BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007921
         (808 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   122   7e-26
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...   113   6e-23
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...   112   7e-23
gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japo...   109   6e-22
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g...   109   6e-22

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  122 bits (307), Expect = 7e-26
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 14/242 (5%)
 Frame = -3

Query: 689 NIWFLWRRGINAALIQASSQHITVMVN----NCVISAVHANCLMVNIRALWQDLSSLNP- 525
           N+W LW R ++A ++  S Q I + ++       ++AV+A+   +  R LW +L++L   
Sbjct: 68  NLWALWGREVSAIVMFISDQCIALEISCHQSTVYVAAVYASTFYLKRRQLWAELTNLQGC 127

Query: 524 -SAPWVVVGDFNVVLQYAEKKGGLIPRRAVMSEFYDWYNVCNLQESSFVGSRYTWCNNQH 348
              PW+ +GDFN VL   EK+    P      +F +W N   L     +G+ YTW N + 
Sbjct: 128 FQGPWLFIGDFNAVLGAHEKRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFYTWSNGRL 187

Query: 347 GQGRIVSKLDRIFFNQAWLQKFPEWRYRVDSRAG--------SDHAPLIGGMANIPRPSN 192
           G   +  +LDR   N+ W+     WR    S  G        SDH PL+  M       +
Sbjct: 188 GSDNVALRLDRAICNEEWVN---FWRSSSCSALGNSALVRHQSDHHPLLMSMDFCTSQRS 244

Query: 191 VPFRFNKAWISHESFLDLMKTSWLHYIAGTPIFRVGKKLKMLKEVLKGWNTNVFGNIEDN 12
             F+F K W  HE    ++  +W  +  G  + R+  KLK +K+V + WN  VFG+++  
Sbjct: 245 GNFKFFKTWTEHEDCRRIVAENWSKHTRGHGMTRLQAKLKHMKQVFRHWNRTVFGDVDRK 304

Query: 11  IK 6
           ++
Sbjct: 305 VR 306


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
            predicted protein [Populus trichocarpa]
          Length = 819

 Score =  113 bits (282), Expect = 6e-23
 Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 10/276 (3%)
 Frame = -3

Query: 803  VFCVAEPKTKPTSSTLLSLGLAYFDYQFFHNDSDSRIGNIWFLWRRGINAALI-----QA 639
            +F + E + K  +   +S  L    + F +N   S  G IW  W        +     QA
Sbjct: 408  LFGLVETRVKDKNKDNVSQ-LLLRSWSFLYNYDFSCRGRIWVCWNADTVKVDVFGMSDQA 466

Query: 638  SSQHITVMVNNCVI--SAVHANCLMVNIRALWQDLSSLNP---SAPWVVVGDFNVVLQYA 474
                +T++  N     S ++ +       ALW D+ S +    S  W+++GDFN +   +
Sbjct: 467  IHVSVTILATNISFNTSIIYGDNNASLREALWSDIVSRSDGWESTLWILIGDFNAIRNQS 526

Query: 473  EKKGGLIPRRAVMSEFYDWYNVCNLQESSFVGSRYTWCNNQHGQGRIVSKLDRIFFNQAW 294
            ++ GG       M           + +  + G  YTW +NQ  +  I+ KLDR+  N+ W
Sbjct: 527  DRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTW-SNQCPENLIMRKLDRVLVNEKW 585

Query: 293  LQKFPEWRYRVDSRAGSDHAPLIGGMANIPRPSNVPFRFNKAWISHESFLDLMKTSWLHY 114
              KFP    R      SDH+P++  +    +    PFRF   W+ H+ F+ L+K  W   
Sbjct: 586  NLKFPLSEARFLPSGMSDHSPMVVKVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQN 645

Query: 113  IAGTPIFRVGKKLKMLKEVLKGWNTNVFGNIEDNIK 6
              G P++++  KL+ LK+ LK +N   F NI D ++
Sbjct: 646  SRGCPMYQLCCKLRKLKQELKLFNMAHFSNISDRVR 681


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score =  112 bits (281), Expect = 7e-23
 Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 10/276 (3%)
 Frame = -3

Query: 803 VFCVAEPKTKPTSSTLLSLGLAYFDYQFFHNDSDSRIGNIWFLWRRGINAALI-----QA 639
           +F + E + K  +   +S  L    + F +N   S  G IW  W        +     QA
Sbjct: 31  LFGLVETRVKDKNKDNVSQ-LLLRSWSFLYNYDFSCRGRIWVCWNADTVKVDVFGMSDQA 89

Query: 638 SSQHITVMVNNCVI--SAVHANCLMVNIRALWQDLSSLNP---SAPWVVVGDFNVVLQYA 474
               +T++  N     S ++ +       ALW D+ S +    S PW+++GDFN +   +
Sbjct: 90  IHVSVTILATNISFNTSIIYGDNNASLREALWSDIVSRSDGWESTPWILMGDFNAIRNQS 149

Query: 473 EKKGGLIPRRAVMSEFYDWYNVCNLQESSFVGSRYTWCNNQHGQGRIVSKLDRIFFNQAW 294
           +K GG       M           + +  + G  YTW +NQ  +  I+ KLDR+  N+ W
Sbjct: 150 DKLGGSTTWAGTMHRLDTCIREAKVDDLWYSGMHYTW-SNQCPENLIMRKLDRVLVNEKW 208

Query: 293 LQKFPEWRYRVDSRAGSDHAPLIGGMANIPRPSNVPFRFNKAWISHESFLDLMKTSWLHY 114
              FP    R      SDH+P++  +    +    PFRF   W+ H+ F+ L+K  W   
Sbjct: 209 NLNFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQN 268

Query: 113 IAGTPIFRVGKKLKMLKEVLKGWNTNVFGNIEDNIK 6
             G P++++  KL+  K+ LK +N   F NI D +K
Sbjct: 269 SGGCPMYQLCCKLRKQKQELKLFNMAHFSNISDRVK 304


>gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japonica Group]
          Length = 915

 Score =  109 bits (273), Expect = 6e-22
 Identities = 70/202 (34%), Positives = 96/202 (47%), Gaps = 12/202 (5%)
 Frame = -3

Query: 692 GNIWFLWRRGINAALIQASSQHITVMVN-----NCVISAVHANCLMVNIRALWQDLSSL- 531
           G I  LWRR I+ +L   S  HI V +      +     V+           W  L SL 
Sbjct: 298 GGIAVLWRRRIDVSLRSMSKYHIDVDIEEGGGGSWRFIGVYGEAQSDLRFKTWDTLRSLA 357

Query: 530 -NPSAPWVVVGDFNVVLQYAEKKGGLIPRRAVMSEFYDWYNVCNLQESSFVGSRYTWCNN 354
            NP+ PW++ GDFN +L  AEK+GG    +A M +F D    C L +  F G  +TW NN
Sbjct: 358 MNPAQPWLMAGDFNEILVAAEKQGGRPKCQAQMDKFRDTLADCGLIDIGFEGDMFTWRNN 417

Query: 353 QH-GQGRIVSKLDRIFFNQAWLQKFPEWRYRVDSRAGSDHAPLI----GGMANIPRPSNV 189
            H  +G I   LDR   NQ W  KFP +R        SDH P+I    GG   + +  + 
Sbjct: 418 SHTEEGYIREHLDRAVANQEWRVKFPSFRVVNGDPRHSDHRPVIITTCGGRKGVMQRGSS 477

Query: 188 PFRFNKAWISHESFLDLMKTSW 123
            FRF  AW++ E   +++  +W
Sbjct: 478 SFRFEAAWLAEEKCREVVSENW 499


>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
           gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
           Japonica Group]
          Length = 1453

 Score =  109 bits (273), Expect = 6e-22
 Identities = 70/202 (34%), Positives = 96/202 (47%), Gaps = 12/202 (5%)
 Frame = -3

Query: 692 GNIWFLWRRGINAALIQASSQHITVMVN-----NCVISAVHANCLMVNIRALWQDLSSL- 531
           G I  LWRR I+ +L   S  HI V +      +     V+           W  L SL 
Sbjct: 335 GGIAVLWRRRIDVSLRSMSKYHIDVDIEEGGGGSWRFIGVYGEAQSDLRFKTWDTLRSLA 394

Query: 530 -NPSAPWVVVGDFNVVLQYAEKKGGLIPRRAVMSEFYDWYNVCNLQESSFVGSRYTWCNN 354
            NP+ PW++ GDFN +L  AEK+GG    +A M +F D    C L +  F G  +TW NN
Sbjct: 395 MNPAQPWLMAGDFNEILVAAEKQGGRPKCQAQMDKFRDTLADCGLIDIGFEGDMFTWRNN 454

Query: 353 QH-GQGRIVSKLDRIFFNQAWLQKFPEWRYRVDSRAGSDHAPLI----GGMANIPRPSNV 189
            H  +G I   LDR   NQ W  KFP +R        SDH P+I    GG   + +  + 
Sbjct: 455 SHTEEGYIREHLDRAVANQEWRVKFPSFRVVNGDPRHSDHRPVIITTCGGRKGVMQRGSS 514

Query: 188 PFRFNKAWISHESFLDLMKTSW 123
            FRF  AW++ E   +++  +W
Sbjct: 515 SFRFEAAWLAEEKCREVVSENW 536