BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007531
         (1884 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632354.1| PREDICTED: CUGBP Elav-like family member 5 i...   110   1e-21
ref|XP_002520700.1| RNA binding protein, putative [Ricinus commu...   110   1e-21
ref|XP_002270390.1| PREDICTED: CUGBP Elav-like family member 5 i...   110   1e-21
emb|CAN71673.1| hypothetical protein VITISV_044358 [Vitis vinifera]   110   1e-21
ref|XP_002320377.1| predicted protein [Populus trichocarpa] gi|2...   103   1e-19

>ref|XP_003632354.1| PREDICTED: CUGBP Elav-like family member 5 isoform 2 [Vitis vinifera]
          Length = 447

 Score =  110 bits (275), Expect = 1e-21
 Identities = 61/126 (48%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
 Frame = +2

Query: 1517 YGLRQYMCTQMQNRPGSHNLIPPVSHRSAFRVISPDLLPGIGPRNSVTVPFGSCLGPAHP 1696
            YGL QY    MQ++   HN+IP V+  SA R I+PDL   + PRN   VP  S +G A+P
Sbjct: 246  YGLMQYRMPPMQSQAAFHNMIPQVNQGSAMRAIAPDLARAVAPRN-YAVPSASYMGSAYP 304

Query: 1697 PEPGPWYPVAYPGRIISPRPI--SRGFTPPEIMSSRGTFQT--SVSSGAQVEGPPGANLF 1864
              PG  YP+AY G I+S +P+  S G  PP +M+S     +    SSG QVEGPPGANLF
Sbjct: 305  ALPGLQYPMAYHGGIMSHQPLSGSPGSRPPAMMTSNSPTNSGAGASSGGQVEGPPGANLF 364

Query: 1865 VSNIPQ 1882
            + +IPQ
Sbjct: 365  IYHIPQ 370


>ref|XP_002520700.1| RNA binding protein, putative [Ricinus communis]
            gi|223540085|gb|EEF41662.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 436

 Score =  110 bits (275), Expect = 1e-21
 Identities = 60/128 (46%), Positives = 82/128 (64%), Gaps = 5/128 (3%)
 Frame = +2

Query: 1514 TYGLRQYMCTQMQNRPGSHNLIPPVSHRSAFRV-ISPDLLPGIGPRNSVTVPFGSCLGPA 1690
            TYGL  Y    +Q++P  H++IPPV+  +A R  + PDL P +GPRN   +P  S +G A
Sbjct: 234  TYGLMPYRLPPLQSQPAFHSIIPPVNQGNALRGGVRPDLGPSMGPRN-YALPPASYVGSA 292

Query: 1691 HPPEPGPWYPVAYPGRIISPRPISR--GFTPPEIMSSRGTFQTSV--SSGAQVEGPPGAN 1858
            +P  PG  YP+AYPG ++SPRP+S   G   P + SS     + V  SSG Q+EGPPG+N
Sbjct: 293  YPAVPGIQYPMAYPGGMMSPRPLSSSPGAVSPTVGSSNSATSSGVSSSSGGQLEGPPGSN 352

Query: 1859 LFVSNIPQ 1882
            LF+ +IPQ
Sbjct: 353  LFIYHIPQ 360


>ref|XP_002270390.1| PREDICTED: CUGBP Elav-like family member 5 isoform 1 [Vitis vinifera]
            gi|296086641|emb|CBI32276.3| unnamed protein product
            [Vitis vinifera]
          Length = 437

 Score =  110 bits (275), Expect = 1e-21
 Identities = 61/126 (48%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
 Frame = +2

Query: 1517 YGLRQYMCTQMQNRPGSHNLIPPVSHRSAFRVISPDLLPGIGPRNSVTVPFGSCLGPAHP 1696
            YGL QY    MQ++   HN+IP V+  SA R I+PDL   + PRN   VP  S +G A+P
Sbjct: 236  YGLMQYRMPPMQSQAAFHNMIPQVNQGSAMRAIAPDLARAVAPRN-YAVPSASYMGSAYP 294

Query: 1697 PEPGPWYPVAYPGRIISPRPI--SRGFTPPEIMSSRGTFQT--SVSSGAQVEGPPGANLF 1864
              PG  YP+AY G I+S +P+  S G  PP +M+S     +    SSG QVEGPPGANLF
Sbjct: 295  ALPGLQYPMAYHGGIMSHQPLSGSPGSRPPAMMTSNSPTNSGAGASSGGQVEGPPGANLF 354

Query: 1865 VSNIPQ 1882
            + +IPQ
Sbjct: 355  IYHIPQ 360


>emb|CAN71673.1| hypothetical protein VITISV_044358 [Vitis vinifera]
          Length = 450

 Score =  110 bits (275), Expect = 1e-21
 Identities = 61/126 (48%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
 Frame = +2

Query: 1517 YGLRQYMCTQMQNRPGSHNLIPPVSHRSAFRVISPDLLPGIGPRNSVTVPFGSCLGPAHP 1696
            YGL QY    MQ++   HN+IP V+  SA R I+PDL   + PRN   VP  S +G A+P
Sbjct: 290  YGLMQYRMPPMQSQAAFHNMIPQVNQGSAMRAIAPDLARAVAPRN-YAVPSASYMGSAYP 348

Query: 1697 PEPGPWYPVAYPGRIISPRPI--SRGFTPPEIMSSRGTFQT--SVSSGAQVEGPPGANLF 1864
              PG  YP+AY G I+S +P+  S G  PP +M+S     +    SSG QVEGPPGANLF
Sbjct: 349  ALPGLQYPMAYHGGIMSHQPLSGSPGSRPPAMMTSNSPTNSGAGASSGGQVEGPPGANLF 408

Query: 1865 VSNIPQ 1882
            + +IPQ
Sbjct: 409  IYHIPQ 414


>ref|XP_002320377.1| predicted protein [Populus trichocarpa] gi|222861150|gb|EEE98692.1|
            predicted protein [Populus trichocarpa]
          Length = 432

 Score =  103 bits (258), Expect = 1e-19
 Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
 Frame = +2

Query: 1517 YGLRQYMCTQMQNRPGSHNLIPPVSHRSAFRV-ISPDLLPGIGPRNSVTVPFGSCLGPAH 1693
            YGL  Y    MQN+P  H+++PPV+  +  R  I PDL P I PRN     +   +G A+
Sbjct: 234  YGLMPYRLPPMQNQPAFHSMVPPVNQGNVLRGGIRPDLSPNISPRNYAPATY---MGSAY 290

Query: 1694 PPEPGPWYPVAYPGRIISPRPISR--GFTPPEIMSSRGTFQTSV--SSGAQVEGPPGANL 1861
            P   G  YPVAYPG +++ RP+S   G   P ++SS     + V  SSG QVEGPPGANL
Sbjct: 291  PTVTGLQYPVAYPGAMMTHRPLSSSPGALSPTVVSSNSATPSGVGGSSGVQVEGPPGANL 350

Query: 1862 FVSNIPQ 1882
            F+ +IPQ
Sbjct: 351  FIYHIPQ 357