BLASTX nr result
ID: Coptis25_contig00007263
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00007263
(955 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002300388.1| predicted protein [Populus trichocarpa] gi|2... 202 4e-59
ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containi... 183 3e-56
ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containi... 183 3e-56
emb|CBI39775.3| unnamed protein product [Vitis vinifera] 199 6e-49
ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containi... 199 6e-49
>ref|XP_002300388.1| predicted protein [Populus trichocarpa] gi|222847646|gb|EEE85193.1|
predicted protein [Populus trichocarpa]
Length = 514
Score = 202 bits (515), Expect(2) = 4e-59
Identities = 94/118 (79%), Positives = 107/118 (90%)
Frame = -1
Query: 355 CNTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGI 176
CNTLIDMY+KCGCLE AR VFYEM+ERTVVSWSAMI G AMHGQAEEAL LFS+M ++G+
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGV 239
Query: 175 RPNGVTFIGLLHACSHMGLVDEGCGFFSSMTRDYEIIPQIEHYGCMVDLLSRSGLLQE 2
+PNGVTFIGLLHACSHMGL+DEG FF+SMT DY +IPQIEHYGC+VDL SR+GLL+E
Sbjct: 240 KPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEE 297
Score = 52.8 bits (125), Expect(2) = 4e-59
Identities = 27/63 (42%), Positives = 34/63 (53%)
Frame = -2
Query: 555 RSVRSWTAMIAGYVQCGNPKEAIRMFTDMEAAGGTPNEXXXXXXXXXXXXXXXXXXGRRV 376
++VRSWT+MI+G+VQCG P EAI +F +E PNE GR V
Sbjct: 105 KNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIV 164
Query: 375 HEY 367
HEY
Sbjct: 165 HEY 167
Score = 59.3 bits (142), Expect = 1e-06
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = -1
Query: 352 NTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGIR 173
N +I K G ++ A F M + V SW++MI G+ G+ EA+ LF K+ +R
Sbjct: 80 NIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVR 139
Query: 172 PNGVTFIGLLHACSHMGLVDEG 107
PN VT + +L AC+ +G +D G
Sbjct: 140 PNEVTVVSVLAACADLGDLDLG 161
>ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 183 bits (465), Expect(2) = 3e-56
Identities = 84/118 (71%), Positives = 101/118 (85%)
Frame = -1
Query: 355 CNTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGI 176
CNTLIDMY+KCGCLE A +F M+ERTVVSWSAMI G A HG+AE+AL LF+KM G+
Sbjct: 283 CNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGV 342
Query: 175 RPNGVTFIGLLHACSHMGLVDEGCGFFSSMTRDYEIIPQIEHYGCMVDLLSRSGLLQE 2
+PN VTFIG+LHACSHMG+V++G +F+SMTRDY I+P+IEHYGCMVDL SR+GLLQE
Sbjct: 343 KPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQE 400
Score = 62.4 bits (150), Expect(2) = 3e-56
Identities = 31/67 (46%), Positives = 39/67 (58%)
Frame = -2
Query: 558 ERSVRSWTAMIAGYVQCGNPKEAIRMFTDMEAAGGTPNEXXXXXXXXXXXXXXXXXXGRR 379
ER+VRSWT+MI GY QCG KEAI +F +ME AG PNE GRR
Sbjct: 207 ERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRR 266
Query: 378 VHEYLNQ 358
+H++ N+
Sbjct: 267 IHDFSNR 273
Score = 72.0 bits (175), Expect = 2e-10
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = -1
Query: 352 NTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGIR 173
N +I +K G E A +F EM ER V SW++MIGGYA G+++EA+ LF +M G+
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL 242
Query: 172 PNGVTFIGLLHACSHMGLVDEGCGFFSSMTRD-YEIIPQIEHYGCMVDLLSRSGLLQE 2
PN VT + +L AC+ MG + G R YE I ++D+ + G L++
Sbjct: 243 PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYE--KNIRVCNTLIDMYVKCGCLED 298
>ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 183 bits (465), Expect(2) = 3e-56
Identities = 84/118 (71%), Positives = 101/118 (85%)
Frame = -1
Query: 355 CNTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGI 176
CNTLIDMY+KCGCLE A +F M+ERTVVSWSAMI G A HG+AE+AL LF+KM G+
Sbjct: 283 CNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGV 342
Query: 175 RPNGVTFIGLLHACSHMGLVDEGCGFFSSMTRDYEIIPQIEHYGCMVDLLSRSGLLQE 2
+PN VTFIG+LHACSHMG+V++G +F+SMTRDY I+P+IEHYGCMVDL SR+GLLQE
Sbjct: 343 KPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQE 400
Score = 62.4 bits (150), Expect(2) = 3e-56
Identities = 31/67 (46%), Positives = 39/67 (58%)
Frame = -2
Query: 558 ERSVRSWTAMIAGYVQCGNPKEAIRMFTDMEAAGGTPNEXXXXXXXXXXXXXXXXXXGRR 379
ER+VRSWT+MI GY QCG KEAI +F +ME AG PNE GRR
Sbjct: 207 ERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRR 266
Query: 378 VHEYLNQ 358
+H++ N+
Sbjct: 267 IHDFSNR 273
Score = 72.0 bits (175), Expect = 2e-10
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = -1
Query: 352 NTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGIR 173
N +I +K G E A +F EM ER V SW++MIGGYA G+++EA+ LF +M G+
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL 242
Query: 172 PNGVTFIGLLHACSHMGLVDEGCGFFSSMTRD-YEIIPQIEHYGCMVDLLSRSGLLQE 2
PN VT + +L AC+ MG + G R YE I ++D+ + G L++
Sbjct: 243 PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYE--KNIRVCNTLIDMYVKCGCLED 298
>emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 199 bits (507), Expect = 6e-49
Identities = 96/117 (82%), Positives = 105/117 (89%)
Frame = -1
Query: 352 NTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGIR 173
NTLIDMY+KCGCLE A VF EM+ERTVVSWSAMIGG AMHG+AEEAL+LFS MS++GI
Sbjct: 266 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 325
Query: 172 PNGVTFIGLLHACSHMGLVDEGCGFFSSMTRDYEIIPQIEHYGCMVDLLSRSGLLQE 2
PNGVTFIGLLHACSHMGL+ EG FF+SMTRDY IIPQIEHYGCMVDLLSR+GLL E
Sbjct: 326 PNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 382
Score = 58.2 bits (139), Expect = 3e-06
Identities = 29/88 (32%), Positives = 49/88 (55%)
Frame = -1
Query: 265 SWSAMIGGYAMHGQAEEALKLFSKMSRIGIRPNGVTFIGLLHACSHMGLVDEGCGFFSSM 86
SW++MI GY G+A+EA+ LF+KM G++ N VT + +L AC+ +G +D G
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 253
Query: 85 TRDYEIIPQIEHYGCMVDLLSRSGLLQE 2
R + + ++D+ + G L+E
Sbjct: 254 NR-HGFKRNVRISNTLIDMYVKCGCLEE 280
Score = 57.8 bits (138), Expect = 4e-06
Identities = 33/77 (42%), Positives = 39/77 (50%)
Frame = -2
Query: 546 RSWTAMIAGYVQCGNPKEAIRMFTDMEAAGGTPNEXXXXXXXXXXXXXXXXXXGRRVHEY 367
RSWT+MIAGYVQCG KEAI +F ME AG NE G R+HEY
Sbjct: 193 RSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEY 252
Query: 366 LNQFVIL*LTCISNVVV 316
N+ ISN ++
Sbjct: 253 SNRHGFKRNVRISNTLI 269
>ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 199 bits (507), Expect = 6e-49
Identities = 96/117 (82%), Positives = 105/117 (89%)
Frame = -1
Query: 352 NTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGIR 173
NTLIDMY+KCGCLE A VF EM+ERTVVSWSAMIGG AMHG+AEEAL+LFS MS++GI
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 358
Query: 172 PNGVTFIGLLHACSHMGLVDEGCGFFSSMTRDYEIIPQIEHYGCMVDLLSRSGLLQE 2
PNGVTFIGLLHACSHMGL+ EG FF+SMTRDY IIPQIEHYGCMVDLLSR+GLL E
Sbjct: 359 PNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHE 415
Score = 74.7 bits (182), Expect = 3e-11
Identities = 42/117 (35%), Positives = 64/117 (54%)
Frame = -1
Query: 352 NTLIDMYIKCGCLEIARDVFYEMKERTVVSWSAMIGGYAMHGQAEEALKLFSKMSRIGIR 173
N +I IK G E A D+F M ER V SW++MI GY G+A+EA+ LF+KM G++
Sbjct: 198 NIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK 257
Query: 172 PNGVTFIGLLHACSHMGLVDEGCGFFSSMTRDYEIIPQIEHYGCMVDLLSRSGLLQE 2
N VT + +L AC+ +G +D G R + + ++D+ + G L+E
Sbjct: 258 CNEVTVVAVLAACADLGALDLGMRIHEYSNR-HGFKRNVRISNTLIDMYVKCGCLEE 313
Score = 63.5 bits (153), Expect = 7e-08
Identities = 36/81 (44%), Positives = 43/81 (53%)
Frame = -2
Query: 558 ERSVRSWTAMIAGYVQCGNPKEAIRMFTDMEAAGGTPNEXXXXXXXXXXXXXXXXXXGRR 379
ER+VRSWT+MIAGYVQCG KEAI +F ME AG NE G R
Sbjct: 222 ERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR 281
Query: 378 VHEYLNQFVIL*LTCISNVVV 316
+HEY N+ ISN ++
Sbjct: 282 IHEYSNRHGFKRNVRISNTLI 302