BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008040
         (2102 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera]   550   e-154
ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containi...   549   e-153
ref|XP_002510687.1| pentatricopeptide repeat-containing protein,...   518   e-144
ref|XP_002307797.1| predicted protein [Populus trichocarpa] gi|2...   518   e-144
ref|XP_003556649.1| PREDICTED: pentatricopeptide repeat-containi...   501   e-139

>emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera]
          Length = 514

 Score =  550 bits (1416), Expect = e-154
 Identities = 295/490 (60%), Positives = 354/490 (72%), Gaps = 8/490 (1%)
 Frame = +1

Query: 373  MVELRNSHFSRLTVMAQSKAGHSQRKLPKNLRYPRRAKVTPEPKGSLYLKKKKVIDIEPF 552
            +VE  N +  +L V   ++  H  RK  KNL +PRRAK+ PEP+ S +LK          
Sbjct: 30   VVEFSNKNEIKLGVQCNARVNH--RKPTKNLPHPRRAKLPPEPEISTFLKGGN------- 80

Query: 553  RMGFEYSEKPELMDK----NAESXXXXXXXXXXXXXLKWSTDELDAISSLFQGRIPQKPG 720
              G E SE   ++DK    N +              + W +DE++AISSLF GRIPQKPG
Sbjct: 81   -SGTEQSEMGTVLDKELDPNDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPG 139

Query: 721  SLNKERXXXXXXXXXXXXXXXXMPKKHVRRACP----SRASVCDQVYKNPNFLIHLAREI 888
             LN+ER                  K+HVR A      SRAS+  QVYKNP+FLI +AREI
Sbjct: 140  KLNRERPLPLPLPYKIRPMGLPTTKRHVRAASSMPYASRASLSKQVYKNPDFLISIAREI 199

Query: 889  KSLDADKDVCDVLNRWVRFLRKGSLSLTIRELGHMDLPERALQTYCWAQEHPHLFPDDRI 1068
            ++L  + DV  VLN+WVRFLRKGSLSLTIRELGHM LPERALQT+ WAQ+ P LFPDDRI
Sbjct: 200  RNLPLEDDVSPVLNKWVRFLRKGSLSLTIRELGHMGLPERALQTFFWAQKQPQLFPDDRI 259

Query: 1069 LASTLEILARTRQLKKPFDLEKYTISASRSVIEALARGFIRGGSFSLARKLLLVAKANKR 1248
            LAST+E+LART +LK PF LEK+T  A+RSVIEALARGFIR GS SLA KLLLVAK +KR
Sbjct: 260  LASTVEVLARTHKLKVPFSLEKFTGLATRSVIEALARGFIRRGSLSLAWKLLLVAKDSKR 319

Query: 1249 TLDPSIHAKLIWELGKNPDKYRLVLKLLNELAEMNDLKLNQQDCTAVMKVCVRLGKFEIV 1428
             L PSI+AKLI+ELGKNPDK+ LV  LL+EL E  DLKL+ QDCTAVMKVC+RLGKFEIV
Sbjct: 320  MLGPSIYAKLIFELGKNPDKHSLVQALLDELGEREDLKLSHQDCTAVMKVCIRLGKFEIV 379

Query: 1429 ESLFKWFKESGRDISIVMYTTLIHSRYSEEKYREAMTLVWEMEGLNFLFDLPAYGVVIKL 1608
            ESLF W+K+S    S+VMYTTLIHSRY+E+KYREA+ +VWEME  + LFDLPAY VVIKL
Sbjct: 380  ESLFNWYKQSENSPSVVMYTTLIHSRYTEKKYREALAVVWEMEASDCLFDLPAYRVVIKL 439

Query: 1609 FVTLNDVSRAARYFSRLKEARFAPTYDIYRDLIKVYAASGRLAKCKELCKEVEMVGYKLD 1788
            F+ LND+SR  RYFS+LKEA F+PTYDIYRD++K+Y    RLAKC+E+CKE+EM G+KLD
Sbjct: 440  FIALNDLSRTGRYFSKLKEAGFSPTYDIYRDMLKIYMVFRRLAKCREVCKELEMSGFKLD 499

Query: 1789 KQTESLLLQM 1818
            K T S LLQ+
Sbjct: 500  KGTLSQLLQL 509


>ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01860-like
            [Vitis vinifera]
          Length = 514

 Score =  549 bits (1415), Expect = e-153
 Identities = 294/486 (60%), Positives = 352/486 (72%), Gaps = 4/486 (0%)
 Frame = +1

Query: 373  MVELRNSHFSRLTVMAQSKAGHSQRKLPKNLRYPRRAKVTPEPKGSLYLKKKKVIDIEPF 552
            +VE  N +  +L V   ++  H  RK  KNL +PRRAK+ PEP+ S +LK       E  
Sbjct: 30   VVEFSNKNEIKLGVQCNARVNH--RKPTKNLPHPRRAKLPPEPEISTFLKGGNS-GTEQS 86

Query: 553  RMGFEYSEKPELMDKNAESXXXXXXXXXXXXXLKWSTDELDAISSLFQGRIPQKPGSLNK 732
             MG    ++P   D N +              + W +DE++AISSLF GRIPQKPG LN+
Sbjct: 87   EMGTVLDKEP---DANDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPGKLNR 143

Query: 733  ERXXXXXXXXXXXXXXXXMPKKHVRRACP----SRASVCDQVYKNPNFLIHLAREIKSLD 900
            ER                  K+HVR A      SRAS+  QVYKNP+FLI +AREI+ L 
Sbjct: 144  ERPLPLPLPYKLRPMGLPTTKRHVRAASSMPYASRASLSKQVYKNPDFLISIAREIRKLP 203

Query: 901  ADKDVCDVLNRWVRFLRKGSLSLTIRELGHMDLPERALQTYCWAQEHPHLFPDDRILAST 1080
             + DV  VLN+WVRFLRKGSLSLTIRELGHM LPERALQT+ WAQ+ P LFPDDRILAST
Sbjct: 204  LEDDVSPVLNKWVRFLRKGSLSLTIRELGHMGLPERALQTFFWAQKQPQLFPDDRILAST 263

Query: 1081 LEILARTRQLKKPFDLEKYTISASRSVIEALARGFIRGGSFSLARKLLLVAKANKRTLDP 1260
            +E+LART +LK PF LEK+T  ASRSVIEALARGFIR GS SLA KLLLVAK +KR L P
Sbjct: 264  VEVLARTHKLKVPFSLEKFTGLASRSVIEALARGFIRRGSLSLAWKLLLVAKDSKRMLGP 323

Query: 1261 SIHAKLIWELGKNPDKYRLVLKLLNELAEMNDLKLNQQDCTAVMKVCVRLGKFEIVESLF 1440
            SI+AKLI+ELGKNPDK+ LV  LL+EL E  DLKL+ QDCTAVMKVC+RLGKFEIVESLF
Sbjct: 324  SIYAKLIFELGKNPDKHSLVQALLDELGEREDLKLSHQDCTAVMKVCIRLGKFEIVESLF 383

Query: 1441 KWFKESGRDISIVMYTTLIHSRYSEEKYREAMTLVWEMEGLNFLFDLPAYGVVIKLFVTL 1620
             W+K+S    S+VMYTTLIHSRY+E+KYREA+ +VWEME  + +FDLPAY VVIKLF+ L
Sbjct: 384  NWYKQSENSPSVVMYTTLIHSRYTEKKYREALAVVWEMEASDCVFDLPAYRVVIKLFIAL 443

Query: 1621 NDVSRAARYFSRLKEARFAPTYDIYRDLIKVYAASGRLAKCKELCKEVEMVGYKLDKQTE 1800
            ND+SR  RYFS+LKEA F+PTYDIYRD++K+Y    RLAKC+E+CKE+EM G+KLDK T 
Sbjct: 444  NDLSRTGRYFSKLKEAGFSPTYDIYRDMLKIYMVFRRLAKCREVCKELEMSGFKLDKGTL 503

Query: 1801 SLLLQM 1818
            S LLQ+
Sbjct: 504  SQLLQL 509


>ref|XP_002510687.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223551388|gb|EEF52874.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 469

 Score =  518 bits (1335), Expect = e-144
 Identities = 272/458 (59%), Positives = 336/458 (73%), Gaps = 1/458 (0%)
 Frame = +1

Query: 442  QRKLPKNLRYPRRAKVTPEPKGSLYLKKKKVIDIEPFRMGFEYSEKPELMDKNAESXXXX 621
            ++KLPKNL+ PRR+K+ P+   +L+LKK     ++PF+M     +  +  D N E     
Sbjct: 11   RKKLPKNLQSPRRSKLPPDFGVNLFLKKPTT-GVDPFQMDSFLVDDGD-GDLNQEEKEQN 68

Query: 622  XXXXXXXXXLKWSTDELDAISSLFQGRIPQKPGSLNKERXXXXXXXXXXXXXXXXMPKKH 801
                     + W +DE++AISSLFQGRIPQ+PG+LN+ER                 PKKH
Sbjct: 69   GD-------IVWESDEIEAISSLFQGRIPQRPGNLNRERPLPLPLPHKLRPLGPPSPKKH 121

Query: 802  VRRACPS-RASVCDQVYKNPNFLIHLAREIKSLDADKDVCDVLNRWVRFLRKGSLSLTIR 978
             R    S R+ +C++VYKNP+FLI LA++IK L+ D DV  VL+   RFLRKGSLSLTIR
Sbjct: 122  NRNVVVSLRSPICNKVYKNPSFLISLAKQIKCLNPDDDVSAVLDDCARFLRKGSLSLTIR 181

Query: 979  ELGHMDLPERALQTYCWAQEHPHLFPDDRILASTLEILARTRQLKKPFDLEKYTISASRS 1158
            ELGHM  P+RALQT+CWAQ+ P L+PDDRILAST+EILAR + LK P D +K+T  ASR 
Sbjct: 182  ELGHMGFPDRALQTFCWAQKQPQLYPDDRILASTVEILARNQDLKVPIDWQKFTSLASRG 241

Query: 1159 VIEALARGFIRGGSFSLARKLLLVAKANKRTLDPSIHAKLIWELGKNPDKYRLVLKLLNE 1338
            VIEA+ RGF++GG   LA KLL VAK +KR LD S++A+LI ELGKNPDKY LV +LL+E
Sbjct: 242  VIEAMIRGFLKGGRLKLAWKLLAVAKHDKRMLDASLYARLILELGKNPDKYMLVEQLLDE 301

Query: 1339 LAEMNDLKLNQQDCTAVMKVCVRLGKFEIVESLFKWFKESGRDISIVMYTTLIHSRYSEE 1518
            L E  DL L+ QDCTA+MKVC+RL KFE VE LF WFK+SG + S+VMYTTLIHSRYSE+
Sbjct: 302  LGEREDLNLSHQDCTAIMKVCIRLQKFEFVECLFTWFKQSGHEPSVVMYTTLIHSRYSEK 361

Query: 1519 KYREAMTLVWEMEGLNFLFDLPAYGVVIKLFVTLNDVSRAARYFSRLKEARFAPTYDIYR 1698
            KYREA+  VWEMEG +FLFDLPAY VVIKLFV LND+ RA RYFS+LKEA  +PTYDIYR
Sbjct: 362  KYREALAGVWEMEGSSFLFDLPAYRVVIKLFVALNDLPRAVRYFSKLKEAGLSPTYDIYR 421

Query: 1699 DLIKVYAASGRLAKCKELCKEVEMVGYKLDKQTESLLL 1812
            +LIK+Y  SGRLAKCKE+ KE EM G+KLD+Q +  LL
Sbjct: 422  NLIKIYLVSGRLAKCKEIWKEAEMAGFKLDEQIKMDLL 459


>ref|XP_002307797.1| predicted protein [Populus trichocarpa] gi|222857246|gb|EEE94793.1|
            predicted protein [Populus trichocarpa]
          Length = 475

 Score =  518 bits (1335), Expect = e-144
 Identities = 269/469 (57%), Positives = 334/469 (71%), Gaps = 1/469 (0%)
 Frame = +1

Query: 415  MAQSKAGHSQRKLPKNLRYPRRAKVTPEPKGSLYLKKKKVIDIEPFRMGFEYSEKPELMD 594
            MA S      RK+PKN+RYPRR+K+ P+   +L+LKK +   ++         E+ E ++
Sbjct: 1    MAHSSTRICYRKIPKNIRYPRRSKLPPDFGVNLFLKKPQTDSVQDHSDDLTEEEEEEEIE 60

Query: 595  KNAESXXXXXXXXXXXXXLKWSTDELDAISSLFQGRIPQKPGSLNKERXXXXXXXXXXXX 774
             N                + W ++E++AISSLF+GRIPQKPG L +ER            
Sbjct: 61   VN-------------NGEIVWESEEIEAISSLFRGRIPQKPGKLGRERPLPLPVPYKLRP 107

Query: 775  XXXXMPKKHVRRACP-SRASVCDQVYKNPNFLIHLAREIKSLDADKDVCDVLNRWVRFLR 951
                 PKKHV +    SRAS+  Q+YKNP+FLI LA+EIK L  D+DV  VL+   R+L 
Sbjct: 108  LGLPAPKKHVNKQVSLSRASISSQIYKNPSFLIGLAKEIKRLSPDQDVSVVLDNCSRYLH 167

Query: 952  KGSLSLTIRELGHMDLPERALQTYCWAQEHPHLFPDDRILASTLEILARTRQLKKPFDLE 1131
            KGSLSLTIRELGH+ LPERALQT+CW Q+ P LFPDDR+LAST+E+LAR   LK PF+LE
Sbjct: 168  KGSLSLTIRELGHLGLPERALQTFCWVQKQPRLFPDDRVLASTVEVLARNHDLKVPFNLE 227

Query: 1132 KYTISASRSVIEALARGFIRGGSFSLARKLLLVAKANKRTLDPSIHAKLIWELGKNPDKY 1311
            K+T  ASR VIEA+ +G IRGGS  L+ KL+ VAK  KR LDPS++AK+I ELGKNPDK+
Sbjct: 228  KFTNLASRRVIEAMVKGLIRGGSLKLSWKLISVAKDGKRMLDPSVYAKIILELGKNPDKH 287

Query: 1312 RLVLKLLNELAEMNDLKLNQQDCTAVMKVCVRLGKFEIVESLFKWFKESGRDISIVMYTT 1491
             L   LL+ELAE  DL L+QQDCTAVMKVC++LGKFE VESLF WF++SG + S+VMYTT
Sbjct: 288  VLAEALLDELAEREDLNLSQQDCTAVMKVCIKLGKFEAVESLFNWFRQSGHEPSVVMYTT 347

Query: 1492 LIHSRYSEEKYREAMTLVWEMEGLNFLFDLPAYGVVIKLFVTLNDVSRAARYFSRLKEAR 1671
            LIHSRYSE KYREA+ +VWEMEG + LFDL AY VVIKLFV LND+ RA RYFS+LKEA 
Sbjct: 348  LIHSRYSESKYREALAVVWEMEGSDCLFDLTAYRVVIKLFVALNDLPRAVRYFSKLKEAG 407

Query: 1672 FAPTYDIYRDLIKVYAASGRLAKCKELCKEVEMVGYKLDKQTESLLLQM 1818
             +PTYDIYR+LI +Y  SGRLAKCKE+ KE EM G+K  K+  + LLQ+
Sbjct: 408  LSPTYDIYRNLITLYMVSGRLAKCKEVWKEAEMAGFKFSKEMAAGLLQL 456


>ref|XP_003556649.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01860-like
            [Glycine max]
          Length = 480

 Score =  501 bits (1291), Expect = e-139
 Identities = 266/478 (55%), Positives = 341/478 (71%), Gaps = 6/478 (1%)
 Frame = +1

Query: 394  HFSRLTVMAQSKAGHSQRKLPKNLRYPRRAKVTPEPKGSLYLKKKKVIDIEPFRMGFEYS 573
            ++SR+T++A SK    +RK  K+ RY  R K  PE   +L+LKK               +
Sbjct: 21   NYSRVTLVAHSK----RRKPSKDNRYRPRPKQPPEFGVNLFLKKPST------------T 64

Query: 574  EKP--ELMDKNAESXXXXXXXXXXXXXLKWSTDELDAISSLFQGRIPQKPGSLNKERXXX 747
             KP  + MD N E+             + W +DEL+AISSLFQGRIPQKPG L++ER   
Sbjct: 65   SKPTEDDMDSNEENDEEEDGNIG----VVWESDELEAISSLFQGRIPQKPGKLDRERPLP 120

Query: 748  XXXXXXXXXXXXXMPKKHVRRACP----SRASVCDQVYKNPNFLIHLAREIKSLDADKDV 915
                          PK  V+   P    SRAS+  +VYK+P FL+ LAREI  L  D+DV
Sbjct: 121  LPVPYKLRPLGLPTPKTQVKLTAPAVVSSRASMAKKVYKSPRFLVGLAREISRLGPDEDV 180

Query: 916  CDVLNRWVRFLRKGSLSLTIRELGHMDLPERALQTYCWAQEHPHLFPDDRILASTLEILA 1095
              +L +WV+FLRKGSLSLTIRELGHM  PERALQT+ WAQ  PHLFPDD ILAST+E+LA
Sbjct: 181  SKILGKWVQFLRKGSLSLTIRELGHMGFPERALQTFLWAQNQPHLFPDDWILASTVEVLA 240

Query: 1096 RTRQLKKPFDLEKYTISASRSVIEALARGFIRGGSFSLARKLLLVAKANKRTLDPSIHAK 1275
            R  +L+ PF+L +YT  ASR V+EA+ +GFI+GG+  LA K+L+VA+ +KR LD SI+AK
Sbjct: 241  RNHELRIPFNLNQYTGLASRVVLEAMIKGFIKGGNLRLAWKVLIVARRDKRMLDSSIYAK 300

Query: 1276 LIWELGKNPDKYRLVLKLLNELAEMNDLKLNQQDCTAVMKVCVRLGKFEIVESLFKWFKE 1455
            LI ELGKNPD++R VL LL+ELAE ++L L+QQDCTA+MKVCV++GKFE+VE LF WFK+
Sbjct: 301  LILELGKNPDRHRHVLPLLDELAERDELNLSQQDCTAIMKVCVKMGKFEVVECLFSWFKQ 360

Query: 1456 SGRDISIVMYTTLIHSRYSEEKYREAMTLVWEMEGLNFLFDLPAYGVVIKLFVTLNDVSR 1635
            SG   S+VM+T++IHSRY+E+KYREA+ +VWEME  + LFDLPAY VVIKLFV LND+SR
Sbjct: 361  SGYHTSVVMFTSVIHSRYTEKKYREALAVVWEMESSSCLFDLPAYCVVIKLFVALNDLSR 420

Query: 1636 AARYFSRLKEARFAPTYDIYRDLIKVYAASGRLAKCKELCKEVEMVGYKLDKQTESLL 1809
            A RYFS+LKEA F+P++ +Y+D++ +Y ASGR+AKCKELCKE EM G+KLDK   S L
Sbjct: 421  ATRYFSKLKEAGFSPSFGLYKDMLHIYMASGRIAKCKELCKEAEMSGFKLDKYLVSQL 478