BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007405
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264970.2| PREDICTED: DNA topoisomerase 3-beta-1-like [...   204   5e-51
ref|XP_002516387.1| prokaryotic DNA topoisomerase, putative [Ric...   204   8e-51
ref|XP_002321105.1| predicted protein [Populus trichocarpa] gi|2...   204   8e-51
ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [...   193   1e-47
ref|NP_001169181.1| uncharacterized protein LOC100383032 [Zea ma...   191   4e-47

>ref|XP_002264970.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Vitis vinifera]
          Length = 894

 Score =  204 bits (520), Expect = 5e-51
 Identities = 97/132 (73%), Positives = 107/132 (81%), Gaps = 2/132 (1%)
 Frame = -1

Query: 516  CACPECDGTLVLDPVSGPKWRLYCNMCNCLVFLPQGAHRISTTRDRCVECDSTILEVDFN 337
            CACPEC GTLVLDPVS PKWRLYCNMCNCLV+LPQGAH+ISTTRDRC EC+STILEVDFN
Sbjct: 763  CACPECSGTLVLDPVSAPKWRLYCNMCNCLVYLPQGAHKISTTRDRCPECESTILEVDFN 822

Query: 336  KKTTPLSDGATLHSGCILCDDLLHSLVEMKHGKSFYKR--TXXXXXXXXXXXXXXXXXXG 163
            KKTTPL DG+TL++GCILCD+LLHSLVEMKHGKSF+KR  +                  G
Sbjct: 823  KKTTPLLDGSTLYTGCILCDELLHSLVEMKHGKSFFKRMGSRGRGRGSGRGGFRGRGRGG 882

Query: 162  KREDPKMSFRDF 127
            K +DPKMSFRDF
Sbjct: 883  KWDDPKMSFRDF 894


>ref|XP_002516387.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223544485|gb|EEF46004.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 865

 Score =  204 bits (518), Expect = 8e-51
 Identities = 97/131 (74%), Positives = 103/131 (78%), Gaps = 1/131 (0%)
 Frame = -1

Query: 516  CACPECDGTLVLDPVSGPKWRLYCNMCNCLVFLPQGAHRISTTRDRCVECDSTILEVDFN 337
            CACPEC GTLVLDPVS PKWRLYCNMCNCLV LPQGAHRI+TTR+RC ECDSTI+EVDFN
Sbjct: 735  CACPECSGTLVLDPVSAPKWRLYCNMCNCLVLLPQGAHRIATTRERCPECDSTIIEVDFN 794

Query: 336  KKTTPLSDGATLHSGCILCDDLLHSLVEMKHGKSFYKRT-XXXXXXXXXXXXXXXXXXGK 160
            K TTPL DGATLH GCILCDDLLHSLVE+KHGKSF+KR                    G+
Sbjct: 795  KNTTPLEDGATLHIGCILCDDLLHSLVEVKHGKSFFKRLGAGRRGRGAGRGRGRGRSSGR 854

Query: 159  REDPKMSFRDF 127
            R DPKMSFRDF
Sbjct: 855  RGDPKMSFRDF 865


>ref|XP_002321105.1| predicted protein [Populus trichocarpa] gi|222861878|gb|EEE99420.1|
            predicted protein [Populus trichocarpa]
          Length = 837

 Score =  204 bits (518), Expect = 8e-51
 Identities = 93/130 (71%), Positives = 102/130 (78%)
 Frame = -1

Query: 516  CACPECDGTLVLDPVSGPKWRLYCNMCNCLVFLPQGAHRISTTRDRCVECDSTILEVDFN 337
            CACPEC+GTLVLDP+S PKWRLYCNMCNCLV LPQGAHRISTTR++C ECDSTI+EVDFN
Sbjct: 708  CACPECNGTLVLDPISAPKWRLYCNMCNCLVLLPQGAHRISTTREQCPECDSTIIEVDFN 767

Query: 336  KKTTPLSDGATLHSGCILCDDLLHSLVEMKHGKSFYKRTXXXXXXXXXXXXXXXXXXGKR 157
            K TTPL DGATLH GCILCD+LLHSLVE+KHGKSF+KR                     +
Sbjct: 768  KNTTPLEDGATLHVGCILCDNLLHSLVEVKHGKSFFKRAGKWARARGRGAYRGRGRGLGK 827

Query: 156  EDPKMSFRDF 127
             DPKMSFRDF
Sbjct: 828  MDPKMSFRDF 837


>ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max]
          Length = 863

 Score =  193 bits (490), Expect = 1e-47
 Identities = 92/131 (70%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
 Frame = -1

Query: 516  CACPECDGTLVLDPVSGPKWRLYCNMCNCLVFLPQGAHRISTTRDRCVECDSTILEVDFN 337
            CACPEC GTLVLDPVS P+W+L CNMCNCLVFL QGAHRISTT+DRC ECDS+I+EVDFN
Sbjct: 733  CACPECSGTLVLDPVSAPRWKLCCNMCNCLVFLAQGAHRISTTKDRCPECDSSIIEVDFN 792

Query: 336  KKTTPLSDGATLHSGCILCDDLLHSLVEMKHGKSF-YKRTXXXXXXXXXXXXXXXXXXGK 160
            KKTTPL DGATLH GCILCD+LLHSLVEMKHG+SF +  +                  GK
Sbjct: 793  KKTTPLEDGATLHHGCILCDELLHSLVEMKHGRSFRHMSSRGRGRGARKGGRGRGRGGGK 852

Query: 159  REDPKMSFRDF 127
              DPKMSFRDF
Sbjct: 853  MMDPKMSFRDF 863


>ref|NP_001169181.1| uncharacterized protein LOC100383032 [Zea mays]
           gi|223975359|gb|ACN31867.1| unknown [Zea mays]
          Length = 246

 Score =  191 bits (486), Expect = 4e-47
 Identities = 89/135 (65%), Positives = 100/135 (74%), Gaps = 5/135 (3%)
 Frame = -1

Query: 516 CACPECDGTLVLDPVSGPKWRLYCNMCNCLVFLPQGAHRISTTRDRCVECDSTILEVDFN 337
           CACPEC GTL+LDPVS PKWRLYCNMCNC+V LP  AHRI+TT  +C+ C+STI+EVDFN
Sbjct: 112 CACPECSGTLILDPVSAPKWRLYCNMCNCIVLLPHAAHRITTTDKKCLTCESTIIEVDFN 171

Query: 336 KKTTPLSDGATLHSGCILCDDLLHSLVEMKHGKSFYKRTXXXXXXXXXXXXXXXXXXGKR 157
           KKTTPL DGATLH GCILCDDLLHSL+EMKHGKSF+ R                   G+R
Sbjct: 172 KKTTPLQDGATLHEGCILCDDLLHSLIEMKHGKSFFIRRGRGRGRGRGRGRGSSRGRGRR 231

Query: 156 -----EDPKMSFRDF 127
                +DPKMSFRDF
Sbjct: 232 GNSRYDDPKMSFRDF 246