BLASTX nr result
ID: Coptis25_contig00007710
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00007710 (2831 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH... 581 e-163 ref|XP_002329202.1| chromatin remodeling complex subunit [Populu... 572 e-160 ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin... 531 e-148 ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH... 531 e-148 ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 d... 530 e-148 >ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera] Length = 1704 Score = 581 bits (1497), Expect = e-163 Identities = 314/606 (51%), Positives = 391/606 (64%), Gaps = 8/606 (1%) Frame = +3 Query: 1038 MARKKQARPYRSGGLMESVDS---VKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRS 1208 M R+KQ +P+RS G++E +++ +G N + T FVE+DR+ Sbjct: 1 MGRRKQPKPHRSVGVVERLETQETAEGELNSQQE-----HAQGDEVGDAETPLFVEVDRT 55 Query: 1209 SWTSDGHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNVEDYSERIKLGHW 1388 W S HLDI+E+++ D+ R + Y L E Y +SK RFRL N + RI+LGHW Sbjct: 56 GWGSGEHLDISEIVLNDLNLREEFHGYSLGEGFYENSKCCLRFRLCNANQFVGRIRLGHW 115 Query: 1389 PKVETDHIFLEFIDTSKMEDS-EKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXXX 1565 P V I LEF++ E+ E D V+ SG FDGPD+GVSGL HL Sbjct: 116 PVVAASSISLEFVEKRVSEEGIETDSVILSGIFDGPDEGVSGLVHLSRLKLLTLRPVLGV 175 Query: 1566 XXXXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGIDR 1745 + +RVEILR+AFDAC+SLLD +R WK+SM+SVMAWLRPEVTT E YG+ + Sbjct: 176 TFSEGVSFVRLRVEILRTAFDACESLLDNSRPLWKKSMMSVMAWLRPEVTTSEARYGVAK 235 Query: 1746 SNFVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAXXXXXXXXXXXXXXXXYQRR 1925 S +D+DS M D ++S++ F+AA FY+AIKP K+ YQRR Sbjct: 236 SKEMDIDSNMGMDVGDLDSKKHQNFDAAGFYEAIKPSKEDPLLDYDMPDLLPELRPYQRR 295 Query: 1926 AAYWMVERE---KGTSLKSSERDQNQFLRPLCVPVNFLYTELLMFYNPFSGSISLHQESI 2096 AAYWMV+RE +G SL S PLC+PV+F+ + MFYNPFSG++SL E Sbjct: 296 AAYWMVQREIKGEGGSLFS----------PLCMPVDFVDSFERMFYNPFSGNVSLRPEYS 345 Query: 2097 SSYVSGGVLADEMGLGKTVELLACIFAHRKSMSEGTTASEVLTQAAEGQKSNLKRLKIER 2276 S V GG+LADEMGLGKTVELLACIFAHRK SE QAA+GQK NLKRLK + Sbjct: 346 SLNVYGGILADEMGLGKTVELLACIFAHRKPASESGILLNNALQAAQGQKINLKRLKRDH 405 Query: 2277 VECKCGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKFSSSPKVSKEGGCKKVQSGN 2456 VEC CGA++ES +YKGLWVQCD+CDAWQHADCVGYSP K + S + S KK N Sbjct: 406 VECICGAVSESPRYKGLWVQCDVCDAWQHADCVGYSPTAKTTKSKENSNGQVFKKNPLEN 465 Query: 2457 CWK-SSKRKASNIVEMEGYYTCQLCSELIQVSHSPVHTGATLIVCPSPILHQWHAEILRH 2633 K + K+ +NIV M+G + CQLC ELIQ + SP TGATLIVCP+PIL QWHAEI+RH Sbjct: 466 SKKQTGKKNKTNIVLMDGEHICQLCLELIQATDSPAATGATLIVCPAPILPQWHAEIIRH 525 Query: 2634 TRPGSLKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDVLREDLSHDSDRNEGDRRF 2813 T PGSLK VYEG+R+ SLS ++DIS+ +SADIVLTTYDVL+EDLSHDSDR+EGDRR Sbjct: 526 TNPGSLKLCVYEGVRNTSLSNAYAMDISKLISADIVLTTYDVLKEDLSHDSDRHEGDRRI 585 Query: 2814 MRFDKR 2831 MRF KR Sbjct: 586 MRFQKR 591 >ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222870983|gb|EEF08114.1| chromatin remodeling complex subunit [Populus trichocarpa] Length = 1320 Score = 572 bits (1475), Expect = e-160 Identities = 302/603 (50%), Positives = 386/603 (64%), Gaps = 5/603 (0%) Frame = +3 Query: 1038 MARKKQARPYRSGGLM---ESVDSVKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRS 1208 M R+KQARP+RSGGL+ + S K FVE++R+ Sbjct: 1 MGRRKQARPHRSGGLIIQNNAAASASAELKNQRKASSSDAQPTELVGIDEQPYFVEVERN 60 Query: 1209 SWTSDGHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNV-EDYSERIKLGH 1385 SW S+ H D +E+++ + R + S+ +T+ Y DSKYS RFR+ NV + RIKLGH Sbjct: 61 SWASNHHRDASELVLHGLNLRQEYSSFRVTDGFYHDSKYSLRFRVSNVKQSVLSRIKLGH 120 Query: 1386 WPKVETDHIFLEFIDTSKME-DSEKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXX 1562 WP + I LE I+ S +E D E + V+FSG+FDGPD+G++GL HL + Sbjct: 121 WPVFSSSDISLELIEKSMVEEDREVESVIFSGSFDGPDEGITGLVHLTNMEFLTLRPVLG 180 Query: 1563 XXXXXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGID 1742 L MRVEIL AFDAC+SLL+ TRQ WK+SM++VMAWLRPEV T E Y Sbjct: 181 VDFSEKMTPLRMRVEILEKAFDACESLLESTRQIWKKSMMNVMAWLRPEVMTSEARYRHA 240 Query: 1743 RSNFVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAXXXXXXXXXXXXXXXXYQR 1922 +S ++++ + DD S ++ +F+ A Y+AIKP K YQR Sbjct: 241 KSTEMEVNMAAEIGDDTSNSGKRAQFDVAGLYEAIKPSKSDPMLEDDLPDLLPTLRPYQR 300 Query: 1923 RAAYWMVEREKGTSLKSSERDQNQFLRPLCVPVNFLYTELLMFYNPFSGSISLHQESISS 2102 RAA+WMV++EKG S SS ++++QF PLC+PV+FL T MFYNPFSG++S H E Sbjct: 301 RAAHWMVQQEKGES--SSVKERSQFFSPLCMPVDFLDTCSKMFYNPFSGNVSFHPEFSPP 358 Query: 2103 YVSGGVLADEMGLGKTVELLACIFAHRKSMSEGTTASEVLTQAAEGQKSNLKRLKIERVE 2282 YVSGG+LADEMGLGKTVELLACI AHRKS S+ + Q QK NLKRLK ERVE Sbjct: 359 YVSGGILADEMGLGKTVELLACILAHRKSTSDDGSVVAPTWQNTGNQKINLKRLKRERVE 418 Query: 2283 CKCGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKFSSSPKVSKEGGCKKVQSGNCW 2462 C CGA+++S+KY+GLWVQCDICDAWQHADCVGYSP G KK+ + Sbjct: 419 CVCGAVSDSYKYRGLWVQCDICDAWQHADCVGYSPR-------------GKKKMSVDDEQ 465 Query: 2463 KSSKRKASNIVEMEGYYTCQLCSELIQVSHSPVHTGATLIVCPSPILHQWHAEILRHTRP 2642 K + + VE +G + CQ+CSELI+V+ +P+ TGATLIVCP+PIL QWH+EI RHTRP Sbjct: 466 KHRNKTTISYVERDGEHVCQMCSELIEVADTPIATGATLIVCPAPILPQWHSEITRHTRP 525 Query: 2643 GSLKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDVLREDLSHDSDRNEGDRRFMRF 2822 GSLKT+VYEG+R SLS T VDI + V+ADIVLTTYDVL+EDL HDSDR+ GDR +RF Sbjct: 526 GSLKTYVYEGVRDTSLSNTFVVDIGQLVNADIVLTTYDVLKEDLLHDSDRHGGDRHILRF 585 Query: 2823 DKR 2831 KR Sbjct: 586 QKR 588 >ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] Length = 1520 Score = 531 bits (1369), Expect = e-148 Identities = 283/601 (47%), Positives = 372/601 (61%), Gaps = 3/601 (0%) Frame = +3 Query: 1038 MARKKQARPYRSGGL-MESVDSVKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRSSW 1214 M R+KQ +P RSGG+ E K + + + FVE+DRS W Sbjct: 1 MGRRKQKQPNRSGGIRFEDRGDHKTQLDINEVVETAVESSDIKLDGVNEPIFVEVDRSGW 60 Query: 1215 TSDGHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNVE-DYSERIKLGHWP 1391 S+ H DI+EV + D+R + + L + V +S+YS RFRL NV +RIK GHWP Sbjct: 61 YSNEHYDISEVFLADVRLEHPFVGFCLDKSVRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120 Query: 1392 KVETDHIFLEFIDTSKMEDSEKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXXXXX 1571 + ++ FLEFI+ ED + VV SGN DGPD+ +SGL HL + Sbjct: 121 VLSSNDTFLEFIERDMEEDVKACSVVLSGNLDGPDEAISGLVHLANLKLMTLRPVDGVXF 180 Query: 1572 XXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGIDRSN 1751 + L +RVEIL SAFDAC+S+ D RQ WK+SM++ + WLRPEV E YG+ +S+ Sbjct: 181 SQNMGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTITWLRPEVVLSEVKYGVVKSS 240 Query: 1752 FVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAXXXXXXXXXXXXXXXXYQRRAA 1931 +D + DD SR+ F+ FYDAIKP KD YQRRAA Sbjct: 241 NMDTHLHHEAGDDTSNSRKHANFDTIGFYDAIKPSKDEPMLDEDIPNLLPKLRPYQRRAA 300 Query: 1932 YWMVEREKGTSLKSSERDQNQFLRPLCVPVNFLYTELLMFYNPFSGSISLHQESISSYVS 2111 YWM++REKG S S + Q + PLC+ + L T L +FYNPFSG+++L+ E + +V Sbjct: 301 YWMIQREKGFSGNSGLGENVQLISPLCMALKCLDTCLRVFYNPFSGNLTLNAEQVLPHVY 360 Query: 2112 GGVLADEMGLGKTVELLACIFAHRKSMSEGTTASEV-LTQAAEGQKSNLKRLKIERVECK 2288 GG+LADEMGLGKT+ELLACI +H+ S+ EG +V + Q E Q++ KRLK ER+EC Sbjct: 361 GGILADEMGLGKTIELLACILSHQMSVFEGRKGFDVEVQQLVEDQRTEFKRLKRERIECL 420 Query: 2289 CGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKFSSSPKVSKEGGCKKVQSGNCWKS 2468 CGA++E+++YKGLWVQCDICDAWQHADCVGYSP + S V E G + + K Sbjct: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKS--VDTEDGNSRRE-----KR 473 Query: 2469 SKRKASNIVEMEGYYTCQLCSELIQVSHSPVHTGATLIVCPSPILHQWHAEILRHTRPGS 2648 + R N++ + C C EL+Q + SP+ TGATLIVCP+PIL QW AEILRHT PGS Sbjct: 474 NNRNTLNVIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRHTHPGS 533 Query: 2649 LKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDVLREDLSHDSDRNEGDRRFMRFDK 2828 +K VYEG+R SL T S I++ +++DIVLT+YDVL+EDLSHDSDR+EGDRRFMRF K Sbjct: 534 MKLLVYEGVRDTSLLGTLSAQINDLINSDIVLTSYDVLKEDLSHDSDRHEGDRRFMRFQK 593 Query: 2829 R 2831 R Sbjct: 594 R 594 >ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] Length = 1520 Score = 531 bits (1369), Expect = e-148 Identities = 282/601 (46%), Positives = 371/601 (61%), Gaps = 3/601 (0%) Frame = +3 Query: 1038 MARKKQARPYRSGGL-MESVDSVKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRSSW 1214 M R+KQ +P RSGG+ E K + + + FVE+DRS W Sbjct: 1 MGRRKQKQPNRSGGIRFEDRGDHKTQLDINEVVETAVESSDIKLDGVNEPIFVEVDRSGW 60 Query: 1215 TSDGHLDIAEVIVTDIRPRGKLLSYGLTEDVYMDSKYSFRFRLRNVE-DYSERIKLGHWP 1391 S+ H DI+EV + D+R + + L + V +S+YS RFRL NV +RIK GHWP Sbjct: 61 YSNEHYDISEVFLADVRLEHPFVGFCLDKSVRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120 Query: 1392 KVETDHIFLEFIDTSKMEDSEKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXXXXX 1571 + ++ FLEFI+ ED + VV SGN DGPD+ +SGL HL + Sbjct: 121 VLSSNDTFLEFIERDMEEDVKACSVVLSGNLDGPDEAISGLVHLANLKLMTLRPVDGVPF 180 Query: 1572 XXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGIDRSN 1751 + L +RVEIL SAFDAC+S+ D RQ WK+SM++ + WLRPEV E YG+ +S+ Sbjct: 181 SQNMGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTITWLRPEVVLSEVKYGVVKSS 240 Query: 1752 FVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAXXXXXXXXXXXXXXXXYQRRAA 1931 +D + DD SR+ F+ FYDAIKP KD YQRRAA Sbjct: 241 NMDTHLHHEAGDDTSNSRKHANFDTIGFYDAIKPSKDEPMLDEDIPNLLPKLRPYQRRAA 300 Query: 1932 YWMVEREKGTSLKSSERDQNQFLRPLCVPVNFLYTELLMFYNPFSGSISLHQESISSYVS 2111 YWM++REKG S S + Q + PLC+ + L T L +FYNPFSG+++L+ E + +V Sbjct: 301 YWMIQREKGFSGNSGLGENVQLISPLCMALKCLDTCLRVFYNPFSGNLTLNAEQVLPHVY 360 Query: 2112 GGVLADEMGLGKTVELLACIFAHRKSMSEGTTASEV-LTQAAEGQKSNLKRLKIERVECK 2288 GG+LADEMGLGKT+ELLACI +H+ S+ EG +V + Q E Q++ KRLK ER+EC Sbjct: 361 GGILADEMGLGKTIELLACILSHQMSVFEGRKGFDVEVQQLVEDQRTEFKRLKRERIECL 420 Query: 2289 CGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKFSSSPKVSKEGGCKKVQSGNCWKS 2468 CGA++E+++YKGLWVQCDICDAWQHADCVGYSP + S V E G + + K Sbjct: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKS--VDTEDGNSRRE-----KR 473 Query: 2469 SKRKASNIVEMEGYYTCQLCSELIQVSHSPVHTGATLIVCPSPILHQWHAEILRHTRPGS 2648 + R N++ + C C EL+Q + SP+ TGATLIVCP+PIL QW AEILRHT PGS Sbjct: 474 NNRNTLNVIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRHTHPGS 533 Query: 2649 LKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDVLREDLSHDSDRNEGDRRFMRFDK 2828 +K VYEG+R SL T S I++ +++DIVLT+YDVL+EDLSHDSDR+EGDRRFMRF K Sbjct: 534 MKLLVYEGVRDTSLLGTLSAQINDLINSDIVLTSYDVLKEDLSHDSDRHEGDRRFMRFQK 593 Query: 2829 R 2831 R Sbjct: 594 R 594 >ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] Length = 1664 Score = 530 bits (1366), Expect = e-148 Identities = 292/609 (47%), Positives = 386/609 (63%), Gaps = 11/609 (1%) Frame = +3 Query: 1038 MARKKQARPYRSGGLMESVDSVKGNSNKSAKCDDXXXXXXXXXXXXXTSRFVEIDRSSWT 1217 M R+KQ++P R+ GL+ S + D+ +V I SS Sbjct: 1 MGRRKQSKPQRAVGLITPTGSESDRNQLPG--DEAEGSGDKNVEDIDKPYYVNICLSSRV 58 Query: 1218 SDG--HLDIAEVIVTDIRPR---GKLLSYGLTEDVYMDSKYSFRFRLRNVEDYSERIKLG 1382 S+ + D+AEV++T+ R G ++ +V D S RFRL NV ++ +RIKLG Sbjct: 59 SEQQQNFDLAEVVLTNFSVRERVGSSSTFTKPIEVDHDLDCSLRFRLCNVTNFVDRIKLG 118 Query: 1383 HWPKVETDHIFLEFIDTSKMEDSEKDDVVFSGNFDGPDDGVSGLAHLVSQXXXXXXXXXX 1562 HWP + + I LE +D +K+ D E V++S +FDGP +GVSGLAHL S Sbjct: 119 HWPVLSSSDITLELVD-NKVSDDEVGSVIWSASFDGPGEGVSGLAHLAS---IKFLTLRL 174 Query: 1563 XXXXXDALILTMRVEILRSAFDACDSLLDVTRQPWKRSMVSVMAWLRPEVTTQEGIYGID 1742 L +RVE+L+ AFDACDSLL+ TRQ WK+SM+ VM+WLRPEV T E YG Sbjct: 175 MPGNEGLLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGT- 233 Query: 1743 RSNFVDLDSQMDTDDDHIESRRKMRFNAADFYDAIKPPKDAXXXXXXXXXXXXXXXXYQR 1922 R N D++S + T+D+ ++S ++ F+AA FY+AIKP K YQR Sbjct: 234 RFNVKDIESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAMLGDDIADLLPELRPYQR 293 Query: 1923 RAAYWMVEREKGTSLKSSERDQNQFLRPLCVPVNFLYTELLMFYNPFSGSISLHQESISS 2102 RAAYWMV+RE+G + +++ NQF+ PL + V FL + MF NPFSG+ISL E S Sbjct: 294 RAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYFSP 353 Query: 2103 YVSGGVLADEMGLGKTVELLACIFAHRK------SMSEGTTASEVLTQAAEGQKSNLKRL 2264 + GG+LADEMGLGKTVELLACIF+HRK S+S G++ ++VL + L+RL Sbjct: 354 RIQGGILADEMGLGKTVELLACIFSHRKPAEDEISVSNGSSVTDVLN-------AGLRRL 406 Query: 2265 KIERVECKCGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKFSSSPKVSKEGGCKKV 2444 K ERVEC CGA++ESHKYKG+WVQCD+CDAWQHADCVGYSP K + E +K Sbjct: 407 KRERVECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQK- 465 Query: 2445 QSGNCWKSSKRKASNIVEMEGYYTCQLCSELIQVSHSPVHTGATLIVCPSPILHQWHAEI 2624 SK+ A+ I+ EG Y CQ+CSEL+QV+ SP+ TGATLIVCP+PIL QWH+EI Sbjct: 466 -------KSKKDATEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEI 518 Query: 2625 LRHTRPGSLKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDVLREDLSHDSDRNEGD 2804 RHTR GSL T +YEG+R+ASLS P +DI+E ++ADIVLTTYDVL+EDL+HD DR++GD Sbjct: 519 TRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGD 578 Query: 2805 RRFMRFDKR 2831 R +RF KR Sbjct: 579 RHCLRFQKR 587