BLASTX nr result
ID: Coptis25_contig00007459
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00007459
(442 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274072.1| PREDICTED: putative E3 ubiquitin-protein lig... 62 5e-13
ref|XP_003563184.1| PREDICTED: probable E3 ubiquitin-protein lig... 57 3e-12
gb|EAZ03703.1| hypothetical protein OsI_25836 [Oryza sativa Indi... 54 2e-11
ref|NP_001059535.1| Os07g0446100 [Oryza sativa Japonica Group] g... 54 2e-11
gb|EAZ39648.1| hypothetical protein OsJ_24077 [Oryza sativa Japo... 54 2e-11
>ref|XP_002274072.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 [Vitis
vinifera] gi|302143289|emb|CBI21850.3| unnamed protein
product [Vitis vinifera]
Length = 497
Score = 62.4 bits (150), Expect(2) = 5e-13
Identities = 28/58 (48%), Positives = 38/58 (65%)
Frame = +1
Query: 268 PSAPPVPEGAENGPIHYPSVDSSPIDFPAQSMDGKVAKPSEAKEDGTDSSSCVICLDA 441
PSAPP+PE GP++YP +D SP+D + + A S+ K+ G DSSSCVIC +A
Sbjct: 396 PSAPPIPEALTEGPVYYPPIDLSPVDLSVPAAEYDAAGTSKTKDKG-DSSSCVICWEA 452
Score = 36.6 bits (83), Expect(2) = 5e-13
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 SIHSAMELRPPL-PDAHMTTGASNTNDWINSADDNSRHNGWGSSEGSAPPFKGSSSGW-D 176
SI SA +P L + + AS+TN W N D N+ H GW S +G+ SSSGW D
Sbjct: 290 SIQSAAVDQPVLLSSTRLGSEASSTNGWGNPVD-NTSHGGW-SLDGTPTHSASSSSGWAD 347
Query: 177 VLQPGPSNTRTAQQNFRCRNDSR 245
+ G N ++ RN ++
Sbjct: 348 ESKRGEFNGLGVPESRLIRNQTQ 370
>ref|XP_003563184.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS34-like
[Brachypodium distachyon]
Length = 515
Score = 57.0 bits (136), Expect(2) = 3e-12
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Frame = +1
Query: 247 LPGIDAIPSAPPVPEGA-ENGPIHYPSVDSSPIDFPAQSMDGKV----AKPSEAKED--- 402
LP I P+APP+ EG NGPI YPS+D +P+D + +G V +KP E D
Sbjct: 398 LPAIPT-PTAPPLAEGTFYNGPIQYPSIDFTPVDVTMPTAEGAVVVNSSKPGENDADTSS 456
Query: 403 -GTDSSSCVICLDA 441
T S +CVICLDA
Sbjct: 457 GNTPSGTCVICLDA 470
Score = 39.3 bits (90), Expect(2) = 3e-12
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Frame = +3
Query: 3 SIHSAMELRPPLPDAHMTTGASNTNDWINSADDNSRHNGWGSSEGSAP-----------P 149
SI SA + +P+ TT NTN W N+A NS +GWG + AP P
Sbjct: 296 SIQSA--IAEGVPNIEPTTSTINTNGWGNTA--NSSLSGWGPPDAHAPSKISGQGQADAP 351
Query: 150 FKGSSSGWDVLQPGPSNTRTA 212
+ +GWD+ PG S ++++
Sbjct: 352 SSSTYNGWDI--PGTSASQSS 370
>gb|EAZ03703.1| hypothetical protein OsI_25836 [Oryza sativa Indica Group]
Length = 493
Score = 53.5 bits (127), Expect(2) = 2e-11
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 20/96 (20%)
Frame = +1
Query: 214 SKTSVVAMIQE-LPGIDAIPSAPPVPEGA-ENGPIHYPSVDSSPIDFPAQSMDG----KV 375
S+ S + QE LP + +P+APP+ G +GPI YPS+DS+P+D S DG
Sbjct: 354 SQNSTFVVPQEALPSLP-VPTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSS 412
Query: 376 AKPSEAKED--------------GTDSSSCVICLDA 441
AKP+E + D T +CVICLDA
Sbjct: 413 AKPAENEGDAKPAESDANASNSGNTPPGTCVICLDA 448
Score = 40.0 bits (92), Expect(2) = 2e-11
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Frame = +3
Query: 3 SIHSAMELRPPLPDAHMTTGASNTNDWINSADDNSRHNGWGSSEGSAP-------PFKGS 161
SI SA + +PD T + TNDW N ++ NGWG + SAP P S
Sbjct: 274 SIQSA--IAEGVPDVQPITTTTATNDWGNPPSNSL--NGWGPPDTSAPSKTSGQVPVVTS 329
Query: 162 SS----GWDVLQPGPSNTRTAQQNFRCRNDS 242
SS GWDV PG S+ +++ ++ + +N +
Sbjct: 330 SSSTYNGWDV--PGTSSGQSSSKHNKSQNST 358
>ref|NP_001059535.1| Os07g0446100 [Oryza sativa Japonica Group]
gi|75327171|sp|Q7XI08.1|XB34_ORYSJ RecName:
Full=Probable E3 ubiquitin-protein ligase XBOS34;
AltName: Full=Ankyrin repeat domain and RING
finger-containing protein XBOS34; AltName: Full=XB3
protein homolog 4 gi|33146928|dbj|BAC79949.1|
auxin-regulated protein-like protein [Oryza sativa
Japonica Group] gi|113611071|dbj|BAF21449.1|
Os07g0446100 [Oryza sativa Japonica Group]
Length = 513
Score = 53.5 bits (127), Expect(2) = 2e-11
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 20/96 (20%)
Frame = +1
Query: 214 SKTSVVAMIQE-LPGIDAIPSAPPVPEGA-ENGPIHYPSVDSSPIDFPAQSMDG----KV 375
S+ S + QE LP + +P+APP+ G +GPI YPS+DS+P+D S DG
Sbjct: 374 SQNSTFVVPQEALPSLP-VPTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSS 432
Query: 376 AKPSEAKED--------------GTDSSSCVICLDA 441
AKP+E + D T +CVICLDA
Sbjct: 433 AKPAENEGDAKPAESDANASNSGNTPPGTCVICLDA 468
Score = 39.7 bits (91), Expect(2) = 2e-11
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Frame = +3
Query: 36 LPDAHMTTGASNTNDWINSADDNSRHNGWGSSEGSAP-------PFKGSSS----GWDVL 182
+PD T + TNDW N ++ NGWG + SAP P SSS GWDV
Sbjct: 303 VPDVQPITTTTATNDWGNPPSNSL--NGWGPPDTSAPSKTSGQVPVVTSSSSTYNGWDV- 359
Query: 183 QPGPSNTRTAQQNFRCRNDS 242
PG S+ +++ ++ + +N +
Sbjct: 360 -PGTSSGQSSSKHNKSQNST 378
>gb|EAZ39648.1| hypothetical protein OsJ_24077 [Oryza sativa Japonica Group]
Length = 493
Score = 53.5 bits (127), Expect(2) = 2e-11
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 20/96 (20%)
Frame = +1
Query: 214 SKTSVVAMIQE-LPGIDAIPSAPPVPEGA-ENGPIHYPSVDSSPIDFPAQSMDG----KV 375
S+ S + QE LP + +P+APP+ G +GPI YPS+DS+P+D S DG
Sbjct: 354 SQNSTFVVPQEALPSLP-VPTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSS 412
Query: 376 AKPSEAKED--------------GTDSSSCVICLDA 441
AKP+E + D T +CVICLDA
Sbjct: 413 AKPAENEGDAKPAESDANASNSGNTPPGTCVICLDA 448
Score = 39.7 bits (91), Expect(2) = 2e-11
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Frame = +3
Query: 36 LPDAHMTTGASNTNDWINSADDNSRHNGWGSSEGSAP-------PFKGSSS----GWDVL 182
+PD T + TNDW N ++ NGWG + SAP P SSS GWDV
Sbjct: 283 VPDVQPITTTTATNDWGNPPSNSL--NGWGPPDTSAPSKTSGQVPVVTSSSSTYNGWDV- 339
Query: 183 QPGPSNTRTAQQNFRCRNDS 242
PG S+ +++ ++ + +N +
Sbjct: 340 -PGTSSGQSSSKHNKSQNST 358