BLASTX nr result

ID: Coptis25_contig00007477 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007477
         (496 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002334089.1| predicted protein [Populus trichocarpa] gi|2...    86   3e-15
ref|XP_002297954.1| predicted protein [Populus trichocarpa] gi|2...    86   4e-15
ref|XP_002324404.1| predicted protein [Populus trichocarpa] gi|2...    82   3e-14
emb|CAN73349.1| hypothetical protein VITISV_009748 [Vitis vinifera]    82   3e-14
emb|CAN64509.1| hypothetical protein VITISV_041217 [Vitis vinifera]    81   8e-14

>ref|XP_002334089.1| predicted protein [Populus trichocarpa] gi|222839595|gb|EEE77932.1|
           predicted protein [Populus trichocarpa]
          Length = 385

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
 Frame = +3

Query: 186 SLSAPNVGHFLKLSGDNYITWLRQMEPFLYGHDFMKYVDGSHPTPPRT-LTGSTEGT-TI 359
           S  + N+  F KL+  NY+TWL+Q++P+L+G     YVDG+ P P  T LT  T+ T +I
Sbjct: 6   SALSQNIAQFTKLTETNYLTWLQQIKPYLHGAKLWGYVDGTIPEPSLTILTTDTQSTRSI 65

Query: 360 ANPAFMQWFQTDQLIISYITSTLTQSMLALLSDITTSQAVWSSL 491
            NP    WF  DQ I+S +T+TLT+++  L     TS+A+W  L
Sbjct: 66  PNPDHASWFIIDQQIVSILTTTLTENIAQLTIGFDTSKAIWDCL 109


>ref|XP_002297954.1| predicted protein [Populus trichocarpa] gi|222845212|gb|EEE82759.1|
           predicted protein [Populus trichocarpa]
          Length = 319

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
 Frame = +3

Query: 216 LKLSGDNYITWLRQMEPFLYGHDFMKYVDGSHPTPPRTLTGSTEGTTIA--NPAFMQWFQ 389
           +KL+ DNY  WL Q+ P L G +   YVDG+ P PP T++ + +G TI   NPAF+ W  
Sbjct: 24  VKLTRDNYPLWLPQIVPHLRGGNLFGYVDGTTPPPPSTVSSTIDGVTITSPNPAFLHWTI 83

Query: 390 TDQLIISYITSTLTQSMLALLSDITTSQAVWSSL 491
            DQ+I+  I STLT+ ML  ++  TT+++ W++L
Sbjct: 84  QDQIILGAINSTLTEKMLTHVTRCTTTRSAWTTL 117


>ref|XP_002324404.1| predicted protein [Populus trichocarpa] gi|222865838|gb|EEF02969.1|
           predicted protein [Populus trichocarpa]
          Length = 344

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
 Frame = +3

Query: 216 LKLSGDNYITWLRQMEPFLYGHDFMKYVDGSHPTPPRTLTGSTEG--TTIANPAFMQWFQ 389
           +KL+ DNY  WL Q+ P L G +   YVD S P PP T++ + +G  TT  NP F+ W +
Sbjct: 24  VKLTRDNYPLWLPQIVPHLRGRNLFGYVDDSTPPPPSTVSSTIDGVTTTSPNPVFLHWTK 83

Query: 390 TDQLIISYITSTLTQSMLALLSDITTSQAVWSSL 491
            DQ+I+  I STLT+ ML  +   TTS + W++L
Sbjct: 84  QDQIILGAINSTLTEKMLTHVIRCTTSISAWTTL 117


>emb|CAN73349.1| hypothetical protein VITISV_009748 [Vitis vinifera]
          Length = 424

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 35/98 (35%), Positives = 57/98 (58%)
 Frame = +3

Query: 189 LSAPNVGHFLKLSGDNYITWLRQMEPFLYGHDFMKYVDGSHPTPPRTLTGSTEGTTIANP 368
           L+   + + +KL+  NY++W  QME  L G+D  K++DGSHP PP T+T  T      NP
Sbjct: 20  LTMITIHNSIKLTPTNYLSWKTQMEAILIGYDLQKFIDGSHPAPPTTIT--TNNVVFTNP 77

Query: 369 AFMQWFQTDQLIISYITSTLTQSMLALLSDITTSQAVW 482
           A+  W + D+L+   +  TL+ +++ L++   TS   W
Sbjct: 78  AYQTWLRQDKLLFGALVGTLSPTLIPLITQSKTSYEAW 115


>emb|CAN64509.1| hypothetical protein VITISV_041217 [Vitis vinifera]
          Length = 1269

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 36/101 (35%), Positives = 57/101 (56%)
 Frame = +3

Query: 189 LSAPNVGHFLKLSGDNYITWLRQMEPFLYGHDFMKYVDGSHPTPPRTLTGSTEGTTIANP 368
           L+   + + +KL+  NY +W  QME  L G+D  K++DGSHP PP T+T  T      NP
Sbjct: 7   LTMITIHNSIKLTPTNYFSWKTQMEAILIGYDLQKFIDGSHPAPPTTIT--TNNVVSTNP 64

Query: 369 AFMQWFQTDQLIISYITSTLTQSMLALLSDITTSQAVWSSL 491
           A+  W + D+L+   +  TL+ +++ L++   TS   W  L
Sbjct: 65  AYQTWLRQDKLLFGALVDTLSPTLVPLITQSKTSYEAWQIL 105


Top