BLASTX nr result
ID: Coptis25_contig00007389
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00007389 (446 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002322524.1| predicted protein [Populus trichocarpa] gi|2... 79 3e-13 ref|XP_003614205.1| F-box/kelch-repeat protein [Medicago truncat... 79 5e-13 ref|XP_003614204.1| F-box protein [Medicago truncatula] gi|35551... 75 4e-12 ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata sub... 73 2e-11 ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 72 4e-11 >ref|XP_002322524.1| predicted protein [Populus trichocarpa] gi|222867154|gb|EEF04285.1| predicted protein [Populus trichocarpa] Length = 430 Score = 79.3 bits (194), Expect = 3e-13 Identities = 51/152 (33%), Positives = 90/152 (59%), Gaps = 13/152 (8%) Frame = +2 Query: 29 AFGFDSVNNEYKVVRILRAGSTNGN------EVEVHTLGGSDSWRKVIAPR-LHLTLPRY 187 AFG DS N++Y+V+RI++ + + V++L ++SWR+++AP LH + + Sbjct: 194 AFGHDSFNDDYRVLRIVQQNPGMPDPDKFILKAMVYSLK-ANSWREIVAPGYLHYIVSKE 252 Query: 188 -VIFRNCLHWVAMVESHSHRTYVILSFDLATEEFSIMQLP-----WSVFSGVLMVFRECL 349 V+ R+ HW+ +++ H I++FD+ EE+ + LP S++ L V R+CL Sbjct: 253 SVLVRDAFHWL-LIQGHG---LDIVAFDIQREEYCTVPLPNLETKSSLYYRNLGVLRQCL 308 Query: 350 CLMDGLGRDRELWMMKDYGIEISWVKEFVLER 445 L + E+W+MK+YG++ SWVK F+LE+ Sbjct: 309 SLASSSVHNVEIWVMKEYGMKDSWVKLFLLEK 340 >ref|XP_003614205.1| F-box/kelch-repeat protein [Medicago truncatula] gi|357487837|ref|XP_003614206.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355515540|gb|AES97163.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355515541|gb|AES97164.1| F-box/kelch-repeat protein [Medicago truncatula] Length = 351 Score = 78.6 bits (192), Expect = 5e-13 Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 9/142 (6%) Frame = +2 Query: 29 AFGFDSVNNEYKVVRILRAGSTNGNEVEVHTLGGSDSWRKV--IAPRLHLTLPRYVIFRN 202 +FG+D + YK++ + + + NE+ VHTLG ++ WR++ H+ P + ++ Sbjct: 145 SFGYDPFIDNYKIIVVYFSRESEKNEISVHTLG-TEYWRRIQDFPFSGHIGGPG-IFVKD 202 Query: 203 CLHWVAMVESHSHRTYVILSFDLATEEFSIMQLP-------WSVFSGVLMVFRECLCLMD 361 ++W+A ++ + I+S DL TE + I+ +P WS L V R+CLC+ Sbjct: 203 TVNWLAFENVDNNGLFAIVSLDLETESYEIISIPDVNSDKYWS-----LEVLRDCLCIYV 257 Query: 362 GLGRDRELWMMKDYGIEISWVK 427 D ++W+MK+YGI+ SW K Sbjct: 258 TSDLDLDVWIMKEYGIKESWTK 279 >ref|XP_003614204.1| F-box protein [Medicago truncatula] gi|355515539|gb|AES97162.1| F-box protein [Medicago truncatula] Length = 254 Score = 75.5 bits (184), Expect = 4e-12 Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 9/142 (6%) Frame = +2 Query: 29 AFGFDSVNNEYKVVRILRAGSTNGNEVEVHTLGGSDSWRKV--IAPRLHLTLPRYVIFRN 202 +FG+D + YK++ + + + NE+ VHTLG ++ WR++ H+ P + ++ Sbjct: 48 SFGYDPFIDNYKLIVVYFSRESEKNEISVHTLG-TEYWRRIQDFPFSGHIGGPG-IFVKD 105 Query: 203 CLHWVAMVESHSHRTYVILSFDLATEEFSIMQLP-------WSVFSGVLMVFRECLCLMD 361 ++W+A ++ + I+S DL TE + I+ +P WS L V R+CLC+ Sbjct: 106 TVNWLAFENVDNNGLFAIVSLDLETESYEIISIPDVNSDKYWS-----LEVLRDCLCIYV 160 Query: 362 GLGRDRELWMMKDYGIEISWVK 427 D ++W+MK+Y I+ SW K Sbjct: 161 TSDLDLDVWIMKEYAIKESWTK 182 >ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297318497|gb|EFH48919.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Length = 414 Score = 73.2 bits (178), Expect = 2e-11 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 28/166 (16%) Frame = +2 Query: 32 FGFDSVNNEYKVVRILR--------AGSTNGNEVEVHTLGGSDSWRKVIAP-----RLHL 172 FG+DSV+++YKVVR+++ G + EV+V +L +SW++V + RL Sbjct: 142 FGYDSVSDDYKVVRMVQFKIDSDDELGCSFPYEVKVFSLK-KNSWKRVESVSTSSIRLLF 200 Query: 173 TLPRYVIFR--------NCLHWVAMVESHSHRTYVILSFDLATEEFSIMQLPWSVFSGV- 325 ++++R N LHWV +I+ FDLA EEF I++ P +V +G Sbjct: 201 YFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFGIVRFPETVANGNV 260 Query: 326 -----LMVFRECLCLMDGLGRDR-ELWMMKDYGIEISWVKEFVLER 445 + V CLCLM ++ ++WMMK+Y + SW K F +++ Sbjct: 261 DIQMDISVLDGCLCLMCNYDQEYVDVWMMKEYNVRSSWTKVFTVQK 306 >ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa] Length = 396 Score = 72.4 bits (176), Expect = 4e-11 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 10/144 (6%) Frame = +2 Query: 32 FGFDSVNNEYKVVRILRAGSTNG----NEVEVHTLGGSDSWRKV--IAPRLHLTLPRYVI 193 FG+DSV ++YK+VRI + G +EV+V++L SWR++ + +H V Sbjct: 151 FGYDSVRDDYKLVRIAQFGGGGKRSFESEVKVYSLR-KQSWRRIGDMPYCVHYPGANGVF 209 Query: 194 FRNCLHWVAMVESHSHRTYVILSFDLATEEFSIMQLPW---SVFSGVLMVFRECLC-LMD 361 LHWV S+ ++++ DL E++ + P F L V R CLC L + Sbjct: 210 ANGALHWVVGENPESNVANIVVALDLGVEDYREVLQPEYKDKNFYIDLGVLRGCLCFLAN 269 Query: 362 GLGRDRELWMMKDYGIEISWVKEF 433 LG ++WMMK+YG++ SW K F Sbjct: 270 FLGERVDVWMMKEYGVKESWTKLF 293