BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007503
         (1338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein o...   497   e-138
ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein o...   490   e-136
ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein o...   488   e-135
ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [P...   488   e-135
ref|XP_002510744.1| chlorophyll A/B binding protein, putative [R...   486   e-135

>ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic [Vitis vinifera]
            gi|297745621|emb|CBI40786.3| unnamed protein product
            [Vitis vinifera]
          Length = 331

 Score =  497 bits (1279), Expect = e-138
 Identities = 235/306 (76%), Positives = 260/306 (84%)
 Frame = -2

Query: 1232 FGYRLLSKXXXXXXXXXXXXXXXXTCRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQ 1053
            + +RL SK                 C+ASWQELAGVL+FSAIPFTAVKAIANS LG +LQ
Sbjct: 20   YRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQ 79

Query: 1052 KRLMETKASAVLNSSNFNASAQKAREYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGF 873
             R+ E K +AV NSS F A A+KA+  S WYG+ERPRWLGPIPYDYPAYLTGELPGDYGF
Sbjct: 80   SRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGF 139

Query: 872  DVLGLSQDPVAFHKYFNFEILHARWAMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKL 693
            D+ GL +DPVAF KYFNFEILHARWAMLA+LGAL+PELLDL G  HF+EPVWWRVGY+KL
Sbjct: 140  DIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFHFVEPVWWRVGYSKL 199

Query: 692  KGDTLDYLGIPGLHIAGSQGVIVIAVCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYP 513
            KGDTLDYLGIPG H AGSQGVIVIA+CQALLMVGPEYARYCGIEALEPLGIYLPGD+NYP
Sbjct: 200  KGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYP 259

Query: 512  GGILFDPLGLSKDPVAFEELKVKEIKNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDP 333
            GG LFDPL LSKDPVAFEELKVKEIKNGRLAM+AWLGF +QAA TGKGP+ NLL+H++DP
Sbjct: 260  GGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATGKGPVQNLLDHLADP 319

Query: 332  FHKNVL 315
            FH N+L
Sbjct: 320  FHNNLL 325


>ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic-like [Cucumis sativus]
          Length = 338

 Score =  490 bits (1261), Expect = e-136
 Identities = 228/281 (81%), Positives = 255/281 (90%)
 Frame = -2

Query: 1157 CRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAR 978
            CRASWQELAGVL+FSAIPFTAVKAIANS LG +LQ++L + K SAV NSS F A A++AR
Sbjct: 49   CRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEAR 108

Query: 977  EYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARW 798
            + S WYG+ERPRWLGP+PYDYP YLTGELPGDYGFD+ GLS+DPVAF K+FNFEILHARW
Sbjct: 109  KDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARW 168

Query: 797  AMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIA 618
            AMLASLGALVPE+LD+ G  HF EP+WWRVGY+KLKGDTLDYLGIPGLH+AGSQGVIVIA
Sbjct: 169  AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 228

Query: 617  VCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEI 438
            +CQA+LMVGPEYARYCGIEALEPLGIYLPGD+NYPGG+LFDPL LSKD  AFEELKVKEI
Sbjct: 229  ICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEI 288

Query: 437  KNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDPFHKNVL 315
            KNGRLAM+AWLGF  QAA+TGKGP+ NLL+HI+DPFH N L
Sbjct: 289  KNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFL 329


>ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic-like [Cucumis sativus]
          Length = 338

 Score =  488 bits (1257), Expect = e-135
 Identities = 228/281 (81%), Positives = 254/281 (90%)
 Frame = -2

Query: 1157 CRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAR 978
            CRASWQELAGVL+FSAIPFTAVKAIANS LG +LQ++L + K SAV NSS F A A++AR
Sbjct: 49   CRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEAR 108

Query: 977  EYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARW 798
            + S WYG+ERPRWLGP+PYDYP YLTGELPGDYGFD+ GLS+DPVAF K+FNFEILHARW
Sbjct: 109  KDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARW 168

Query: 797  AMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIA 618
            AMLASLGALVPE+LD+ G  HF EP+WWRVGY+KLKGDTLDYLGIPGLH+AGSQGVIVIA
Sbjct: 169  AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 228

Query: 617  VCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEI 438
            +CQA+LMVGPEYARYCGIEALEPLGIYLPGD+NYPGG+LFDPL LSKD  AFEELKVKEI
Sbjct: 229  ICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEI 288

Query: 437  KNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDPFHKNVL 315
            KNGRLAM+AWLGF  QAA+TGKGP+ NLL HI+DPFH N L
Sbjct: 289  KNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADPFHNNFL 329


>ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
            gi|222856453|gb|EEE94000.1| light-harvesting complex II
            protein Lhcb7 [Populus trichocarpa]
          Length = 338

 Score =  488 bits (1255), Expect = e-135
 Identities = 228/280 (81%), Positives = 253/280 (90%)
 Frame = -2

Query: 1157 CRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAR 978
            C+ASWQELAGV++FSAIPFTAVKAIANS LG +LQ+RL E K  AV  SS F A AQKAR
Sbjct: 52   CKASWQELAGVVIFSAIPFTAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKAR 111

Query: 977  EYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARW 798
            + SFWYG+ERPRWLGPI Y YP YL+GELPGDYGFDV GL++DPVAF +YFNFEILHARW
Sbjct: 112  KESFWYGEERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARW 171

Query: 797  AMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIA 618
            AMLA+LGAL+PE+LDLSG  HFIEPVWWRVGY+KLKGDTLDYLGIPGLH AG QGV+VIA
Sbjct: 172  AMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIA 231

Query: 617  VCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEI 438
             CQA+LMVGPEYARYCGIEALEPLGIYLPGD+NYPGGILFDPL LSKDPV+FEELKVKEI
Sbjct: 232  FCQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKEI 291

Query: 437  KNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDPFHKNV 318
            KNGRLAM+AWLGF +QAA+TGKGP+ NL+EHISDP H N+
Sbjct: 292  KNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNNL 331


>ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
            gi|223551445|gb|EEF52931.1| chlorophyll A/B binding
            protein, putative [Ricinus communis]
          Length = 329

 Score =  486 bits (1251), Expect = e-135
 Identities = 231/281 (82%), Positives = 251/281 (89%)
 Frame = -2

Query: 1157 CRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAR 978
            C+ASWQELAGVLVFSAIPFTAVKA+ANS LG +LQ+RL E+K  AV  SS F A   KAR
Sbjct: 43   CKASWQELAGVLVFSAIPFTAVKALANSPLGESLQRRLEESKKVAVKESSKFQALTAKAR 102

Query: 977  EYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARW 798
            + S WYG+ERPRWLGPIPYDYPAYLTGELPGDYGFDV GLS+D VAF +YFNFEILHARW
Sbjct: 103  KESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARW 162

Query: 797  AMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIA 618
            AMLA+LGAL PE+LDLSG  HFIEPVWWRVGY+KLKGDTLDYLGIPGLH AGSQGV+VIA
Sbjct: 163  AMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIA 222

Query: 617  VCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEI 438
            +CQALLMVGPEYARYCGIEALEPLGIYLPGD+NYPGG LFDPL LS D VA EELKVKEI
Sbjct: 223  ICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEI 282

Query: 437  KNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDPFHKNVL 315
            KNGRLAM+AWLGF  QAA+TGKGP+ NL+EHISDPFH N+L
Sbjct: 283  KNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNNLL 323