BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007862
         (203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...    98   6e-19
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...    97   1e-18
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...    97   1e-18
gb|AAM65319.1| DNA-directed RNA polymerase II, third largest sub...    97   1e-18
emb|CBI40277.3| unnamed protein product [Vitis vinifera]               97   2e-18

>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
           gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata
           subsp. lyrata]
          Length = 319

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +2

Query: 2   TVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 154
           TVESTGAVKASQLV+NAID+LKQKLDAVRLSDDTVEADDQFGELG+HMRGG
Sbjct: 269 TVESTGAVKASQLVLNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 46/51 (90%), Positives = 51/51 (100%)
 Frame = +2

Query: 2   TVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 154
           TVESTGA+KASQL++NAID+LKQKLDAVRLSDDTVEADDQFGELG+HMRGG
Sbjct: 270 TVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG 320


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
           thaliana] gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName:
           Full=DNA-directed RNA polymerase II subunit RPB3-A;
           Short=RNA polymerase II subunit 3-A; Short=RNA
           polymerase II subunit B3-A; AltName: Full=DNA-directed
           RNA polymerase II 36 kDa polypeptide A
           gi|514318|gb|AAB03741.1| RNA polymerase II third largest
           subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
           DNA-directed RNA polymerase II, third largest subunit
           [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
           putative DNA-directed RNA polymerase II third largest
           subunit [Arabidopsis thaliana]
           gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
           polymerase II [Arabidopsis thaliana]
           gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
           II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +2

Query: 2   TVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 154
           TVESTGAVKASQLV+NAID+LKQKLDAVRLSDDTVEADDQFGELG+HMRGG
Sbjct: 269 TVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319


>gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
           thaliana]
          Length = 319

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +2

Query: 2   TVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 154
           TVESTGAVKASQLV+NAID+LKQKLDAVRLSDDTVEADDQFGELG+HMRGG
Sbjct: 269 TVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319


>emb|CBI40277.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 47/51 (92%), Positives = 51/51 (100%)
 Frame = +2

Query: 2   TVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 154
           TVESTGA+KASQLV+NAIDVLKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 156 TVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 206