BLASTX nr result
ID: Coptis25_contig00007842
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00007842
(1180 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002323345.1| predicted protein [Populus trichocarpa] gi|1... 49 4e-11
ref|XP_002308351.1| predicted protein [Populus trichocarpa] gi|2... 49 4e-11
ref|XP_003638099.1| Carbon catabolite repressor protein-like pro... 49 5e-11
ref|NP_191417.2| carbon catabolite repressor protein 4-like 2 [A... 47 1e-10
ref|XP_002878228.1| hypothetical protein ARALYDRAFT_907339 [Arab... 47 1e-10
>ref|XP_002323345.1| predicted protein [Populus trichocarpa] gi|118486421|gb|ABK95050.1|
unknown [Populus trichocarpa]
gi|222867975|gb|EEF05106.1| predicted protein [Populus
trichocarpa]
Length = 603
Score = 49.3 bits (116), Expect(3) = 4e-11
Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 450 VWSTHILAGEDYPDVKLWQVARLLESLEKI-REPRIPILLCGDLNS 584
V +THI +D DVKLWQV LL+ LEKI IP+L+CGD NS
Sbjct: 419 VANTHINVHQDLKDVKLWQVLTLLKGLEKIAASADIPMLVCGDFNS 464
Score = 42.7 bits (99), Expect(3) = 4e-11
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = +2
Query: 263 FYRFDRFKKVKEYELNFCDLAGPSIDRMHPH-DRQEGIRRLCKENVAIATIL----CNRE 427
F+R DRF VK+YE+ F A D + P R+ + RL K+NVA+ +L N+
Sbjct: 348 FFRRDRFSHVKKYEVEFNKAAQSLTDALVPSAQRKTALNRLVKDNVALIVVLEAKFSNQG 407
Query: 428 *TLP---STICVVNTHFS 472
P +CV NTH +
Sbjct: 408 ADNPGKRQLLCVANTHIN 425
Score = 22.3 bits (46), Expect(3) = 4e-11
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 238 SVDGCATFF 264
++DGCATFF
Sbjct: 341 TIDGCATFF 349
>ref|XP_002308351.1| predicted protein [Populus trichocarpa] gi|222854327|gb|EEE91874.1|
predicted protein [Populus trichocarpa]
Length = 602
Score = 49.3 bits (116), Expect(3) = 4e-11
Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 450 VWSTHILAGEDYPDVKLWQVARLLESLEKI-REPRIPILLCGDLNS 584
V +THI +D DVKLWQV LL+ LEKI IP+L+CGD NS
Sbjct: 418 VANTHINVHQDLKDVKLWQVLTLLKGLEKIAASADIPMLVCGDFNS 463
Score = 42.7 bits (99), Expect(3) = 4e-11
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = +2
Query: 263 FYRFDRFKKVKEYELNFCDLAGPSIDRMHPH-DRQEGIRRLCKENVAIATIL----CNRE 427
F+R DRF VK+YE+ F A D + P R+ + RL K+NVA+ +L N+
Sbjct: 347 FFRRDRFSHVKKYEVEFNKAAQSLTDALVPSAQRKTALNRLVKDNVALIVVLEAKFSNQG 406
Query: 428 *TLP---STICVVNTHFS 472
P +CV NTH +
Sbjct: 407 VDNPGKRQLLCVANTHIN 424
Score = 22.3 bits (46), Expect(3) = 4e-11
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 238 SVDGCATFF 264
++DGCATFF
Sbjct: 340 TIDGCATFF 348
>ref|XP_003638099.1| Carbon catabolite repressor protein-like protein [Medicago
truncatula] gi|355504034|gb|AES85237.1| Carbon
catabolite repressor protein-like protein [Medicago
truncatula]
Length = 390
Score = 48.5 bits (114), Expect(3) = 5e-11
Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 450 VWSTHILAGEDYPDVKLWQVARLLESLEKIR-EPRIPILLCGDLNS 584
V +TH+ +D DVKLWQV LL+ LEKI IP+L+CGD NS
Sbjct: 191 VANTHVNVHQDLKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNS 236
Score = 43.1 bits (100), Expect(3) = 5e-11
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +2
Query: 263 FYRFDRFKKVKEYELNFCDLAGPSIDRMHPHDRQE-GIRRLCKENVAIATILCNRE*TLP 439
F+R DRF VK+YE+ F A D M P +++ + RL K+NVA+ +L + P
Sbjct: 120 FFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTTQKKIALNRLVKDNVALIVVLEAKVNNQP 179
Query: 440 -------STICVVNTH 466
+CV NTH
Sbjct: 180 VDNPGKRQLLCVANTH 195
Score = 22.3 bits (46), Expect(3) = 5e-11
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 238 SVDGCATFF 264
++DGCATFF
Sbjct: 113 TIDGCATFF 121
>ref|NP_191417.2| carbon catabolite repressor protein 4-like 2 [Arabidopsis thaliana]
gi|215275269|sp|Q9M2F8.2|CCR4B_ARATH RecName:
Full=Carbon catabolite repressor protein 4 homolog 2;
Short=CCR4 homolog 2 gi|332646280|gb|AEE79801.1| carbon
catabolite repressor protein 4-like 2 [Arabidopsis
thaliana]
Length = 603
Score = 47.4 bits (111), Expect(3) = 1e-10
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 450 VWSTHILAGEDYPDVKLWQVARLLESLEKI-REPRIPILLCGDLNS 584
V +TH+ +D DVKLWQV LL+ LEKI IP+L+CGD N+
Sbjct: 417 VANTHVNVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNT 462
Score = 42.7 bits (99), Expect(3) = 1e-10
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 263 FYRFDRFKKVKEYELNFCDLAGPSIDRMHPH-DRQEGIRRLCKENVAIATIL---CNRE* 430
F+R DRF VK+Y++ F A D + P ++ + RL K+N+A+ +L +
Sbjct: 346 FFRRDRFSHVKKYDVEFNKAAQSLTDALIPQAQKRTALNRLVKDNIALIVVLEAKFGNQP 405
Query: 431 TLPS----TICVVNTH 466
T PS ICV NTH
Sbjct: 406 TDPSGKRQLICVANTH 421
Score = 22.3 bits (46), Expect(3) = 1e-10
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 238 SVDGCATFF 264
++DGCATFF
Sbjct: 339 AIDGCATFF 347
>ref|XP_002878228.1| hypothetical protein ARALYDRAFT_907339 [Arabidopsis lyrata subsp.
lyrata] gi|297324066|gb|EFH54487.1| hypothetical protein
ARALYDRAFT_907339 [Arabidopsis lyrata subsp. lyrata]
Length = 602
Score = 47.4 bits (111), Expect(3) = 1e-10
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 450 VWSTHILAGEDYPDVKLWQVARLLESLEKI-REPRIPILLCGDLNS 584
V +TH+ +D DVKLWQV LL+ LEKI IP+L+CGD N+
Sbjct: 417 VANTHVNVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNT 462
Score = 42.7 bits (99), Expect(3) = 1e-10
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 263 FYRFDRFKKVKEYELNFCDLAGPSIDRMHPH-DRQEGIRRLCKENVAIATIL---CNRE* 430
F+R DRF VK+Y++ F A D + P ++ + RL K+N+A+ +L +
Sbjct: 346 FFRRDRFSHVKKYDVEFNKAAQSLTDALIPQTQKRAALNRLVKDNIALIVVLEAKFGNQP 405
Query: 431 TLPS----TICVVNTH 466
T PS ICV NTH
Sbjct: 406 TDPSGKRQLICVANTH 421
Score = 22.3 bits (46), Expect(3) = 1e-10
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 238 SVDGCATFF 264
++DGCATFF
Sbjct: 339 AIDGCATFF 347