BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008027
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...   118   7e-25
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             117   1e-24
gb|ABI34372.1| RNase H family protein [Solanum demissum]              109   3e-22
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                108   4e-22
emb|CAN82687.1| hypothetical protein VITISV_006267 [Vitis vinifera]   107   1e-21

>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score =  118 bits (295), Expect = 7e-25
 Identities = 65/181 (35%), Positives = 103/181 (56%)
 Frame = -2

Query: 552  KAQAVAEFLAEFPAEDPTWGXXXXXXXXXXXETDFLDPWDKRNGWRVFVDGSATDTCSGI 373
            KAQ +A+F+ + P  D                   LD  +    W + VDGS+    SG+
Sbjct: 618  KAQVLADFVIKLPLAD-------------------LDGTNSNKKWLLHVDGSSNRQGSGV 658

Query: 372  GVVLVTPENNRIELTMKLGFAATSNEAEYEAVIAGMRMAEDLGVKELIVYSDSNLVVCQA 193
            G+ L +P    IE +++LGF A++NE+EYEA+IAG+++A++ G++E+  YSDS LV  Q 
Sbjct: 659  GIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYSDSQLVTSQF 718

Query: 192  NGGFTARCPRMAKYLEVLHKRSNKFEKIQFVHLGRGENRHADALAYVSAAMPGSEERIIS 13
            +G + A+  RM  YLE++   + +FE  +   + RGEN  AD LA +++      +RII 
Sbjct: 719  HGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALASTSDPFVKRIIP 778

Query: 12   V 10
            V
Sbjct: 779  V 779


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  117 bits (294), Expect = 1e-24
 Identities = 68/184 (36%), Positives = 101/184 (54%)
 Frame = -2

Query: 552 KAQAVAEFLAEFPAEDPTWGXXXXXXXXXXXETDFLDPWDKRNGWRVFVDGSATDTCSGI 373
           KAQ +A+FL E P                           +   W++ VDGS+T   S +
Sbjct: 426 KAQVLADFLTELPIPGTI-------------------ERPENQTWKLHVDGSSTKQGSVV 466

Query: 372 GVVLVTPENNRIELTMKLGFAATSNEAEYEAVIAGMRMAEDLGVKELIVYSDSNLVVCQA 193
           G+ L +P +  +E + +L F A++NEAEYEA+IAG+R+A+ +G KE++ Y DS LVV Q 
Sbjct: 467 GIKLESPTSEILEQSFRLLFDASNNEAEYEALIAGLRLAQGVGAKEILAYCDSQLVVNQF 526

Query: 192 NGGFTARCPRMAKYLEVLHKRSNKFEKIQFVHLGRGENRHADALAYVSAAMPGSEERIIS 13
           NG + A+  RM  YLEV    S  F K + + + RGEN  ADALA +++      +R+I 
Sbjct: 527 NGDYEAKDSRMEAYLEVAKDLSKNFSKFELIRILRGENTTADALAALASTSDPGLKRVIP 586

Query: 12  VRLL 1
           V  +
Sbjct: 587 VECI 590


>gb|ABI34372.1| RNase H family protein [Solanum demissum]
          Length = 1033

 Score =  109 bits (272), Expect = 3e-22
 Identities = 65/178 (36%), Positives = 96/178 (53%)
 Frame = -2

Query: 558 AEKAQAVAEFLAEFPAEDPTWGXXXXXXXXXXXETDFLDPWDKRNGWRVFVDGSATDTCS 379
           A KAQA+A+ LAE P +D                 D +    K  GW++F DG+A     
Sbjct: 357 AMKAQALADHLAENPIDDEYEPLKTYFPDEEVSCIDEVIH-SKDQGWKLFFDGAANKKGV 415

Query: 378 GIGVVLVTPENNRIELTMKLGFAATSNEAEYEAVIAGMRMAEDLGVKELIVYSDSNLVVC 199
           GIG VL++       +T +L F  T+N +EYEA I G+R+A D+G++EL+V  DS+L+V 
Sbjct: 416 GIGAVLMSESGEYFPITAQLRFYCTNNMSEYEACILGLRLAADMGIQELLVLGDSDLLVH 475

Query: 198 QANGGFTARCPRMAKYLEVLHKRSNKFEKIQFVHLGRGENRHADALAYVSAAMPGSEE 25
           Q  G +  R P++  Y   L     +F  I+F H+ R  N  ADALA +S+ +   +E
Sbjct: 476 QIQGEWETRDPKLIPYQHCLQDLCRRFVSIKFRHISRVHNEIADALATLSSMLQHPDE 533


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  108 bits (271), Expect = 4e-22
 Identities = 58/138 (42%), Positives = 84/138 (60%)
 Frame = -2

Query: 420 WRVFVDGSATDTCSGIGVVLVTPENNRIELTMKLGFAATSNEAEYEAVIAGMRMAEDLGV 241
           W V  DG++    +GIGVVL+TPE   +E +++LGF AT+NEAEYEA++AG +M   LG 
Sbjct: 534 WEVCTDGASNRKGAGIGVVLITPEKLVMEKSLRLGFIATNNEAEYEALLAGAQMVRHLGG 593

Query: 240 KELIVYSDSNLVVCQANGGFTARCPRMAKYLEVLHKRSNKFEKIQFVHLGRGENRHADAL 61
           + + +Y DS LV  Q NG F  R  RM KYLE +      F+  Q   + RG+N HAD L
Sbjct: 594 EVVELYCDSRLVFGQINGEFEVRDERMKKYLERVKGVLRLFKSFQVRQIPRGQNAHADLL 653

Query: 60  AYVSAAMPGSEERIISVR 7
           A ++ ++     + + V+
Sbjct: 654 AMLATSLGSKLPQTVMVK 671


>emb|CAN82687.1| hypothetical protein VITISV_006267 [Vitis vinifera]
          Length = 969

 Score =  107 bits (267), Expect = 1e-21
 Identities = 52/139 (37%), Positives = 89/139 (64%)
 Frame = -2

Query: 420 WRVFVDGSATDTCSGIGVVLVTPENNRIELTMKLGFAATSNEAEYEAVIAGMRMAEDLGV 241
           W + VDG++  + SG+G++L +P    +E  ++LGF+A++NEAEYEA+++G+ +A  L V
Sbjct: 454 WTLRVDGASRSSSSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSV 513

Query: 240 KELIVYSDSNLVVCQANGGFTARCPRMAKYLEVLHKRSNKFEKIQFVHLGRGENRHADAL 61
            +L +YSDS LVV      + A+  RMA+YL  +     +F +     + R +NRHADAL
Sbjct: 514 SKLRIYSDSQLVVRHVQKEYEAKDSRMARYLAKVRSTLQQFTEWTIEKIKRADNRHADAL 573

Query: 60  AYVSAAMPGSEERIISVRL 4
           A ++A++P  E  ++ + +
Sbjct: 574 AGIAASLPIKEAILLPIHV 592