BLASTX nr result
ID: Coptis25_contig00007697
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00007697
(868 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003549540.1| PREDICTED: signal recognition particle recep... 161 4e-52
ref|XP_004167396.1| PREDICTED: signal recognition particle recep... 161 3e-49
ref|XP_003610309.1| Signal recognition particle receptor subunit... 160 7e-49
ref|XP_004144723.1| PREDICTED: signal recognition particle recep... 185 1e-44
ref|XP_002278056.1| PREDICTED: signal recognition particle recep... 181 1e-43
>ref|XP_003549540.1| PREDICTED: signal recognition particle receptor subunit alpha-like
[Glycine max]
Length = 626
Score = 161 bits (407), Expect(3) = 4e-52
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = -2
Query: 285 KALKDRLMTKNVAEEIAEKLCESVAASLEGKNLGSFTRISSTIQTAMEEALVHILTPKRS 106
KALKDRLMTKNVAEEIAEKLCESVAASLEGK L SFTRISST+ TAMEEALV ILTP+RS
Sbjct: 345 KALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHTAMEEALVRILTPRRS 404
Query: 105 IDILRDVHFSKEQGKPYVIVFIGVNVVGKSTNLAK 1
IDILRDVH +KEQ KPYV+VF+GVN VGKSTNLAK
Sbjct: 405 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 439
Score = 60.1 bits (144), Expect(3) = 4e-52
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = -3
Query: 371 AKKKGWFSSMFQSIAWKANLEKSDLESALKLLK 273
AKKKGWFSSMFQSIA KANLEKSDLE ALK LK
Sbjct: 316 AKKKGWFSSMFQSIAGKANLEKSDLEPALKALK 348
Score = 31.6 bits (70), Expect(3) = 4e-52
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Frame = -1
Query: 733 GHESRVEYHVKSESKKRGNGSSEAGALDVNKLQKL---RTNQRWKEN*YCC*QGSKGGVK 563
G +S V ++ E N SS GA DVN+LQKL + N K+ +KG K
Sbjct: 191 GGKSSVNNNIGKE-----NESSNVGAFDVNRLQKLKGKKGNGNGKKKDALVVAAAKGEPK 245
Query: 562 EKQSLG**TIRVSD-----PKLDFTDPVEERGEQ 476
+ RV D KLDFTD V+ G++
Sbjct: 246 KVDKPN----RVWDQPAPQTKLDFTDHVDGDGDR 275
>ref|XP_004167396.1| PREDICTED: signal recognition particle receptor subunit alpha
homolog, partial [Cucumis sativus]
Length = 356
Score = 161 bits (407), Expect(2) = 3e-49
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = -2
Query: 285 KALKDRLMTKNVAEEIAEKLCESVAASLEGKNLGSFTRISSTIQTAMEEALVHILTPKRS 106
KALKDRLMTKNVAEEIAEKLCESVAASLEGK L SFTRISST+Q AMEEALV ILTP+RS
Sbjct: 75 KALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPRRS 134
Query: 105 IDILRDVHFSKEQGKPYVIVFIGVNVVGKSTNLAK 1
IDILRDVH +KEQ KPYV+VF+GVN VGKSTNLAK
Sbjct: 135 IDILRDVHAAKEQKKPYVVVFVGVNGVGKSTNLAK 169
Score = 61.2 bits (147), Expect(2) = 3e-49
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Frame = -3
Query: 476 NIEVVAANLGESMMXXXXXXXXXXXXXXXXDNKLG----AKKKGWFSSMFQSIAWKANLE 309
NI+V+AA+ G+SMM + G AKKKGWFSSMFQSI+ KA+L+
Sbjct: 7 NIDVLAADQGQSMMDKEEVFSSDSEDEEDEEGDKGSEPDAKKKGWFSSMFQSISGKASLD 66
Query: 308 KSDLESALKLLK 273
K+DLE ALK LK
Sbjct: 67 KADLEPALKALK 78
>ref|XP_003610309.1| Signal recognition particle receptor subunit alpha [Medicago
truncatula] gi|355511364|gb|AES92506.1| Signal
recognition particle receptor subunit alpha [Medicago
truncatula]
Length = 631
Score = 160 bits (404), Expect(2) = 7e-49
Identities = 82/95 (86%), Positives = 88/95 (92%)
Frame = -2
Query: 285 KALKDRLMTKNVAEEIAEKLCESVAASLEGKNLGSFTRISSTIQTAMEEALVHILTPKRS 106
KALKDRLMTKNVAEEIAEKLCESVAASLEGK L SFTRISST+Q AME+ALV ILTP+RS
Sbjct: 350 KALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRS 409
Query: 105 IDILRDVHFSKEQGKPYVIVFIGVNVVGKSTNLAK 1
IDILRDVH +KEQ KPYV+VF+GVN VGKSTNLAK
Sbjct: 410 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 444
Score = 60.8 bits (146), Expect(2) = 7e-49
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = -3
Query: 383 NKLGAKKKGWFSSMFQSIAWKANLEKSDLESALKLLK 273
+K AKKKGWFSSMFQSIA KANLEKSDLE ALK LK
Sbjct: 317 SKPDAKKKGWFSSMFQSIAGKANLEKSDLEPALKALK 353
>ref|XP_004144723.1| PREDICTED: signal recognition particle receptor subunit alpha
homolog [Cucumis sativus]
Length = 617
Score = 185 bits (470), Expect = 1e-44
Identities = 122/262 (46%), Positives = 149/262 (56%), Gaps = 10/262 (3%)
Frame = -2
Query: 756 LENGISNGGMKAELNIM*KVNQRKE---EMGVLKLGR*M*ISFRS*ELTKGGKKTDTVVN 586
LENG SNG E + VN ++ +G + + + +KGGKKTD V N
Sbjct: 175 LENGYSNGNHVIESKLTAVVNGKENTSSNVGAFDVNKLQKLR------SKGGKKTDPVAN 228
Query: 585 KAPKVE-----SKKNRVWDDKPSEYQXXXXXXXXX*KREGNKY*SC--GSESW*KYDGQG 427
K K E +KKNRVWD+KP+E + + G K +
Sbjct: 229 KGSKEEPKKKVTKKNRVWDEKPTEAKLDFTDPVGENGDNNIDVLAADQGQSMMDKEEVFS 288
Query: 426 RNYQQ*XXXXXXXRQQAWCKKEGMVFLNVPEYSVESKFGEVRPGISSKALKDRLMTKNVA 247
+ + + KK+G S ++ + + KALKDRLMTKNVA
Sbjct: 289 SDSEDEEDEEGDKGSKPDAKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVA 348
Query: 246 EEIAEKLCESVAASLEGKNLGSFTRISSTIQTAMEEALVHILTPKRSIDILRDVHFSKEQ 67
EEIAEKLCESVAASLEGK L SFTRISST+Q AMEEALV ILTP+RSIDILRDVH +KEQ
Sbjct: 349 EEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPRRSIDILRDVHAAKEQ 408
Query: 66 GKPYVIVFIGVNVVGKSTNLAK 1
KPYV+VF+GVN VGKSTNLAK
Sbjct: 409 KKPYVVVFVGVNGVGKSTNLAK 430
>ref|XP_002278056.1| PREDICTED: signal recognition particle receptor subunit alpha
[Vitis vinifera]
Length = 616
Score = 181 bits (460), Expect = 1e-43
Identities = 111/213 (52%), Positives = 131/213 (61%), Gaps = 7/213 (3%)
Frame = -2
Query: 618 KGGKKTDTVVNKAPKVE-----SKKNRVWDDKPSEYQXXXXXXXXX*KREGNKY*SC--G 460
KGGKKTDTVVNK KV+ +KKNRVWD P+E + E + G
Sbjct: 217 KGGKKTDTVVNKGSKVDPNKKITKKNRVWDVSPTESKLDFTDPADQNGDENAVIVAADEG 276
Query: 459 SESW*KYDGQGRNYQQ*XXXXXXXRQQAWCKKEGMVFLNVPEYSVESKFGEVRPGISSKA 280
K + + + KK+G + ++ + + KA
Sbjct: 277 ESMMDKEEIVSSESETEEDEEMEKDSKMETKKKGWFSAMFQSIAGKANLEKADLEPALKA 336
Query: 279 LKDRLMTKNVAEEIAEKLCESVAASLEGKNLGSFTRISSTIQTAMEEALVHILTPKRSID 100
LKDRLMTKNVAEEIAEKLCESVAASLEGK L SFTR+SST+Q AMEEALV ILTP+RSID
Sbjct: 337 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRVSSTVQAAMEEALVRILTPRRSID 396
Query: 99 ILRDVHFSKEQGKPYVIVFIGVNVVGKSTNLAK 1
ILRDVH +KEQ KPYV+VF+GVN VGKSTNLAK
Sbjct: 397 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 429