BLASTX nr result
ID: Coptis25_contig00007718
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00007718 (269 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa] 181 7e-44 pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting ... 181 7e-44 gb|AFK40061.1| unknown [Medicago truncatula] 181 7e-44 gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisu... 181 7e-44 gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-bind... 181 7e-44 >gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa] Length = 266 Score = 181 bits (458), Expect = 7e-44 Identities = 89/89 (100%), Positives = 89/89 (100%) Frame = +2 Query: 2 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 181 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD Sbjct: 137 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 196 Query: 182 PLGLADDPEAFAELKVKELKNGRLAMFSM 268 PLGLADDPEAFAELKVKELKNGRLAMFSM Sbjct: 197 PLGLADDPEAFAELKVKELKNGRLAMFSM 225 >pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Score = 181 bits (458), Expect = 7e-44 Identities = 89/89 (100%), Positives = 89/89 (100%) Frame = +2 Query: 2 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 181 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD Sbjct: 103 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 162 Query: 182 PLGLADDPEAFAELKVKELKNGRLAMFSM 268 PLGLADDPEAFAELKVKELKNGRLAMFSM Sbjct: 163 PLGLADDPEAFAELKVKELKNGRLAMFSM 191 >gb|AFK40061.1| unknown [Medicago truncatula] Length = 266 Score = 181 bits (458), Expect = 7e-44 Identities = 89/89 (100%), Positives = 89/89 (100%) Frame = +2 Query: 2 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 181 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD Sbjct: 137 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 196 Query: 182 PLGLADDPEAFAELKVKELKNGRLAMFSM 268 PLGLADDPEAFAELKVKELKNGRLAMFSM Sbjct: 197 PLGLADDPEAFAELKVKELKNGRLAMFSM 225 >gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum] Length = 266 Score = 181 bits (458), Expect = 7e-44 Identities = 89/89 (100%), Positives = 89/89 (100%) Frame = +2 Query: 2 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 181 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD Sbjct: 137 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 196 Query: 182 PLGLADDPEAFAELKVKELKNGRLAMFSM 268 PLGLADDPEAFAELKVKELKNGRLAMFSM Sbjct: 197 PLGLADDPEAFAELKVKELKNGRLAMFSM 225 >gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein [Artemisia annua] Length = 254 Score = 181 bits (458), Expect = 7e-44 Identities = 89/89 (100%), Positives = 89/89 (100%) Frame = +2 Query: 2 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 181 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD Sbjct: 125 QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 184 Query: 182 PLGLADDPEAFAELKVKELKNGRLAMFSM 268 PLGLADDPEAFAELKVKELKNGRLAMFSM Sbjct: 185 PLGLADDPEAFAELKVKELKNGRLAMFSM 213