BLASTX nr result

ID: Coptis25_contig00008161 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008161
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27769.3| unnamed protein product [Vitis vinifera]               83   3e-14
ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    83   3e-14
ref|XP_003569099.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    81   8e-14
ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|2...    81   1e-13
ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP...    80   2e-13

>emb|CBI27769.3| unnamed protein product [Vitis vinifera]
          Length = 584

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/65 (66%), Positives = 44/65 (67%)
 Frame = +2

Query: 2   SWV*AYTAHRGELNRIFMVKKLHLGHVAKSFGLKDQPSLVGGSXXXXXXXXXXXXXXXGL 181
           SWV AYTAHRGEL RIF VKKLHLGHVAKSF LKDQPSLVG S               GL
Sbjct: 515 SWVRAYTAHRGELKRIFQVKKLHLGHVAKSFALKDQPSLVGKSMQMQTKKRKRDQKQQGL 574

Query: 182 MKRRK 196
            KR+K
Sbjct: 575 SKRKK 579


>ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like [Vitis
           vinifera]
          Length = 600

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/65 (66%), Positives = 44/65 (67%)
 Frame = +2

Query: 2   SWV*AYTAHRGELNRIFMVKKLHLGHVAKSFGLKDQPSLVGGSXXXXXXXXXXXXXXXGL 181
           SWV AYTAHRGEL RIF VKKLHLGHVAKSF LKDQPSLVG S               GL
Sbjct: 531 SWVRAYTAHRGELKRIFQVKKLHLGHVAKSFALKDQPSLVGKSMQMQTKKRKRDQKQQGL 590

Query: 182 MKRRK 196
            KR+K
Sbjct: 591 SKRKK 595


>ref|XP_003569099.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like
           [Brachypodium distachyon]
          Length = 605

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 43/72 (59%), Positives = 49/72 (68%)
 Frame = +2

Query: 2   SWV*AYTAHRGELNRIFMVKKLHLGHVAKSFGLKDQPSLVGGSXXXXXXXXXXXXXXXGL 181
           SW+ AYTAHRGEL +IFMVKKLHLGHVAKSFGLK+QPSLVG +                 
Sbjct: 536 SWLRAYTAHRGELKKIFMVKKLHLGHVAKSFGLKEQPSLVGRAHQVQ------------- 582

Query: 182 MKRRKSFGKHER 217
           +K+RK   KHER
Sbjct: 583 LKKRKKEQKHER 594


>ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|222862365|gb|EEE99871.1|
           predicted protein [Populus trichocarpa]
          Length = 594

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 41/65 (63%), Positives = 45/65 (69%)
 Frame = +2

Query: 2   SWV*AYTAHRGELNRIFMVKKLHLGHVAKSFGLKDQPSLVGGSXXXXXXXXXXXXXXXGL 181
           SWV AYTAHRG+L RIFMVKKLHLGHV++SFGLK QPSLVG S               GL
Sbjct: 523 SWVRAYTAHRGDLKRIFMVKKLHLGHVSRSFGLKQQPSLVGQSFQNQSKKRKREGKQKGL 582

Query: 182 MKRRK 196
            K+RK
Sbjct: 583 SKQRK 587


>ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
           17-like [Glycine max]
          Length = 591

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 41/68 (60%), Positives = 44/68 (64%)
 Frame = +2

Query: 2   SWV*AYTAHRGELNRIFMVKKLHLGHVAKSFGLKDQPSLVGGSXXXXXXXXXXXXXXXGL 181
           SWV AYTAHRGEL R+FM+KKLHLGHVAKSF LK  PSLVG S               GL
Sbjct: 523 SWVRAYTAHRGELKRVFMIKKLHLGHVAKSFALKQPPSLVGQSFQKQIEKRKIFEKKNGL 582

Query: 182 MKRRKSFG 205
            K+RK  G
Sbjct: 583 SKKRKVAG 590


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