BLASTX nr result

ID: Coptis25_contig00007947 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007947
         (603 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR17136.1| unknown [Picea sitchensis]                             139   3e-31
ref|XP_002517962.1| Peroxisomal membrane protein, putative [Rici...   138   8e-31
gb|ABK96261.1| unknown [Populus trichocarpa x Populus deltoides]      138   8e-31
ref|NP_564615.3| Peroxisomal membrane 22 kDa (Mpv17/PMP22) famil...   137   1e-30
ref|XP_002891718.1| hypothetical protein ARALYDRAFT_474411 [Arab...   137   1e-30

>gb|ABR17136.1| unknown [Picea sitchensis]
          Length = 294

 Score =  139 bits (351), Expect = 3e-31
 Identities = 72/89 (80%), Positives = 76/89 (85%), Gaps = 1/89 (1%)
 Frame = +3

Query: 3   SPASISSELKATFLPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSN 182
           SPA+I  ELKATF P+LTAGWKLWPFAHLITYGV+PVEQRLLWVDCVELIWVTILSTYSN
Sbjct: 206 SPANIFGELKATFWPLLTAGWKLWPFAHLITYGVVPVEQRLLWVDCVELIWVTILSTYSN 265

Query: 183 EKSEARS-EALLETNSKTQSISSED*IKR 266
           EKSEARS EAL E  S + S SS D  KR
Sbjct: 266 EKSEARSLEALPEGKSDSVSKSSSDVSKR 294


>ref|XP_002517962.1| Peroxisomal membrane protein, putative [Ricinus communis]
           gi|223542944|gb|EEF44480.1| Peroxisomal membrane
           protein, putative [Ricinus communis]
          Length = 344

 Score =  138 bits (347), Expect = 8e-31
 Identities = 69/84 (82%), Positives = 74/84 (88%), Gaps = 1/84 (1%)
 Frame = +3

Query: 3   SPASISSELKATFLPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSN 182
           SPA+I SEL ATF PMLTAGWKLWPF+HLITYGVIPVEQRLLWVDCVELIWVTILSTYSN
Sbjct: 257 SPANIFSELTATFWPMLTAGWKLWPFSHLITYGVIPVEQRLLWVDCVELIWVTILSTYSN 316

Query: 183 EKSEAR-SEALLETNSKTQSISSE 251
           EKSEAR SEA +E  SK+ S  +E
Sbjct: 317 EKSEARTSEATIEATSKSSSNHTE 340


>gb|ABK96261.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 369

 Score =  138 bits (347), Expect = 8e-31
 Identities = 70/85 (82%), Positives = 74/85 (87%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   SPASISSELKATFLPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSN 182
           SPASI SEL ATF PMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSN
Sbjct: 285 SPASIFSELTATFWPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSN 344

Query: 183 EKSEAR-SEALLETNSKTQSISSED 254
           EKSEAR SEA +E +S +   S E+
Sbjct: 345 EKSEARISEAAVEASSSSLPSSPEE 369


>ref|NP_564615.3| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
           [Arabidopsis thaliana]
           gi|12324641|gb|AAG52277.1|AC019018_14 unknown protein;
           54928-56750 [Arabidopsis thaliana]
           gi|14326545|gb|AAK60317.1|AF385726_1 At1g52870/F14G24_14
           [Arabidopsis thaliana] gi|25090145|gb|AAN72239.1|
           At1g52870/F14G24_14 [Arabidopsis thaliana]
           gi|332194741|gb|AEE32862.1| Peroxisomal membrane 22 kDa
           (Mpv17/PMP22) family protein [Arabidopsis thaliana]
          Length = 366

 Score =  137 bits (346), Expect = 1e-30
 Identities = 66/78 (84%), Positives = 73/78 (93%), Gaps = 1/78 (1%)
 Frame = +3

Query: 3   SPASISSELKATFLPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSN 182
           SP SI  ELKATFLPMLTAGWKLWPFAHLITYG++PVEQRLLWVDCVELIWVTILSTYSN
Sbjct: 280 SPISIFKELKATFLPMLTAGWKLWPFAHLITYGLVPVEQRLLWVDCVELIWVTILSTYSN 339

Query: 183 EKSEAR-SEALLETNSKT 233
           EKSEAR SE+++ET+S +
Sbjct: 340 EKSEARISESVIETSSSS 357


>ref|XP_002891718.1| hypothetical protein ARALYDRAFT_474411 [Arabidopsis lyrata subsp.
           lyrata] gi|297337560|gb|EFH67977.1| hypothetical protein
           ARALYDRAFT_474411 [Arabidopsis lyrata subsp. lyrata]
          Length = 360

 Score =  137 bits (346), Expect = 1e-30
 Identities = 66/78 (84%), Positives = 73/78 (93%), Gaps = 1/78 (1%)
 Frame = +3

Query: 3   SPASISSELKATFLPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSN 182
           SP SI  ELKATFLPMLTAGWKLWPFAHLITYG++PVEQRLLWVDCVELIWVTILSTYSN
Sbjct: 274 SPLSIFKELKATFLPMLTAGWKLWPFAHLITYGLVPVEQRLLWVDCVELIWVTILSTYSN 333

Query: 183 EKSEAR-SEALLETNSKT 233
           EKSEAR SE+++ET+S +
Sbjct: 334 EKSEARISESVIETSSSS 351


Top