BLASTX nr result
ID: Coptis25_contig00007742
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00007742 (2688 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002534335.1| RNA binding protein, putative [Ricinus commu... 643 0.0 ref|XP_002270665.1| PREDICTED: zinc finger CCCH domain-containin... 627 0.0 ref|XP_002320513.1| predicted protein [Populus trichocarpa] gi|2... 614 0.0 emb|CBI28414.3| unnamed protein product [Vitis vinifera] 556 e-173 ref|XP_002529054.1| RNA binding protein, putative [Ricinus commu... 519 e-157 >ref|XP_002534335.1| RNA binding protein, putative [Ricinus communis] gi|223525472|gb|EEF28048.1| RNA binding protein, putative [Ricinus communis] Length = 578 Score = 643 bits (1659), Expect(2) = 0.0 Identities = 326/520 (62%), Positives = 389/520 (74%), Gaps = 2/520 (0%) Frame = -1 Query: 2271 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 2092 MDFTE+TK VY+RIQ LEP++VSKIIGYLLLQD+ ER+MIRLAF PD I SLIT+AK + Sbjct: 1 MDFTESTKVVYNRIQKLEPENVSKIIGYLLLQDHSEREMIRLAFSPDNLIYSLITKAKSD 60 Query: 2091 LGLSPKPGISAPIPPASMNLAPTSDLPLQFTXXXXXXXXXXXXXA-TLRVAPPYWDPLVM 1915 LGL+ KP +SAPI P+ +N +P SD+PLQFT A + R A YWD V Sbjct: 61 LGLN-KPALSAPISPSQVNTSPVSDIPLQFTPFSPASAHPISSPAASRRTASAYWDAQVT 119 Query: 1914 VDQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTL 1735 DQQ + N+DF SP YSDTV +DYR N QFL+L+DQ + + DFSSN+FY + L Sbjct: 120 GDQQQVPNLDFGSPGYSDTVPEDYRLQNHMQFLTLDDQFEFAHSVNSDFSSNYFYSEPAL 179 Query: 1734 GNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIFSPNSNDLI 1555 G RT+RRSPSLPEFP+K CHYF+KG+CKHG++CRY HG P+P+ FSQIFS SND Sbjct: 180 G---PRTNRRSPSLPEFPLKICHYFSKGYCKHGNNCRYVHGHPMPEGFSQIFSTKSNDFS 236 Query: 1554 TDDHFL-PGSXXXXXXXXXXXXKSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHG 1378 D+H + PGS KSRRG PVSIASLP++Y EKYG+TLQAEGYLTESQRHG Sbjct: 237 NDEHVVSPGSLEKLEMELAELLKSRRGMPVSIASLPMMYYEKYGKTLQAEGYLTESQRHG 296 Query: 1377 KAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYL 1198 KAGYSLTKLLARLKNSIR+IDRPHGQH+V+L ED P+Y+EY +R+DPGG+VAGSRQIYL Sbjct: 297 KAGYSLTKLLARLKNSIRVIDRPHGQHSVILEEDVPKYLEYVGERNDPGGIVAGSRQIYL 356 Query: 1197 TFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVC 1018 TFPAES FTE DVS YF FGPVQDVRIPCQQKRMFGFVTF++ ETVK IL KGNPH+VC Sbjct: 357 TFPAESIFTEHDVSIYFSKFGPVQDVRIPCQQKRMFGFVTFIFVETVKQILAKGNPHYVC 416 Query: 1017 GARVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFME 838 GARVLVKPYREKSRL+DRK++EK P+Y S+F+D + E+ P + D SRLLRKQ ME Sbjct: 417 GARVLVKPYREKSRLIDRKFSEKLQHPMYNSSHFIDGDSELHPMPTISDNSRLLRKQLME 476 Query: 837 DHXXXXXXXXXXXXXXXLGHRPLAHQPYFGYSMDDLKVSD 718 ++ LG + L HQ Y G SMD+LK+S+ Sbjct: 477 ENEHALEFERRRLLEFHLGPKSLNHQSYLGCSMDELKLSE 516 Score = 81.6 bits (200), Expect(2) = 0.0 Identities = 40/63 (63%), Positives = 50/63 (79%) Frame = -3 Query: 667 DQSEFTSRDRFNYLFDVFNNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSIS 488 + +EF S +RFNYL DV NNGS+S+ K R S NY+DQ+SQG+NLPESPFASP+ S IS Sbjct: 517 EHAEFPSAERFNYLLDVLNNGSSSEGKFRRI-STNYNDQDSQGINLPESPFASPIRSGIS 575 Query: 487 TVI 479 TV+ Sbjct: 576 TVM 578 >ref|XP_002270665.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like [Vitis vinifera] Length = 572 Score = 627 bits (1617), Expect(2) = 0.0 Identities = 325/520 (62%), Positives = 383/520 (73%), Gaps = 5/520 (0%) Frame = -1 Query: 2271 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 2092 MDF+E+TK VY+RIQ LEP++VSKIIGYLLLQD+GERDMIR AF D +IQ LI +AK E Sbjct: 1 MDFSESTKVVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRRAFTSDNAIQCLINKAKAE 60 Query: 2091 LGLSPKPGISAPIPPASMNLAPTSDLPLQFTXXXXXXXXXXXXXATLRVAPPYWDPLVMV 1912 LGLS KP +S+PI P +N +P SDLPLQFT R YWDP V Sbjct: 61 LGLSSKPAVSSPISPPQVNPSPVSDLPLQFTPFSPASARPFPSP---RPGNSYWDPQVNG 117 Query: 1911 DQQPLHNM-DFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTL 1735 DQQ +H + DF+ YSD++ DD+R +Q FL++EDQL+ N G +FS +++Y + L Sbjct: 118 DQQQVHKLGDFVPQGYSDSLPDDFRLQSQIHFLAMEDQLE--NSVGSEFSGSYYYAEQAL 175 Query: 1734 GNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIFSPNSNDLI 1555 + R SRRSPSLPEFP+K CHYFNKGFCKHG+SCRYFHG P+ +SFSQIFSP +N+L Sbjct: 176 ---NTRISRRSPSLPEFPLKVCHYFNKGFCKHGNSCRYFHGHPMLESFSQIFSPGANELP 232 Query: 1554 TDDH-FLPGSXXXXXXXXXXXXKSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHG 1378 DDH F PGS KSRRGCPVSIASLP++Y EKYGRTLQAEGYLTESQRHG Sbjct: 233 NDDHVFPPGSLEKLELELTELLKSRRGCPVSIASLPMMYYEKYGRTLQAEGYLTESQRHG 292 Query: 1377 KAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYL 1198 KAGYSLTKLLARLKNSIRLIDRPHGQH+V+LAED P+YME +RSDPG +V S+QIYL Sbjct: 293 KAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDLPKYMEVNGERSDPGAIVGSSKQIYL 352 Query: 1197 TFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVC 1018 TFPA+STFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK ILTKGNPH++C Sbjct: 353 TFPADSTFTEQDVSNYFNKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILTKGNPHYIC 412 Query: 1017 GARVLVKPYREK--SRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRK-Q 847 GARVLVKPYREK SR VDR+ + P+YY +F+D + E+Q PR+CD SRLLRK Q Sbjct: 413 GARVLVKPYREKASSRTVDRRQH-----PMYYSPHFIDEDSELQSIPRVCDNSRLLRKQQ 467 Query: 846 FMEDHXXXXXXXXXXXXXXXLGHRPLAHQPYFGYSMDDLK 727 ME+H L P PYFGYSMD+ K Sbjct: 468 LMEEHEQALELERRRLSELQL--TPKTAHPYFGYSMDEFK 505 Score = 81.3 bits (199), Expect(2) = 0.0 Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 1/66 (1%) Frame = -3 Query: 676 AHRDQSEFTSRDRFNYLFDVFNNGSTSDDKGRHSNSNNYSDQE-SQGLNLPESPFASPMG 500 AH +Q+EF S +R NYL +V NNGSTS+D+ S NY++QE SQGLNLPESPFASP+ Sbjct: 511 AHAEQAEFPSAERLNYLLEVLNNGSTSEDR-----STNYNEQESSQGLNLPESPFASPIR 565 Query: 499 SSISTV 482 +SISTV Sbjct: 566 NSISTV 571 >ref|XP_002320513.1| predicted protein [Populus trichocarpa] gi|222861286|gb|EEE98828.1| predicted protein [Populus trichocarpa] Length = 554 Score = 614 bits (1583), Expect(2) = 0.0 Identities = 314/519 (60%), Positives = 373/519 (71%), Gaps = 1/519 (0%) Frame = -1 Query: 2271 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 2092 MDF+E+TK VY+RIQ +EP+ V KIIGY+LLQ++GER+MIRLAF PD I + I++AK + Sbjct: 1 MDFSESTKVVYNRIQEIEPEFVGKIIGYILLQNHGEREMIRLAFSPDNLIYATISKAKSD 60 Query: 2091 LGLSPKPGISAPIPPASMNLAPTSDLPLQFTXXXXXXXXXXXXXATLRVAPPYWDPLVMV 1912 LGL+ P + PI P+ +N AP SD+ LQF +R A +WD V Sbjct: 61 LGLNKTP-VPNPISPSQVNPAPVSDVHLQFIPNTAVSSHPISSPIKIRTAGSFWDAQVT- 118 Query: 1911 DQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTLG 1732 DYR NQ QFL+ +DQL+ VN DFSS++FYP+ LG Sbjct: 119 ---------------------DYRLQNQMQFLTSDDQLEFVNS---DFSSSYFYPEPALG 154 Query: 1731 NMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIFSPNSNDLIT 1552 RTSRRSPSLPEFPVK CHYFNKGFCKHG++CRYFHG P+P+SFSQI S NSN++ Sbjct: 155 ---PRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGHPMPESFSQILSLNSNEIAN 211 Query: 1551 DDHFL-PGSXXXXXXXXXXXXKSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHGK 1375 D+HF+ PGS KSRRG PVSIASLP++Y EKYGR LQAEGYLTESQRHGK Sbjct: 212 DEHFISPGSLEKLELELTELLKSRRGVPVSIASLPMMYYEKYGRMLQAEGYLTESQRHGK 271 Query: 1374 AGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYLT 1195 AGYSLTKLLARLKNSIRLIDRPHGQH+V+L ED P+Y+EY +R+DPGG+VAGSRQIYLT Sbjct: 272 AGYSLTKLLARLKNSIRLIDRPHGQHSVILTEDVPKYLEYAGERNDPGGIVAGSRQIYLT 331 Query: 1194 FPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVCG 1015 FPAESTFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK IL+KGNPH VCG Sbjct: 332 FPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILSKGNPHHVCG 391 Query: 1014 ARVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFMED 835 ARVLVKPYREKSRLVDRKY EK P +Y +F+D + E+ PR+CD SRLLRKQ ME+ Sbjct: 392 ARVLVKPYREKSRLVDRKYAEKIQHPFFYSQHFIDGDSELHSVPRVCDNSRLLRKQLMEE 451 Query: 834 HXXXXXXXXXXXXXXXLGHRPLAHQPYFGYSMDDLKVSD 718 H L +PLA Y G+SMD+ K+S+ Sbjct: 452 HEQALELERRRLSEFQLAPKPLARHAYHGHSMDEFKLSE 490 Score = 76.3 bits (186), Expect(2) = 0.0 Identities = 35/60 (58%), Positives = 44/60 (73%) Frame = -3 Query: 658 EFTSRDRFNYLFDVFNNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSISTVI 479 +F S + FNY FDV NNGSTS++K RH+ +N +QG+NLPESPFAS +G ISTVI Sbjct: 495 QFPSAEHFNYWFDVLNNGSTSEEKHRHTRTNCSEQDSNQGVNLPESPFASAIGKGISTVI 554 >emb|CBI28414.3| unnamed protein product [Vitis vinifera] Length = 525 Score = 556 bits (1432), Expect(2) = e-173 Identities = 304/528 (57%), Positives = 356/528 (67%), Gaps = 4/528 (0%) Frame = -1 Query: 2298 PLTPGNQCKMDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQ 2119 PL MDF+E+TK VY+RIQ LEP++VSKIIGYLLLQD+GERDMIR AF D +IQ Sbjct: 5 PLFSWVDTDMDFSESTKVVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRRAFTSDNAIQ 64 Query: 2118 SLITQAKLELGLSPKPGISAPIPPASMNLAPTSDLPLQFTXXXXXXXXXXXXXATLRVAP 1939 LI +AK ELGLS KP +S+PI +P Sbjct: 65 CLINKAKAELGLSSKPAVSSPI------------------------------------SP 88 Query: 1938 PYWDPLVMVDQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSN 1759 P +P SP+ S Q FL++EDQL+ N G +FS + Sbjct: 89 PQVNP---------------SPSMS-----------QIHFLAMEDQLE--NSVGSEFSGS 120 Query: 1758 FFYPDGTLGNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIF 1579 ++Y + L + R SRRSPSLPEFP+K CHYFNKGFCKHG+SCRYFHG P+ +SFSQIF Sbjct: 121 YYYAEQAL---NTRISRRSPSLPEFPLKVCHYFNKGFCKHGNSCRYFHGHPMLESFSQIF 177 Query: 1578 SPNSNDLITDDH-FLPGSXXXXXXXXXXXXKSRRGCPVSIASLPLLYQEKYGRTLQAEGY 1402 SP +N+L DDH F PGS KSRRGCPVSIASLP++Y EKYGRTLQAEGY Sbjct: 178 SPGANELPNDDHVFPPGSLEKLELELTELLKSRRGCPVSIASLPMMYYEKYGRTLQAEGY 237 Query: 1401 LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVV 1222 LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQH+V+LAED P+YME +RSDPG +V Sbjct: 238 LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDLPKYMEVNGERSDPGAIV 297 Query: 1221 AGSRQIYLTFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILT 1042 S+QIYLTFPA+STFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK ILT Sbjct: 298 GSSKQIYLTFPADSTFTEQDVSNYFNKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILT 357 Query: 1041 KGNPHFVCGARVLVKPYREK--SRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDT 868 KGNPH++CGARVLVKPYREK SR VDR+ + P+YY +F+D + E+Q PR+CD Sbjct: 358 KGNPHYICGARVLVKPYREKASSRTVDRRQH-----PMYYSPHFIDEDSELQSIPRVCDN 412 Query: 867 SRLLRK-QFMEDHXXXXXXXXXXXXXXXLGHRPLAHQPYFGYSMDDLK 727 SRLLRK Q ME+H L P PYFGYSMD+ K Sbjct: 413 SRLLRKQQLMEEHEQALELERRRLSELQL--TPKTAHPYFGYSMDEFK 458 Score = 81.3 bits (199), Expect(2) = e-173 Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 1/66 (1%) Frame = -3 Query: 676 AHRDQSEFTSRDRFNYLFDVFNNGSTSDDKGRHSNSNNYSDQE-SQGLNLPESPFASPMG 500 AH +Q+EF S +R NYL +V NNGSTS+D+ S NY++QE SQGLNLPESPFASP+ Sbjct: 464 AHAEQAEFPSAERLNYLLEVLNNGSTSEDR-----STNYNEQESSQGLNLPESPFASPIR 518 Query: 499 SSISTV 482 +SISTV Sbjct: 519 NSISTV 524 >ref|XP_002529054.1| RNA binding protein, putative [Ricinus communis] gi|223531534|gb|EEF33365.1| RNA binding protein, putative [Ricinus communis] Length = 551 Score = 519 bits (1337), Expect(2) = e-157 Identities = 279/519 (53%), Positives = 341/519 (65%), Gaps = 1/519 (0%) Frame = -1 Query: 2271 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 2092 MDF+E T+ V+++I+ +EP++V+KIIGYLLLQD +++MI LA PD+ IQ +I +AK E Sbjct: 1 MDFSEHTRVVFNKIKKIEPENVTKIIGYLLLQDGSDQEMINLAMSPDVVIQDVIYKAKAE 60 Query: 2091 LGLSPKPGISAPIPPASMNLAPT-SDLPLQFTXXXXXXXXXXXXXATLRVAPPYWDPLVM 1915 L + P+ P SMN P S+ QF RV YW+ V Sbjct: 61 LNQLALKSAATPLSP-SMNSPPAVSEFSSQFRAFSPVSSRSYLSPQHFRVPSTYWESQVA 119 Query: 1914 VDQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTL 1735 H+ DF+ Y D++++ NQAQFLSLEDQL++VN F S+ FY D L Sbjct: 120 SK----HSSDFVPMTYQDSMTE---LQNQAQFLSLEDQLESVNLGNAGFPSDLFYSDAAL 172 Query: 1734 GNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSSCRYFHGQPVPDSFSQIFSPNSNDLI 1555 G+ AR RR SL E +K CHYFNKG+CKHGS+CRYFHGQ + DSF + F + D I Sbjct: 173 GSFRARAGRRYSSLNENSMKICHYFNKGYCKHGSNCRYFHGQ-ISDSFPRTFDAINEDQI 231 Query: 1554 TDDHFLPGSXXXXXXXXXXXXKSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHGK 1375 F PGS KSR+G PVSIASLP+LY EKYG+ LQA+GYLTESQRHGK Sbjct: 232 ----FSPGSLEKLELEIIELLKSRKGNPVSIASLPMLYYEKYGKVLQADGYLTESQRHGK 287 Query: 1374 AGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYLT 1195 AGYSLTKLLARLKNSIRLIDRPHGQHAV+LAED P+YME R DR+DPG +V+GSRQIYLT Sbjct: 288 AGYSLTKLLARLKNSIRLIDRPHGQHAVILAEDVPKYMENRGDRNDPGPIVSGSRQIYLT 347 Query: 1194 FPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVCG 1015 FPAESTFTE+DVSNYF FGPV+DVRIPCQQKRMFGFVTF +TVKIIL KGNPHFVC Sbjct: 348 FPAESTFTEDDVSNYFNKFGPVEDVRIPCQQKRMFGFVTFESADTVKIILAKGNPHFVCN 407 Query: 1014 ARVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFMED 835 ARVLVKPYRE L+ Y+ S+++DM+ E+ R +TSRLLRKQ +E+ Sbjct: 408 ARVLVKPYRENQSLL-----------XYFSSHYVDMDAELHSMSRGYETSRLLRKQLLEE 456 Query: 834 HXXXXXXXXXXXXXXXLGHRPLAHQPYFGYSMDDLKVSD 718 +P++H YF Y MD KVS+ Sbjct: 457 QEQALELERRQRLAELRIRKPVSHHSYFDYPMDGFKVSE 495 Score = 64.3 bits (155), Expect(2) = e-157 Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 2/59 (3%) Frame = -3 Query: 649 SRDRFNYLFDV--FNNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSISTVI 479 S D F + V F NGS +DDK RH +N Y+DQ+SQGLNLPESPFAS + SSIST+I Sbjct: 494 SEDNFELPYHVLDFINGSGNDDKIRHIETN-YADQDSQGLNLPESPFASAIPSSISTII 551