BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008020
         (1490 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272223.1| PREDICTED: uncharacterized protein LOC100245...   397   e-108
ref|XP_002272303.2| PREDICTED: polyadenylate-binding protein [Vi...   394   e-107
emb|CBI34603.3| unnamed protein product [Vitis vinifera]              394   e-107
ref|XP_002518926.1| RNA-binding protein, putative [Ricinus commu...   389   e-105
ref|NP_174556.1| CTC-interacting domain 11 protein [Arabidopsis ...   386   e-105

>ref|XP_002272223.1| PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera]
            gi|302143972|emb|CBI23077.3| unnamed protein product
            [Vitis vinifera]
          Length = 361

 Score =  397 bits (1019), Expect = e-108
 Identities = 218/333 (65%), Positives = 247/333 (74%)
 Frame = +3

Query: 132  ENTVTETVPKHESNLEKNDLDENSVVVDHKKVQMNGTKYGFGNYDEKENGTRDEMKDLEE 311
            EN  ++ +P+ +     N +          K+QM G+   FG   ++E+G   +++DLE+
Sbjct: 56   ENYYSQKIPQFQQKAGSNGV---------AKIQMVGS---FGR--DREDG--GDIRDLED 99

Query: 312  LLSKLNPMAEEFIPTSLVMINGNNNNHGSFLMNGNFYGMQNKMGNGNANGYTGRRKXXXX 491
            LLSKLNPMAEEF+P SL   NG+  + G+     N + +Q   GN  ANG  GRRK    
Sbjct: 100  LLSKLNPMAEEFVPPSLA--NGHGWSAGAAFGYTNNFVLQANFGN--ANGNAGRRKRNNY 155

Query: 492  XXXXXXXXXXXXXXXXXXXXXXXXXXEDVIRRTVYVSDIDQQVTEEQLAMLFINCGHVVD 671
                                      E+VI+RTVYVSDIDQQVTEE LA LFINCG VVD
Sbjct: 156  NQKRRINSRTSMAQR-----------EEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVD 204

Query: 672  CRICGDPNSVLRFAFIEFTDEDGARNALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRS 851
            CRICGDPNSVLRFAF+EFTDE+GAR ALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRS
Sbjct: 205  CRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRS 264

Query: 852  EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAE 1031
            EDEREMCARTIYCTNIDKKVTQA+VKLFFES+CGEV+RLRLLGDYHHSTRIAFVEFVMAE
Sbjct: 265  EDEREMCARTIYCTNIDKKVTQAEVKLFFESICGEVHRLRLLGDYHHSTRIAFVEFVMAE 324

Query: 1032 SAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR 1130
            SAIAALNCSG +LGSLPIRVSPSKTPVRPRAPR
Sbjct: 325  SAIAALNCSGAILGSLPIRVSPSKTPVRPRAPR 357


>ref|XP_002272303.2| PREDICTED: polyadenylate-binding protein [Vitis vinifera]
          Length = 398

 Score =  394 bits (1013), Expect = e-107
 Identities = 208/295 (70%), Positives = 228/295 (77%)
 Frame = +3

Query: 255  GNYDEKENGTRDEMKDLEELLSKLNPMAEEFIPTSLVMINGNNNNHGSFLMNGNFYGMQN 434
            G + ++   +  +M++L+EL SKLNPMAEEF+P SL     NN  +G F  NG+     N
Sbjct: 122  GGHLQRNGDSGVDMRELQELFSKLNPMAEEFVPPSLA----NNGLNGGFYSNGS--ETHN 175

Query: 435  KMGNGNANGYTGRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVIRRTVYVSDIDQ 614
               NG  NG   RRK                              E++IRRTVYVSDIDQ
Sbjct: 176  NTRNGQVNG---RRKKNNFGQGKRRMNSRTSMAQR----------EEIIRRTVYVSDIDQ 222

Query: 615  QVTEEQLAMLFINCGHVVDCRICGDPNSVLRFAFIEFTDEDGARNALSLAGTMLGYYPVR 794
            QVTEE+LA LFI CG VVDCR+CGDPNSVLRFAF+EFTDE+GAR ALSLAGTMLGYYPVR
Sbjct: 223  QVTEEKLAALFITCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVR 282

Query: 795  VLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 974
            VLPSKTAIAPVNPTFLPR+EDEREMCARTIYCTNIDKKV+QADVKLFFESVCGEVYRLRL
Sbjct: 283  VLPSKTAIAPVNPTFLPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVCGEVYRLRL 342

Query: 975  LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRAPI 1139
            LGDYHHSTRIAFVEF+MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR PI
Sbjct: 343  LGDYHHSTRIAFVEFIMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPI 397


>emb|CBI34603.3| unnamed protein product [Vitis vinifera]
          Length = 397

 Score =  394 bits (1013), Expect = e-107
 Identities = 208/295 (70%), Positives = 228/295 (77%)
 Frame = +3

Query: 255  GNYDEKENGTRDEMKDLEELLSKLNPMAEEFIPTSLVMINGNNNNHGSFLMNGNFYGMQN 434
            G + ++   +  +M++L+EL SKLNPMAEEF+P SL     NN  +G F  NG+     N
Sbjct: 122  GGHLQRNGDSGVDMRELQELFSKLNPMAEEFVPPSLA----NNGLNGGFYSNGS--ETHN 175

Query: 435  KMGNGNANGYTGRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVIRRTVYVSDIDQ 614
               NG  NG   RRK                              E++IRRTVYVSDIDQ
Sbjct: 176  NTRNGQVNG---RRKNNFGQGKRRMNSRTSMAQR-----------EEIIRRTVYVSDIDQ 221

Query: 615  QVTEEQLAMLFINCGHVVDCRICGDPNSVLRFAFIEFTDEDGARNALSLAGTMLGYYPVR 794
            QVTEE+LA LFI CG VVDCR+CGDPNSVLRFAF+EFTDE+GAR ALSLAGTMLGYYPVR
Sbjct: 222  QVTEEKLAALFITCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVR 281

Query: 795  VLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 974
            VLPSKTAIAPVNPTFLPR+EDEREMCARTIYCTNIDKKV+QADVKLFFESVCGEVYRLRL
Sbjct: 282  VLPSKTAIAPVNPTFLPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVCGEVYRLRL 341

Query: 975  LGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRAPI 1139
            LGDYHHSTRIAFVEF+MAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPR PI
Sbjct: 342  LGDYHHSTRIAFVEFIMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPI 396


>ref|XP_002518926.1| RNA-binding protein, putative [Ricinus communis]
            gi|223541913|gb|EEF43459.1| RNA-binding protein, putative
            [Ricinus communis]
          Length = 379

 Score =  389 bits (998), Expect = e-105
 Identities = 208/308 (67%), Positives = 230/308 (74%), Gaps = 14/308 (4%)
 Frame = +3

Query: 258  NYDEKENGTRD---EMKDLEELLSKLNPMAEEFIPTSLV-------MINGNNNNHGSFLM 407
            ++ ++ +G  D   ++++L+EL SKLNPMAEEF+P SL         I+G N  +  F  
Sbjct: 82   HHHQRSSGGGDLQRDIRELQELFSKLNPMAEEFVPPSLANNKISNNYIHGLNGLNVGFYT 141

Query: 408  NGNFYG----MQNKMGNGNANGYTGRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXED 575
            N N Y     + N   NG  NG   RRK                              E+
Sbjct: 142  NNNNYDPAFMLTNASRNGQLNGSAARRKKNYNQGKRRLNSRTSMAQR-----------EE 190

Query: 576  VIRRTVYVSDIDQQVTEEQLAMLFINCGHVVDCRICGDPNSVLRFAFIEFTDEDGARNAL 755
            +IRRTVYVSDIDQQVTEEQLA LF+ CG VVDCRICGDPNSVLRFAFIEFT E+GAR AL
Sbjct: 191  IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTHEEGARAAL 250

Query: 756  SLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQADVKLF 935
            +LAGT+LGYYPVRVLPSKTAIAPVNPTFLPRS+DEREMC RTIYCTNIDKKVTQADVKLF
Sbjct: 251  NLAGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCIRTIYCTNIDKKVTQADVKLF 310

Query: 936  FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 1115
            FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR
Sbjct: 311  FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 370

Query: 1116 PRAPRAPI 1139
            PRAPR P+
Sbjct: 371  PRAPRIPM 378


>ref|NP_174556.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
            gi|6714278|gb|AAF25974.1|AC017118_11 F6N18.17
            [Arabidopsis thaliana] gi|332193408|gb|AEE31529.1|
            CTC-interacting domain 11 protein [Arabidopsis thaliana]
          Length = 358

 Score =  386 bits (992), Expect = e-105
 Identities = 208/298 (69%), Positives = 227/298 (76%), Gaps = 6/298 (2%)
 Frame = +3

Query: 264  DEKENGTRDEMKDLEELLSKLNPMAEEFIPTSLVMINGNNNNHG------SFLMNGNFYG 425
            D  E+  RD M++L+EL SKLNPMAEEF+P SL    GN  N G      SF  N  F G
Sbjct: 74   DGGESFKRD-MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAG 132

Query: 426  MQNKMGNGNANGYTGRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVIRRTVYVSD 605
              N  G GN NG   R+K                              EDVIRRTVYVSD
Sbjct: 133  TGNG-GYGNENGGFRRKKSFGQGKRRMNARTSMAQR------------EDVIRRTVYVSD 179

Query: 606  IDQQVTEEQLAMLFINCGHVVDCRICGDPNSVLRFAFIEFTDEDGARNALSLAGTMLGYY 785
            +DQQVTEEQLA LF++CG VVDCRICGDPNSVLRFAFIEFTDE+GA  AL+L+GTMLG+Y
Sbjct: 180  LDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFY 239

Query: 786  PVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR 965
            PV+VLPSKTAIAPVNPTFLPR+EDEREMCARTIYCTNIDKKVTQ+DVK+FFES CGEVYR
Sbjct: 240  PVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYR 299

Query: 966  LRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRAPI 1139
            LRLLGDY HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR+PR P+
Sbjct: 300  LRLLGDYQHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPM 357