BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007389
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322524.1| predicted protein [Populus trichocarpa] gi|2...    79   3e-13
ref|XP_003614205.1| F-box/kelch-repeat protein [Medicago truncat...    79   5e-13
ref|XP_003614204.1| F-box protein [Medicago truncatula] gi|35551...    75   4e-12
ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata sub...    73   2e-11
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    72   4e-11

>ref|XP_002322524.1| predicted protein [Populus trichocarpa] gi|222867154|gb|EEF04285.1|
           predicted protein [Populus trichocarpa]
          Length = 430

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 51/152 (33%), Positives = 90/152 (59%), Gaps = 13/152 (8%)
 Frame = +2

Query: 29  AFGFDSVNNEYKVVRILRAGSTNGN------EVEVHTLGGSDSWRKVIAPR-LHLTLPRY 187
           AFG DS N++Y+V+RI++      +      +  V++L  ++SWR+++AP  LH  + + 
Sbjct: 194 AFGHDSFNDDYRVLRIVQQNPGMPDPDKFILKAMVYSLK-ANSWREIVAPGYLHYIVSKE 252

Query: 188 -VIFRNCLHWVAMVESHSHRTYVILSFDLATEEFSIMQLP-----WSVFSGVLMVFRECL 349
            V+ R+  HW+ +++ H      I++FD+  EE+  + LP      S++   L V R+CL
Sbjct: 253 SVLVRDAFHWL-LIQGHG---LDIVAFDIQREEYCTVPLPNLETKSSLYYRNLGVLRQCL 308

Query: 350 CLMDGLGRDRELWMMKDYGIEISWVKEFVLER 445
            L      + E+W+MK+YG++ SWVK F+LE+
Sbjct: 309 SLASSSVHNVEIWVMKEYGMKDSWVKLFLLEK 340


>ref|XP_003614205.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|357487837|ref|XP_003614206.1| F-box/kelch-repeat
           protein [Medicago truncatula]
           gi|355515540|gb|AES97163.1| F-box/kelch-repeat protein
           [Medicago truncatula] gi|355515541|gb|AES97164.1|
           F-box/kelch-repeat protein [Medicago truncatula]
          Length = 351

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
 Frame = +2

Query: 29  AFGFDSVNNEYKVVRILRAGSTNGNEVEVHTLGGSDSWRKV--IAPRLHLTLPRYVIFRN 202
           +FG+D   + YK++ +  +  +  NE+ VHTLG ++ WR++       H+  P  +  ++
Sbjct: 145 SFGYDPFIDNYKIIVVYFSRESEKNEISVHTLG-TEYWRRIQDFPFSGHIGGPG-IFVKD 202

Query: 203 CLHWVAMVESHSHRTYVILSFDLATEEFSIMQLP-------WSVFSGVLMVFRECLCLMD 361
            ++W+A     ++  + I+S DL TE + I+ +P       WS     L V R+CLC+  
Sbjct: 203 TVNWLAFENVDNNGLFAIVSLDLETESYEIISIPDVNSDKYWS-----LEVLRDCLCIYV 257

Query: 362 GLGRDRELWMMKDYGIEISWVK 427
               D ++W+MK+YGI+ SW K
Sbjct: 258 TSDLDLDVWIMKEYGIKESWTK 279


>ref|XP_003614204.1| F-box protein [Medicago truncatula] gi|355515539|gb|AES97162.1|
           F-box protein [Medicago truncatula]
          Length = 254

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
 Frame = +2

Query: 29  AFGFDSVNNEYKVVRILRAGSTNGNEVEVHTLGGSDSWRKV--IAPRLHLTLPRYVIFRN 202
           +FG+D   + YK++ +  +  +  NE+ VHTLG ++ WR++       H+  P  +  ++
Sbjct: 48  SFGYDPFIDNYKLIVVYFSRESEKNEISVHTLG-TEYWRRIQDFPFSGHIGGPG-IFVKD 105

Query: 203 CLHWVAMVESHSHRTYVILSFDLATEEFSIMQLP-------WSVFSGVLMVFRECLCLMD 361
            ++W+A     ++  + I+S DL TE + I+ +P       WS     L V R+CLC+  
Sbjct: 106 TVNWLAFENVDNNGLFAIVSLDLETESYEIISIPDVNSDKYWS-----LEVLRDCLCIYV 160

Query: 362 GLGRDRELWMMKDYGIEISWVK 427
               D ++W+MK+Y I+ SW K
Sbjct: 161 TSDLDLDVWIMKEYAIKESWTK 182


>ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297318497|gb|EFH48919.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 28/166 (16%)
 Frame = +2

Query: 32  FGFDSVNNEYKVVRILR--------AGSTNGNEVEVHTLGGSDSWRKVIAP-----RLHL 172
           FG+DSV+++YKVVR+++         G +   EV+V +L   +SW++V +      RL  
Sbjct: 142 FGYDSVSDDYKVVRMVQFKIDSDDELGCSFPYEVKVFSLK-KNSWKRVESVSTSSIRLLF 200

Query: 173 TLPRYVIFR--------NCLHWVAMVESHSHRTYVILSFDLATEEFSIMQLPWSVFSGV- 325
               ++++R        N LHWV           +I+ FDLA EEF I++ P +V +G  
Sbjct: 201 YFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFGIVRFPETVANGNV 260

Query: 326 -----LMVFRECLCLMDGLGRDR-ELWMMKDYGIEISWVKEFVLER 445
                + V   CLCLM    ++  ++WMMK+Y +  SW K F +++
Sbjct: 261 DIQMDISVLDGCLCLMCNYDQEYVDVWMMKEYNVRSSWTKVFTVQK 306


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
 Frame = +2

Query: 32  FGFDSVNNEYKVVRILRAGSTNG----NEVEVHTLGGSDSWRKV--IAPRLHLTLPRYVI 193
           FG+DSV ++YK+VRI + G        +EV+V++L    SWR++  +   +H      V 
Sbjct: 151 FGYDSVRDDYKLVRIAQFGGGGKRSFESEVKVYSLR-KQSWRRIGDMPYCVHYPGANGVF 209

Query: 194 FRNCLHWVAMVESHSHRTYVILSFDLATEEFSIMQLPW---SVFSGVLMVFRECLC-LMD 361
               LHWV      S+   ++++ DL  E++  +  P      F   L V R CLC L +
Sbjct: 210 ANGALHWVVGENPESNVANIVVALDLGVEDYREVLQPEYKDKNFYIDLGVLRGCLCFLAN 269

Query: 362 GLGRDRELWMMKDYGIEISWVKEF 433
            LG   ++WMMK+YG++ SW K F
Sbjct: 270 FLGERVDVWMMKEYGVKESWTKLF 293