BLASTX nr result
ID: Coptis25_contig00007699
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00007699
(1161 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat... 498 e-138
ref|XP_002309575.1| predicted protein [Populus trichocarpa] gi|2... 494 e-137
ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat... 461 e-127
ref|NP_188131.1| pentatricopeptide repeat-containing protein [Ar... 425 e-116
ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arab... 424 e-116
>ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130 [Vitis vinifera] gi|296083673|emb|CBI23662.3|
unnamed protein product [Vitis vinifera]
Length = 685
Score = 498 bits (1281), Expect = e-138
Identities = 231/330 (70%), Positives = 281/330 (85%), Gaps = 1/330 (0%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENIDPDGVTYLA 181
KCGLTEEAE F E+ NV+SWTVMITGYGKHG G++AI+ F++M+L+ I+ D V YLA
Sbjct: 356 KCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLA 415
Query: 182 VLSACSHAGLMKEGNKYFSRLCGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIESIPLE 361
+LSACSH+GL++E +YFSRLC +H++K IEHYACMVD+LGRAG+L+EAKNLIE++ L+
Sbjct: 416 LLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLK 475
Query: 362 PNPGIWQTLLGACRVHRDLKLGREVGEILLNLDGENPVNYVMLSNIYAEAGEWKEYERVR 541
PN GIWQTLL ACRVH +L++GREVGEIL +D +NPVNYVM+SNIYAEAG WKE ERVR
Sbjct: 476 PNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVR 535
Query: 542 EVMKCKGLKKEAGCSWIEIDKAVHYFYGGDDTHPLTERIHXXXXXXXXXXXXQTGYMYRV 721
+++K KGLKKEAG SW+EI+K +H+FYGGDDTHPLTE+IH + GY Y +
Sbjct: 536 KLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGL 595
Query: 722 TFALHDVEEESKEDNLRVHSEKLAIGLGLVCGGLE-KGGIMRIFKNLRVCGDCHEFIKEL 898
FALHDVEEESKE+NLRVHSEKLAIGL LVC G+E KGG++R+FKNLRVCGDCHEFIK L
Sbjct: 596 RFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGL 655
Query: 899 SKVVKKVFVVRDANRFHRFENGVCTCGDYW 988
SK++KKVFVVRDANRFHRFE+G+C+CGDYW
Sbjct: 656 SKILKKVFVVRDANRFHRFEDGLCSCGDYW 685
Score = 65.1 bits (157), Expect = 3e-08
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENIDPDGVTYLA 181
KCG AE F ++ N++SW MI G+ G+G++++ F +M+ + PD T+ +
Sbjct: 152 KCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTS 211
Query: 182 VLSACSHAGLMKEGNK-YFSRLCGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIESIPL 358
L AC G ++ G + + S + + + + +VDL + G L EA+ + + I
Sbjct: 212 TLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIE- 270
Query: 359 EPNPGIWQTLLGACRVHRDL----KLGREVGEILLNLDG 463
+ N W L+ +L L R++ E + N+DG
Sbjct: 271 QKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDG 309
>ref|XP_002309575.1| predicted protein [Populus trichocarpa] gi|222855551|gb|EEE93098.1|
predicted protein [Populus trichocarpa]
Length = 653
Score = 494 bits (1273), Expect = e-137
Identities = 233/330 (70%), Positives = 276/330 (83%), Gaps = 1/330 (0%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENIDPDGVTYLA 181
KCG+ EAE F E+ NVISWTVMITGYGKHG GK+AI FD+M+L++ +PD VTYLA
Sbjct: 324 KCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLA 383
Query: 182 VLSACSHAGLMKEGNKYFSRLCGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIESIPLE 361
VL CSH+GL+++G +YFSRLC H +KA++EHYACMVDLLGRAGRL+EAKNL++S+PLE
Sbjct: 384 VLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLE 443
Query: 362 PNPGIWQTLLGACRVHRDLKLGREVGEILLNLDGENPVNYVMLSNIYAEAGEWKEYERVR 541
N GIWQTLL ACRVH DL+LG+EVG ILL LD ENPVNYVM+SNIYA+AG WKE ER+R
Sbjct: 444 ANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIR 503
Query: 542 EVMKCKGLKKEAGCSWIEIDKAVHYFYGGDDTHPLTERIHXXXXXXXXXXXXQTGYMYRV 721
E++K K LKKEAG SW+EIDK VH+FYGGDDTHPLTE+IH + GY+Y V
Sbjct: 504 ELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGV 563
Query: 722 TFALHDVEEESKEDNLRVHSEKLAIGLGLVCGGLEKG-GIMRIFKNLRVCGDCHEFIKEL 898
+ALHDVEEESK DNLRVHSEKLAIGL LVCGGLE+G ++R+FKNLRVCGDCHEFIK L
Sbjct: 564 KYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGL 623
Query: 899 SKVVKKVFVVRDANRFHRFENGVCTCGDYW 988
SK+++ VFVVRDANRFHRFE+G+C+C DYW
Sbjct: 624 SKILRVVFVVRDANRFHRFEDGLCSCRDYW 653
Score = 61.6 bits (148), Expect = 4e-07
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENIDPDGVTYLA 181
KCG EA F + N+ISW MI GY G ++A+ F +M+ D T+ +
Sbjct: 120 KCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTS 179
Query: 182 VLSACSHAGLMKEGNKYFSRL-CGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIESIPL 358
L ACS G +KEGN+ + L G ++DL + G+L A+ + I
Sbjct: 180 TLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIE- 238
Query: 359 EPNPGIWQTL-LGACR---VHRDLKLGREVGEILLNLDG 463
E + W L LG + + ++L R++ E + +DG
Sbjct: 239 EKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDG 277
>ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Glycine max]
Length = 586
Score = 461 bits (1187), Expect = e-127
Identities = 217/331 (65%), Positives = 264/331 (79%), Gaps = 2/331 (0%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENIDPDGVTYLA 181
KCGLT EA++ FRE+ + NV+SWTVMITGYGKHG G +A+ F++M+ I+PD VTYLA
Sbjct: 256 KCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLA 315
Query: 182 VLSACSHAGLMKEGNKYFSRLCGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIESIPLE 361
VLSACSH+GL+KEG KYFS LC + K+K K+EHYACMVDLLGR GRL+EAKNLIE +PL+
Sbjct: 316 VLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLK 375
Query: 362 PNPGIWQTLLGACRVHRDLKLGREVGEILLNLDGENPVNYVMLSNIYAEAGEWKEYERVR 541
PN GIWQTLL CR+H D+++G++VGEILL +G NP NYVM+SN+YA AG WKE E++R
Sbjct: 376 PNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIR 435
Query: 542 EVMKCKGLKKEAGCSWIEIDKAVHYFYGGDDTHPLTERIHXXXXXXXXXXXXQTGYMYRV 721
E +K KGLKKEAG SW+E+DK +H FY GD HPL E IH + GY++ +
Sbjct: 436 ETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEMGYVHSI 495
Query: 722 TFALHDVEEESKEDNLRVHSEKLAIGLGLVCGGLEKGG--IMRIFKNLRVCGDCHEFIKE 895
F+LHDVEEESK ++LRVHSEKLAIGL LV GL+ G ++RIFKNLRVCGDCH FIK
Sbjct: 496 NFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKG 555
Query: 896 LSKVVKKVFVVRDANRFHRFENGVCTCGDYW 988
LSKV+K FVVRDANRFHRFENG+C+CGDYW
Sbjct: 556 LSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586
Score = 71.6 bits (174), Expect = 3e-10
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 5/159 (3%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENIDPDGVTYLA 181
KCG+ EA F + NVISW MI GY +G++A+ F +M+ + PDG TY +
Sbjct: 51 KCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSS 110
Query: 182 VLSACSHAGLMKEGNKYFSRLC-GDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIESIPL 358
L ACS A EG + + L A+ +VDL + R+ EA+ + + I
Sbjct: 111 SLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIE- 169
Query: 359 EPNPGIWQTLLGACRVHRDLK----LGREVGEILLNLDG 463
E + W TL+ +LK L RE+ E +DG
Sbjct: 170 EKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDG 208
>ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546753|sp|P0C898.1|PP232_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing protein
At3g15130 gi|332642102|gb|AEE75623.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 425 bits (1092), Expect = e-116
Identities = 197/330 (59%), Positives = 252/330 (76%), Gaps = 1/330 (0%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENIDPDGVTYLA 181
KCGL +EAE CF E+ +VISWTV+ITGYGKHG GK+++ F +M NI+PD V YLA
Sbjct: 360 KCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLA 419
Query: 182 VLSACSHAGLMKEGNKYFSRLCGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIESIPLE 361
VLSACSH+G++KEG + FS+L H +K ++EHYAC+VDLLGRAGRL+EAK+LI+++P++
Sbjct: 420 VLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIK 479
Query: 362 PNPGIWQTLLGACRVHRDLKLGREVGEILLNLDGENPVNYVMLSNIYAEAGEWKEYERVR 541
PN GIWQTLL CRVH D++LG+EVG+ILL +D +NP NYVM+SN+Y +AG W E R
Sbjct: 480 PNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNAR 539
Query: 542 EVMKCKGLKKEAGCSWIEIDKAVHYFYGGDDTHPLTERIHXXXXXXXXXXXXQTGYMYRV 721
E+ KGLKKEAG SW+EI++ VH+F G+D+HPLT I + GY+Y +
Sbjct: 540 ELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGL 599
Query: 722 TFALHDVEEESKEDNLRVHSEKLAIGLGLVCGGL-EKGGIMRIFKNLRVCGDCHEFIKEL 898
LHD+++ESKE+NLR HSEKLAIGL L GGL +KG +R+FKNLRVC DCHEFIK L
Sbjct: 600 KHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGL 659
Query: 899 SKVVKKVFVVRDANRFHRFENGVCTCGDYW 988
SK+ K +VVRDA RFH FE+G C+CGDYW
Sbjct: 660 SKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689
Score = 60.8 bits (146), Expect = 6e-07
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENID--PDGVTY 175
KCG EAE FR I ++ISW MI G+ G+G +A+ F M+ NI PD T
Sbjct: 154 KCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTL 213
Query: 176 LAVLSACSHAGLMKEGNKYFSRL--CGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIES 349
++L ACS G++ G + L G H + +VDL + G L A+ +
Sbjct: 214 TSLLKACSSTGMIYAGKQIHGFLVRSGFH-CPSSATITGSLVDLYVKCGYLFSARKAFDQ 272
Query: 350 IPLEPNPGIWQTLL 391
I E W +L+
Sbjct: 273 IK-EKTMISWSSLI 285
>ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata] gi|297330912|gb|EFH61331.1| hypothetical protein
ARALYDRAFT_318289 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 424 bits (1089), Expect = e-116
Identities = 200/349 (57%), Positives = 261/349 (74%), Gaps = 1/349 (0%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENIDPDGVTYLA 181
KCGL +EAE CF E+ +VISWTVMITGYGKHG GK+A+ F++M NI+PD V YLA
Sbjct: 723 KCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLA 782
Query: 182 VLSACSHAGLMKEGNKYFSRLCGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIESIPLE 361
VLSACSH+G++KEG + FS+L +K ++EHYAC+VDLLGRAGRL+EAK+L++++P++
Sbjct: 783 VLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIK 842
Query: 362 PNPGIWQTLLGACRVHRDLKLGREVGEILLNLDGENPVNYVMLSNIYAEAGEWKEYERVR 541
PN GIWQTLL CRVH D++LG+EVG+ILL +DG+NP NYVM+SN+Y +AG W E R
Sbjct: 843 PNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNAR 902
Query: 542 EVMKCKGLKKEAGCSWIEIDKAVHYFYGGDDTHPLTERIHXXXXXXXXXXXXQTGYMYRV 721
E+ KGL+KEAG SW+EI++ VH+F G+D+HPLT I + GY+Y +
Sbjct: 903 ELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYGL 962
Query: 722 TFALHDVEEESKEDNLRVHSEKLAIGLGLVCGGL-EKGGIMRIFKNLRVCGDCHEFIKEL 898
LHD+++ESKE+NLR HSEKLAIGL L GGL +KG +R+FKNLRVC DCHEFIK L
Sbjct: 963 KHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGL 1022
Query: 899 SKVVKKVFVVRDANRFHRFENGVCTCGDYW*SFCFCICFNIEKKLLVLF 1045
SK+ K +VVRDA RFH FE+G C+CGDY C + ++K+ V+F
Sbjct: 1023 SKITKIAYVVRDAVRFHSFEDGCCSCGDY------CFFIDEQEKVAVVF 1065
Score = 58.5 bits (140), Expect = 3e-06
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Frame = +2
Query: 2 KCGLTEEAESCFREISKPNVISWTVMITGYGKHGHGKQAIYFFDQMKLENID--PDGVTY 175
KCG EAE FR + ++ISW MI GY G+G +A+ F M+ I PD T
Sbjct: 517 KCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTL 576
Query: 176 LAVLSACSHAGLMKEGNKYFSRL--CGDHKVKAKIEHYACMVDLLGRAGRLEEAKNLIES 349
++L ACS G++ G + L G H + +VDL + G L A+ +
Sbjct: 577 TSLLKACSSTGMIYAGKQIHGFLVRSGFH-CPSSATITGSLVDLYVKCGNLFSARKAFDQ 635
Query: 350 IPLEPNPGIWQTLL 391
I E W +L+
Sbjct: 636 IK-EKTMISWSSLI 648