BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007794
         (623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I...   111   9e-23
ref|XP_002317630.1| predicted protein [Populus trichocarpa] gi|3...   111   9e-23
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ...   110   3e-22
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I...   108   8e-22
ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_...   108   1e-21

>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Vitis vinifera]
           gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4 [Vitis
           vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
           product [Vitis vinifera]
          Length = 51

 Score =  111 bits (278), Expect = 9e-23
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +1

Query: 37  MDPQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 189
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_002317630.1| predicted protein [Populus trichocarpa]
           gi|356531072|ref|XP_003534102.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Glycine max] gi|356560019|ref|XP_003548293.1|
           PREDICTED: DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 [Glycine max] gi|222860695|gb|EEE98242.1|
           predicted protein [Populus trichocarpa]
           gi|255630274|gb|ACU15492.1| unknown [Glycine max]
          Length = 51

 Score =  111 bits (278), Expect = 9e-23
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +1

Query: 37  MDPQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 189
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
           1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
           DNA-directed RNA polymerase I, II, and III polypeptide
           isoform 2, partial [Zea mays]
          Length = 100

 Score =  110 bits (274), Expect = 3e-22
 Identities = 51/54 (94%), Positives = 53/54 (98%), Gaps = 1/54 (1%)
 Frame = +1

Query: 31  SSMDPQ-PEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 189
           S+MDPQ PEPVSY+CGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 47  STMDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 100


>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Cucumis sativus]
           gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Cucumis sativus]
          Length = 51

 Score =  108 bits (270), Expect = 8e-22
 Identities = 49/51 (96%), Positives = 49/51 (96%)
 Frame = +1

Query: 37  MDPQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 189
           MDPQPEPVSYICGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_001172391.1|
           Os01g0530366 [Oryza sativa Japonica Group]
           gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza
           sativa Japonica Group] gi|242048352|ref|XP_002461922.1|
           hypothetical protein SORBIDRAFT_02g010660 [Sorghum
           bicolor] gi|242078439|ref|XP_002443988.1| hypothetical
           protein SORBIDRAFT_07g005435 [Sorghum bicolor]
           gi|195609858|gb|ACG26759.1| DNA-directed RNA polymerases
           I, II, and III 7.3 kDa polypeptide [Zea mays]
           gi|195620974|gb|ACG32317.1| DNA-directed RNA polymerases
           I, II, and III 7.3 kDa polypeptide [Zea mays]
           gi|195645780|gb|ACG42358.1| DNA-directed RNA polymerases
           I, II, and III 7.3 kDa polypeptide [Zea mays]
           gi|195646246|gb|ACG42591.1| DNA-directed RNA polymerases
           I, II, and III 7.3 kDa polypeptide [Zea mays]
           gi|218188380|gb|EEC70807.1| hypothetical protein
           OsI_02267 [Oryza sativa Indica Group]
           gi|222618595|gb|EEE54727.1| hypothetical protein
           OsJ_02072 [Oryza sativa Japonica Group]
           gi|241925299|gb|EER98443.1| hypothetical protein
           SORBIDRAFT_02g010660 [Sorghum bicolor]
           gi|241940338|gb|EES13483.1| hypothetical protein
           SORBIDRAFT_07g005435 [Sorghum bicolor]
           gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa
           Japonica Group] gi|255676033|dbj|BAH92949.1|
           Os05g0151800 [Oryza sativa Japonica Group]
          Length = 52

 Score =  108 bits (269), Expect = 1e-21
 Identities = 50/52 (96%), Positives = 51/52 (98%), Gaps = 1/52 (1%)
 Frame = +1

Query: 37  MDPQ-PEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 189
           MDPQ PEPVSY+CGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52