TDVR LDL S
Sbjct: 783 MPKLRRSDYYTEPRIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFLGETDVRRLDLES 842
Query: 475 LIHLNNREVVVYTDKSKMPSIGEGLNKPAEVTLLNIMCFDKKTGQQYTEGPXXXXXXXXX 296
L+ NNREV+VYTD SK P +G+GLNKPAEVTLLNI CFDKKTG+QYTEG
Sbjct: 843 LVQFNNREVIVYTDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQYTEGAKIEKYKEML 902
Query: 295 XXKTQEHGAEFISYEPSNGEWKFRVNHF 212
K +E GAEF+SY+P GEWKFRVNHF
Sbjct: 903 KRKAEEQGAEFVSYDPVKGEWKFRVNHF 930
Score = 78.2 bits (191), Expect = 6e-12
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = -1
Query: 1598 GSTVAGYSQTAELGLDNTLHACGKLQSISAMPVYKDKSHEVLRWEDYQLQNSSYP-SGAQ 1422
GS V Y+ TAE D++ GKL+SISAM VYKDKSHE LRWEDYQ + P + Q
Sbjct: 283 GSRVVPYTATAET--DSSSGQPGKLESISAMSVYKDKSHEELRWEDYQSGDKGGPVAPGQ 340
Query: 1421 SSSLGNIYTSRAENSREIQTSPFNVSSQSPFGGKAPTMFKTARPFGTAS 1275
SSS N TS A+++ ++ F +S SPF + +++PFG S
Sbjct: 341 SSSGINFATSTAQSNPFAPSNTFAQTSASPFSSSVSSNPFSSKPFGPTS 389
Score = 77.4 bits (189), Expect = 1e-11
Identities = 46/107 (42%), Positives = 60/107 (56%), Gaps = 10/107 (9%)
Frame = -2
Query: 1036 PLGMTATLGTRGVWPSSFGNQG---------RGG-RVAGYSSTDDIDDGNGIQPGMLKSV 887
P G ++ GT+ P+ FGN G RGG RV Y++T + D +G QPG L+S+
Sbjct: 251 PFGTSSPFGTQATTPT-FGNTGFGQPAFAGNRGGSRVVPYTATAETDSSSG-QPGKLESI 308
Query: 886 SAMPIYKDKTHEELRWEDSQLGAKEGAAENGSDREQTNVARTDQRLN 746
SAM +YKDK+HEELRWED Q G K G G N A + + N
Sbjct: 309 SAMSVYKDKSHEELRWEDYQSGDKGGPVAPGQSSSGINFATSTAQSN 355
>ref|XP_002277144.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 1
[Vitis vinifera]
Length = 1013
Score = 248 bits (634), Expect = 3e-63
Identities = 123/217 (56%), Positives = 158/217 (72%), Gaps = 8/217 (3%)
Frame = -2
Query: 802 ENGSDREQTNVARTDQRLN-------VHYGSAIAPIFG-KAGEAVLTYDHGAHIDALMPK 647
ENG +E+ + + +Q+ N + G + + G +AGEA + Y+HGA I+ALMPK
Sbjct: 788 ENGLAKERIHTMKPNQKPNGVHDDHSIQKGDSYITLTGHRAGEAAIVYEHGADIEALMPK 847
Query: 646 LKLTDYYSEPNVQELAAKEKAKPGFCGHVKDFVVGRYGYGSIKFIGDTDVRGLDLGSLIH 467
L+ +DYY+EP +QELAAKE+A+PGFC VKDFVVGR+GYGSIKF+G+TDVR LDL SL+
Sbjct: 848 LRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFMGETDVRRLDLESLVQ 907
Query: 466 LNNREVVVYTDKSKMPSIGEGLNKPAEVTLLNIMCFDKKTGQQYTEGPXXXXXXXXXXXK 287
NNREV+VY D SK P +G+GLNKPAEVTLLNI CFDKKTG QYTEGP K
Sbjct: 908 FNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYTEGPKIGKYKEMLKRK 967
Query: 286 TQEHGAEFISYEPSNGEWKFRVNHFFGHDQLSNGKVD 176
++ GAEF+SY+P GEWKFRVNHF + +L + ++D
Sbjct: 968 AEDQGAEFVSYDPMKGEWKFRVNHFSKY-ELGDEEID 1003
Score = 90.9 bits (224), Expect = 9e-16
Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = -2
Query: 1024 TATLGTRGVWPSSFGNQGRGGRVAGYSSTDDIDDGNGIQP-GMLKSVSAMPIYKDKTHEE 848
T T G G S+FG Q G RVA Y+ T ++D G+G QP G L+S+SAMP+YKDK+HEE
Sbjct: 301 TPTFGGTGFGQSAFGGQRGGSRVAAYTPTTEVDSGSGTQPVGKLESISAMPVYKDKSHEE 360
Query: 847 LRWEDSQLGAKEGAAENGSDREQTNVARTDQRLNVHYGSAIAPIFGKA 704
LRWED QLG K G A ++ + N A +P FG++
Sbjct: 361 LRWEDYQLGDKGGPAPASQSTGGVGFGASNTQSNPF---AASPAFGQS 405
Score = 84.0 bits (206), Expect = 1e-13
Identities = 54/124 (43%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Frame = -1
Query: 1598 GSTVAGYSQTAELGLDNTLHACGKLQSISAMPVYKDKSHEVLRWEDYQLQNSSYPSGAQS 1419
GS VA Y+ T E+ + GKL+SISAMPVYKDKSHE LRWEDYQL + P+ A
Sbjct: 320 GSRVAAYTPTTEVDSGSGTQPVGKLESISAMPVYKDKSHEELRWEDYQLGDKGGPAPASQ 379
Query: 1418 SSLGNIYTSRAENSREIQTSP-FNVSSQSPFGGK-APTMFKTARP-FGTASFLSGGKDAP 1248
S+ G + + S SP F SS +PF + F P FG++ F GG P
Sbjct: 380 STGGVGFGASNTQSNPFAASPAFGQSSANPFSSSTSSNPFAPRTPAFGSSGF--GGSSTP 437
Query: 1247 LVSS 1236
SS
Sbjct: 438 AFSS 441
Score = 64.7 bits (156), Expect = 7e-08
Identities = 34/57 (59%), Positives = 38/57 (66%)
Frame = -2
Query: 1243 SAPDGLFMGSTVAGYSQTAELGLENSLHVCGKLQSISAMPVYKDKSHEVLRWADYQL 1073
SA G GS VA Y+ T E+ + GKL+SISAMPVYKDKSHE LRW DYQL
Sbjct: 312 SAFGGQRGGSRVAAYTPTTEVDSGSGTQPVGKLESISAMPVYKDKSHEELRWEDYQL 368
>ref|XP_002317654.1| predicted protein [Populus trichocarpa] gi|222860719|gb|EEE98266.1|
predicted protein [Populus trichocarpa]
Length = 1007
Score = 247 bits (631), Expect = 6e-63
Identities = 131/256 (51%), Positives = 171/256 (66%), Gaps = 13/256 (5%)
Frame = -2
Query: 886 SAMPIYKDKTHEELRWEDSQLGAKEG-----AAENGSDREQTNVARTDQRLN-VHYG--- 734
++ P++++ + E + + G G AENG +EQ + +Q+ N VH
Sbjct: 750 ASAPVHENGKNSESDFANLSNGYTAGDKNKNLAENGVIKEQAPHVKVNQKPNGVHEDHSA 809
Query: 733 ----SAIAPIFGKAGEAVLTYDHGAHIDALMPKLKLTDYYSEPNVQELAAKEKAKPGFCG 566
S + +AGEA + Y+HGA I+ALMPKL+ +DY++EP +QELAAKE+AKPGFC
Sbjct: 810 QKEESYMTLSGHRAGEAAIVYEHGADIEALMPKLRRSDYFTEPRIQELAAKERAKPGFCR 869
Query: 565 HVKDFVVGRYGYGSIKFIGDTDVRGLDLGSLIHLNNREVVVYTDKSKMPSIGEGLNKPAE 386
HVKDFVVGR+GYGSIKF G+TDVR LDL SL+ NNREV+VY D SK P +G+GLNKPAE
Sbjct: 870 HVKDFVVGRHGYGSIKFSGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAE 929
Query: 385 VTLLNIMCFDKKTGQQYTEGPXXXXXXXXXXXKTQEHGAEFISYEPSNGEWKFRVNHFFG 206
VTLLNI CFDKKTG+Q+TEGP K ++ GAEF+SY+P GEWKF+VNHF
Sbjct: 930 VTLLNIKCFDKKTGRQFTEGPKIEKYKEMLKRKAEDQGAEFVSYDPVKGEWKFKVNHFSK 989
Query: 205 HDQLSNGKVDLDKQVS 158
+ L + D D Q +
Sbjct: 990 Y-MLEEEEEDRDAQAT 1004
Score = 68.6 bits (166), Expect = 5e-09
Identities = 37/77 (48%), Positives = 44/77 (57%)
Frame = -2
Query: 1024 TATLGTRGVWPSSFGNQGRGGRVAGYSSTDDIDDGNGIQPGMLKSVSAMPIYKDKTHEEL 845
T+ G G S FG Q G R + Y+ T + + G Q G L S+SAM YKDK+HEEL
Sbjct: 330 TSPFGNNGFAQSGFGAQRPGSRASPYAETAEAE--GGAQAGKLLSISAMTAYKDKSHEEL 387
Query: 844 RWEDSQLGAKEGAAENG 794
RWED QLG K G G
Sbjct: 388 RWEDYQLGDKGGPLPAG 404
Score = 58.9 bits (141), Expect = 4e-06
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = -1
Query: 1598 GSTVAGYSQTAELGLDNTLHACGKLQSISAMPVYKDKSHEVLRWEDYQLQNSSYPSGA-Q 1422
GS + Y++TAE + A GKL SISAM YKDKSHE LRWEDYQL + P A Q
Sbjct: 349 GSRASPYAETAEA--EGGAQA-GKLLSISAMTAYKDKSHEELRWEDYQLGDKGGPLPAGQ 405
Query: 1421 SSSLGNIYTSRAENSREIQTSPFNVSSQSPFGGKAPTMFKTARPFGTASF 1272
S G S ++ + + +S + F +F T SF
Sbjct: 406 SPGGGGFNVSASQPNPFAPPTGLGQTSANIFSSTTTNLFAPKTQTSTPSF 455
>ref|XP_004148101.1| PREDICTED: nucleoporin nup189-like [Cucumis sativus]
Length = 994
Score = 246 bits (628), Expect = 1e-62
Identities = 123/239 (51%), Positives = 160/239 (66%), Gaps = 8/239 (3%)
Frame = -2
Query: 868 KDKTHEELRWEDSQLGAKEGAAENGSDREQTNVARTDQRLNVHYGSAIAP--------IF 713
K + L +D+ + ENG+ +E ++ + +Q+ N + AP
Sbjct: 753 KGNLDKSLPSKDTSVRENGNVVENGTSKENIHLNKVNQKPNGVHEDHSAPKEDLYRTFAG 812
Query: 712 GKAGEAVLTYDHGAHIDALMPKLKLTDYYSEPNVQELAAKEKAKPGFCGHVKDFVVGRYG 533
+AGEA + Y+HGA I+ALMPKL +DYY+EP +QELAAKE+A+PGFC HVKDFVVGR+G
Sbjct: 813 HRAGEAAIVYEHGADIEALMPKLLHSDYYTEPKIQELAAKERAEPGFCRHVKDFVVGRHG 872
Query: 532 YGSIKFIGDTDVRGLDLGSLIHLNNREVVVYTDKSKMPSIGEGLNKPAEVTLLNIMCFDK 353
YGSIKF G+TDVR LDL S++ NNREV+VY D+SK P G+GLNKPAEVT+LNI C DK
Sbjct: 873 YGSIKFFGETDVRRLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCVDK 932
Query: 352 KTGQQYTEGPXXXXXXXXXXXKTQEHGAEFISYEPSNGEWKFRVNHFFGHDQLSNGKVD 176
+TG QYTEGP KT+ GAEF+SY+P GEWKFRV HF ++ N +V+
Sbjct: 933 QTGHQYTEGPKVEKYKELLRKKTEAQGAEFVSYDPVKGEWKFRVEHFSKYNMEDNEEVE 991
Score = 78.6 bits (192), Expect = 4e-12
Identities = 47/110 (42%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = -1
Query: 1598 GSTVAGYSQTAELGLDN-TLHACGKLQSISAMPVYKDKSHEVLRWEDYQLQNSSYPSGAQ 1422
GS V Y+ T E + + A GKL+SISAMPVYKDKSHE LRWEDYQL + P A
Sbjct: 328 GSRVTPYAPTPEPDPGSGSTQAAGKLESISAMPVYKDKSHEELRWEDYQLGDKGGPLPAG 387
Query: 1421 SSSLGNIYTSRAENSREIQTSPFNVSSQSPFGGKAPTMFKTARPFGTASF 1272
S+ G + + +S F+ SS +PF PT +P G +F
Sbjct: 388 QSASGVGFGVPGGQPNPVASSTFSQSSPNPFSTSTPTNPFAPKPSGFGTF 437
Score = 78.2 bits (191), Expect = 6e-12
Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = -2
Query: 1024 TATLGTRGVWPSSFGNQGRGGRVAGYSSTDDIDDGNGIQP--GMLKSVSAMPIYKDKTHE 851
T++ GT G + FG Q G RV Y+ T + D G+G G L+S+SAMP+YKDK+HE
Sbjct: 309 TSSFGTSGFGQAGFGGQRGGSRVTPYAPTPEPDPGSGSTQAAGKLESISAMPVYKDKSHE 368
Query: 850 ELRWEDSQLGAKEGAAENG 794
ELRWED QLG K G G
Sbjct: 369 ELRWEDYQLGDKGGPLPAG 387
Score = 58.2 bits (139), Expect = 6e-06
Identities = 31/50 (62%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = -2
Query: 1219 GSTVAGYSQTAELGL-ENSLHVCGKLQSISAMPVYKDKSHEVLRWADYQL 1073
GS V Y+ T E S GKL+SISAMPVYKDKSHE LRW DYQL
Sbjct: 328 GSRVTPYAPTPEPDPGSGSTQAAGKLESISAMPVYKDKSHEELRWEDYQL 377