BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007253
         (3672 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...   982   0.0  
emb|CAN67377.1| hypothetical protein VITISV_017914 [Vitis vinifera]   982   0.0  
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein...   964   0.0  
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein...   959   0.0  
ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein...   938   0.0  

>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
            vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
            product [Vitis vinifera]
          Length = 1091

 Score =  982 bits (2539), Expect(2) = 0.0
 Identities = 490/635 (77%), Positives = 564/635 (88%), Gaps = 4/635 (0%)
 Frame = +3

Query: 51   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 230
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++QF+
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60

Query: 231  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 410
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 411  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 590
            SRID+HE STWVGKGQLLLAKGD+EQA  AFKIVLDG++DNVPALLGQACV+F+RGRYSD
Sbjct: 121  SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 591  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 770
            SL+LYKRAL+VYP CP AVR+GIGLC YKLGQF+KAR+AFQRVLQLDP+NVEALVALG+M
Sbjct: 181  SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240

Query: 771  DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 950
            DL  N    I+KGMEKMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 241  DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 951  GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1130
            G  KSHS+YNLARSYH+KGDYEKAG YYMASVKE ++PHDFVLPYYGLGQVQLKLGDFR 
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360

Query: 1131 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1310
            SLSNFEKVLEVYPEN E+L+ +GHIYVQLGQTEKA + LRKAT+IDPRDAQAFL+LGELL
Sbjct: 361  SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420

Query: 1311 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1490
            I+SD GAALDAFKTAR LLKK G + PIELLNNIGVL+F++G+FELA+QTFKEA+G+G+W
Sbjct: 421  ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480

Query: 1491 LDLVDGKFCSSAVDS----DQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1658
            L  +D K  S A D+      F DMQLF +L+E G  VEL W+KVT LFN ARLLEQL++
Sbjct: 481  LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540

Query: 1659 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1838
             + ASILYRLILFK+PDY DAYLRLAAIAK+RNNIQLSIEL+G+A+KVN+K P++L MLG
Sbjct: 541  TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600

Query: 1839 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLG 1943
             LELKNDDW+KAKETFR+A +ATDGKDSY+ LSLG
Sbjct: 601  DLELKNDDWVKAKETFRSASDATDGKDSYATLSLG 635



 Score =  560 bits (1442), Expect(2) = 0.0
 Identities = 301/465 (64%), Positives = 341/465 (73%), Gaps = 2/465 (0%)
 Frame = +1

Query: 2035 LSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVVLAEKGQF 2214
            LSLGNWNYFAA RSEK+  KLEATHLEKAKELYT+VLVQH ANLYAANGA VVLAEKG F
Sbjct: 632  LSLGNWNYFAAIRSEKRAPKLEATHLEKAKELYTRVLVQHNANLYAANGAGVVLAEKGHF 691

Query: 2215 DVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAVKMYQNCLRKFYYSTDTQ 2394
            DVSK+IFTQVQEAASGS+FVQMPDVWINLAHVYFAQG F  AVKMYQNCLRKFYY+TD+Q
Sbjct: 692  DVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQ 751

Query: 2395 VLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQKTKKTADE 2574
            VLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVA+QKFSASTLQKTK+TADE
Sbjct: 752  VLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADE 811

Query: 2575 VRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCXXXXXXXX 2754
            VRSTVAELKNAVR+FSQLSAASN H HGFDEKKIETHVGYCKHLL+AAKVHC        
Sbjct: 812  VRSTVAELKNAVRIFSQLSAASNLHFHGFDEKKIETHVGYCKHLLEAAKVHCEAAEREEL 871

Query: 2755 XXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXXXXXXSST 2934
                   +ARQV              K+QLE+RKQEDE+                  S+ 
Sbjct: 872  QNRHRVELARQVNLAEEARRKAEEQRKFQLERRKQEDELKRVMQQEQHFERVKEQWKSNN 931

Query: 2935 PASKRKDRSHADDEEGGHSENXXXXXXXXXXXXXXPQYEMDEVEPNTMYEXXXXXXXXXT 3114
              SKRK+RS  DD+EGG SE                +Y+ +E   + M +         T
Sbjct: 932  LNSKRKERSQIDDDEGGQSER-RRRKGGKRRKKDKSRYDSEEARADAM-DDQDEMEDEDT 989

Query: 3115 NLVNNHEKDKDQMNRQENDGEENTQDLLAAAGLEDSDVEDDMNDPPSTKYRRKRALSDSD 3294
            N+  NH +  +QMN Q++DGE++ QDLLAAAGLEDSD EDDM   PS+  RRKRA S+SD
Sbjct: 990  NM--NHRESTNQMNNQDDDGEDDAQDLLAAAGLEDSDAEDDMAG-PSSGNRRKRAWSESD 1046

Query: 3295 EDEPSDRKAESGQNRESLAE-PESDGEFR-EKEELHRDTYEEDED 3423
            EDEP D++ ES   RE+ AE  ESDGE + + ++ + D  E+DED
Sbjct: 1047 EDEPQDQRPESSPVRENSAEVQESDGEIKDDNDKPNGDAAEDDED 1091


>emb|CAN67377.1| hypothetical protein VITISV_017914 [Vitis vinifera]
          Length = 788

 Score =  982 bits (2539), Expect(2) = 0.0
 Identities = 490/635 (77%), Positives = 564/635 (88%), Gaps = 4/635 (0%)
 Frame = +3

Query: 51   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 230
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++QF+
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60

Query: 231  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 410
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 411  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 590
            SRID+HE STWVGKGQLLLAKGD+EQA  AFKIVLDG++DNVPALLGQACV+F+RGRYSD
Sbjct: 121  SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 591  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 770
            SL+LYKRAL+VYP CP AVR+GIGLC YKLGQF+KAR+AFQRVLQLDP+NVEALVALG+M
Sbjct: 181  SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240

Query: 771  DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 950
            DL  N    I+KGMEKMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 241  DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 951  GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1130
            G  KSHS+YNLARSYH+KGDYEKAG YYMASVKE ++PHDFVLPYYGLGQVQLKLGDFR 
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360

Query: 1131 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1310
            SLSNFEKVLEVYPEN E+L+ +GHIYVQLGQTEKA + LRKAT+IDPRDAQAFL+LGELL
Sbjct: 361  SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420

Query: 1311 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1490
            I+SD GAALDAFKTAR LLKK G + PIELLNNIGVL+F++G+FELA+QTFKEA+G+G+W
Sbjct: 421  ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480

Query: 1491 LDLVDGKFCSSAVDS----DQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1658
            L  +D K  S A D+      F DMQLF +L+E G  VEL W+KVT LFN ARLLEQL++
Sbjct: 481  LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540

Query: 1659 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1838
             + ASILYRLILFK+PDY DAYLRLAAIAK+RNNIQLSIEL+G+A+KVN+K P++L MLG
Sbjct: 541  TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600

Query: 1839 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLG 1943
             LELKNDDW+KAKETFR+A +ATDGKDSY+ LSLG
Sbjct: 601  DLELKNDDWVKAKETFRSASDATDGKDSYATLSLG 635



 Score =  187 bits (476), Expect(2) = 0.0
 Identities = 94/110 (85%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
 Frame = +1

Query: 2035 LSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVVLAEKGQF 2214
            LSLGNWNYFAA RSEK+  KLEATHLEKAKELYT+VLVQH ANLYAANGA VVLAEKG F
Sbjct: 632  LSLGNWNYFAAIRSEKRAPKLEATHLEKAKELYTRVLVQHNANLYAANGAGVVLAEKGHF 691

Query: 2215 DVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAVK-MYQNC 2361
            DVSK+IFTQVQEAASGS+FVQMPDVWINLAHVYFAQG F  AVK MY +C
Sbjct: 692  DVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMMYTHC 741


>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1088

 Score =  964 bits (2493), Expect(2) = 0.0
 Identities = 476/634 (75%), Positives = 556/634 (87%), Gaps = 3/634 (0%)
 Frame = +3

Query: 51   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 230
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++Q++
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60

Query: 231  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 410
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 411  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 590
            SRID+HEPSTWVGKGQLLLAKG++EQAS AFKIVLDG+ DNVPALLGQACV+F+RGR+SD
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180

Query: 591  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 770
            SLELYKR L+VYP+CP AVRLGIGLCRYKLGQF+KA+QAF+RVLQLDP+NVE+L+AL +M
Sbjct: 181  SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240

Query: 771  DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 950
            DL+ N+   I+ GM KMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 241  DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 951  GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1130
            G  KSHS+YNLARSYH+KGDY+KAG YYMASVKE+++PH+FV PYYGLGQVQ+KLGDF+ 
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360

Query: 1131 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1310
            +LSNFEKVLEVYP+N E+L+ +GHIYVQLGQT+K  D +RKAT+IDPRDAQAFLELGELL
Sbjct: 361  ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420

Query: 1311 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1490
            I SD GAALDAFKTA +L KK G + PIELLNNIGVL F++G+FELA+QTFKEALG+GVW
Sbjct: 421  ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480

Query: 1491 LDLVDGKFCSS---AVDSDQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDA 1661
            L  ++ +  SS   A  + QF DMQLF  L+  G  VE+ WDKVT LFN ARLLEQL+D+
Sbjct: 481  LSFINEENKSSIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYDS 540

Query: 1662 EKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGA 1841
              ASI YRLILFKYPDY DAYLRLAAIAK+RNNI LSIEL+ +A+KVN KCP+ALSMLG 
Sbjct: 541  GTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGE 600

Query: 1842 LELKNDDWLKAKETFRAAREATDGKDSYSALSLG 1943
            LELKNDDW+KAKET R A +ATDGKDSY+ LSLG
Sbjct: 601  LELKNDDWVKAKETLRTASDATDGKDSYATLSLG 634



 Score =  503 bits (1295), Expect(2) = 0.0
 Identities = 276/464 (59%), Positives = 325/464 (70%), Gaps = 2/464 (0%)
 Frame = +1

Query: 2035 LSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVVLAEKGQF 2214
            LSLGNWNYFAA R+EK+  KLEATHLEKAKEL T+VL+QH +NLYAANGAAVVLAEKG F
Sbjct: 631  LSLGNWNYFAAVRNEKRNPKLEATHLEKAKELCTRVLIQHSSNLYAANGAAVVLAEKGHF 690

Query: 2215 DVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAVKMYQNCLRKFYYSTDTQ 2394
            DVSK+IFTQVQEAASGS+FVQMPDVWINLAHVYFAQG FT AVKMYQNCLRKFY++TD+Q
Sbjct: 691  DVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQ 750

Query: 2395 VLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQKTKKTADE 2574
            +LLYLARTHYEAEQWQDC KTLLRAIHLAPSNYTLRFDAGVA+QKFSASTLQK K+TADE
Sbjct: 751  ILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADE 810

Query: 2575 VRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCXXXXXXXX 2754
            VR+TVAEL+NAVRVFSQLSAASN HIHGFDEKKI+THVGYC HLL AAKVH         
Sbjct: 811  VRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQ 870

Query: 2755 XXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXXXXXXSST 2934
                   +ARQV              K+Q+E+RKQEDE+                  SS+
Sbjct: 871  QVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQKQEEHFRRVKEQWKSSS 930

Query: 2935 PASKRKDRSHADDEEGGHSENXXXXXXXXXXXXXXP--QYEMDEVEPNTMYEXXXXXXXX 3108
              SKR++RS  DDEEGG  E                  +Y+ +E E + M E        
Sbjct: 931  -HSKRRERS--DDEEGGTGEKKRKKGGKRRKKDKHSKLRYDAEEPEDDLMDEQGMEDEEA 987

Query: 3109 XTNLVNNHEKDKDQMNRQENDGEENTQDLLAAAGLEDSDVEDDMNDPPSTKYRRKRALSD 3288
                +N  E+ + QMN   +D EEN Q LLAAAGLEDSD +++   P S+  RR++ALS+
Sbjct: 988  D---INYREEPQTQMN---DDAEENAQGLLAAAGLEDSDADEETAAPSSSIARRRQALSE 1041

Query: 3289 SDEDEPSDRKAESGQNRESLAEPESDGEFREKEELHRDTYEEDE 3420
            SD+DEP  ++  S   + S     SDGE R+ ++ + D   ++E
Sbjct: 1042 SDDDEPLLQRQSSPVRQNSADMQLSDGEIRDGDKTNGDDGNDEE 1085


>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1086

 Score =  959 bits (2479), Expect(2) = 0.0
 Identities = 476/634 (75%), Positives = 557/634 (87%), Gaps = 3/634 (0%)
 Frame = +3

Query: 51   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 230
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWL+IAREYFKQG ++QF+
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60

Query: 231  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 410
            QILEEGSSPEID+YYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 411  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 590
            SRID+HEPSTWVGKGQLLLAKG++EQAS AFKIVLDG++DNVPALLGQACV+F+RGRYSD
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 591  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 770
            SLELYKRAL VYP CP AVRLGIGLCRYKLGQF+KA+QAF+R   LDP+NVEALVAL +M
Sbjct: 181  SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237

Query: 771  DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 950
            DL+ N+   I+ GM KMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 238  DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297

Query: 951  GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1130
            G  KSHS+YNLARSYH+KGDY+KAG YYMASVKE+++PH+FV PYYGLGQVQ+KLGDF+ 
Sbjct: 298  GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357

Query: 1131 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1310
            +LSNFEKVLEVYP+N E+L+ +GHIYVQLGQT+K  D +RKAT+IDPRDAQAFLELGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417

Query: 1311 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1490
            I SD GAALDAFKTAR+L KK G + PIELLNNIGVL F++G+FELA+QTFKEALG+GVW
Sbjct: 418  ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477

Query: 1491 LDLVDGKFCSS---AVDSDQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDA 1661
            L  ++ +  SS   A  + QF DM+LF  L+  G  VE+ WDKVT LFN ARLLEQL+D+
Sbjct: 478  LSFINEEKKSSIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNDS 537

Query: 1662 EKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGA 1841
              ASILYRL+LFKYPDY DAYLRLAAIAK+RNNI LSIEL+ +A+KVN KCP+ALSMLG 
Sbjct: 538  GTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGE 597

Query: 1842 LELKNDDWLKAKETFRAAREATDGKDSYSALSLG 1943
            LELKNDDW+KAKET RAA +AT+GKDSY++LSLG
Sbjct: 598  LELKNDDWVKAKETLRAASDATEGKDSYASLSLG 631



 Score =  507 bits (1305), Expect(2) = 0.0
 Identities = 277/466 (59%), Positives = 326/466 (69%), Gaps = 3/466 (0%)
 Frame = +1

Query: 2032 ALSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVVLAEKGQ 2211
            +LSLGNWNYFAA R+EK+  KLEATHLEKAKELYT+VL+QH +NLYAANGAAVVLAEKG 
Sbjct: 627  SLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEKGH 686

Query: 2212 FDVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAVKMYQNCLRKFYYSTDT 2391
            FDVSK+IFTQVQEAASGS+FVQMPDVWINLAHVYFAQG FT AVKMYQNCLRKFY++TD+
Sbjct: 687  FDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDS 746

Query: 2392 QVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQKTKKTAD 2571
            Q+LLYLARTHYEAEQWQDC KTLLRAIHLAPSNYTLRFDAGVA+QKFSASTLQK K+TAD
Sbjct: 747  QILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTAD 806

Query: 2572 EVRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCXXXXXXX 2751
            EVR+TVAEL+NAVRVFSQLSAASN HIHGFDEKKI+THVGYC HLL AAKVH        
Sbjct: 807  EVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREE 866

Query: 2752 XXXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXXXXXXSS 2931
                    +ARQV              K+Q+E+RKQEDE+                  SS
Sbjct: 867  QQVRQRQELARQVAFAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSS 926

Query: 2932 TPASKRKDRSHADDEEG---GHSENXXXXXXXXXXXXXXPQYEMDEVEPNTMYEXXXXXX 3102
            +  SKR++RS  DDEEG   G  +                +Y+ +E E + M E      
Sbjct: 927  S-HSKRRERS--DDEEGGGTGEKKRKKGGKRRKKDKHSKSRYDTEEPENDMMDEQEMEDE 983

Query: 3103 XXXTNLVNNHEKDKDQMNRQENDGEENTQDLLAAAGLEDSDVEDDMNDPPSTKYRRKRAL 3282
                  +N  E+ + QMN   +D EEN Q LLAAAGLEDSD +++   P S+  RR++AL
Sbjct: 984  EAD---INYREEPQTQMN---DDAEENAQGLLAAAGLEDSDADEEAPAPSSSIARRRQAL 1037

Query: 3283 SDSDEDEPSDRKAESGQNRESLAEPESDGEFREKEELHRDTYEEDE 3420
            S+SD+DEP  ++  S     S     SDGE R+ ++ + D   E+E
Sbjct: 1038 SESDDDEPLIQRQSSPARENSADMQLSDGEIRDGDKTNGDDGSEEE 1083


>ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis
            sativus]
          Length = 1074

 Score =  938 bits (2425), Expect(2) = 0.0
 Identities = 462/635 (72%), Positives = 549/635 (86%), Gaps = 4/635 (0%)
 Frame = +3

Query: 51   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 230
            M CVYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG +EQF+
Sbjct: 1    MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60

Query: 231  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 410
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 411  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 590
            SRID+HEPSTWVGKGQLLL KG++EQA  AFKIVLDG++DNVPALLGQACV+F+RG YS+
Sbjct: 121  SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180

Query: 591  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 770
            SLELYKRAL+VYP CP AVRLGIGLCRY+L Q+ KA+QAF+R   LDP+NVEALV L ++
Sbjct: 181  SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237

Query: 771  DLQINKGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 950
            DL  N+   I+ GMEKMQ AFEIYP+CA+AL YLANHFFFTG+H  VE+LT+TALA++  
Sbjct: 238  DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297

Query: 951  GLQKSHSFYNLARSYHTKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1130
            G  KSHSFYNLARSYH+KGDYEKAG YYMAS KE ++P +FV PYYGLGQVQLK+GD R 
Sbjct: 298  GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357

Query: 1131 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1310
            +LSNFEKVLEVYP+N E+L+V+GHIYVQLGQ EKA + LRKAT+IDPRDAQAFL+LGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417

Query: 1311 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1490
            IS+D  AALDAFKTA  LLKK G + PIE+LNN+GVLHF++ +FELA++ FKEALG+G+W
Sbjct: 418  ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477

Query: 1491 LDLVDGKFCSSAVDSD----QFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1658
            LD +DGK    A+++     Q+ D++LF +L+  G  + L W KVT+LFN ARLLEQLH 
Sbjct: 478  LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 537

Query: 1659 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1838
             E +S+LYRLILFKYPDY DAYLRLA+IAK+RN +QLSIEL+ +A+KVN+KC +ALSMLG
Sbjct: 538  IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 597

Query: 1839 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLG 1943
             LELKNDDW++AKETFRAA EATDGKDSY+ LSLG
Sbjct: 598  ELELKNDDWVRAKETFRAAGEATDGKDSYATLSLG 632



 Score =  511 bits (1315), Expect(2) = 0.0
 Identities = 281/453 (62%), Positives = 318/453 (70%), Gaps = 5/453 (1%)
 Frame = +1

Query: 2035 LSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVVLAEKGQF 2214
            LSLGNWNYFAA R+EK+  KLEATHLEK+KELYT+VLVQHPANLYAANGA V+LAEKGQF
Sbjct: 629  LSLGNWNYFAALRNEKRNPKLEATHLEKSKELYTRVLVQHPANLYAANGAGVILAEKGQF 688

Query: 2215 DVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAVKMYQNCLRKFYYSTDTQ 2394
            DVSK+IFTQVQEAASG+IFVQMPDVWINLAHVYFAQG F+ AVKMYQNCLRKFYY+TD Q
Sbjct: 689  DVSKDIFTQVQEAASGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQ 748

Query: 2395 VLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQKTKKTADE 2574
            +LLYLART+YEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVA+QKFSASTLQKTK+TADE
Sbjct: 749  ILLYLARTYYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADE 808

Query: 2575 VRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCXXXXXXXX 2754
            VRSTVAEL+NAVRVFSQLSAASN H HGFDEKKI+THVGYCKHLL+AA VH         
Sbjct: 809  VRSTVAELENAVRVFSQLSAASNLHFHGFDEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQ 868

Query: 2755 XXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXXXXXXSST 2934
                   +ARQV              K+QLE+RK EDE                   S T
Sbjct: 869  QIRQRQELARQVALAEDARRKADEQRKFQLERRKLEDEEKRMMQQEQHFKRVKEQWKSIT 928

Query: 2935 PASKRKDRSHADDEEGGHSE--NXXXXXXXXXXXXXXPQYEMDEVEPNTMYEXXXXXXXX 3108
            PA KR++RS  DD+E G+SE                   YE +E + + M +        
Sbjct: 929  PA-KRRERSEIDDDEAGNSEKRRRKGGKRRKKDRKGKSHYETEEADNDMMDDQELY---- 983

Query: 3109 XTNLVNN--HEKDKDQMNRQENDGEENTQDLLAAAGLEDSDVEDDMNDPPSTKYRRKRAL 3282
              N  NN  + + + Q+N Q +D E N QD LA AGLEDSD ED+   P S   RR+   
Sbjct: 984  --NEDNNISYRESRSQVNDQGDDFEGNDQDALAEAGLEDSDAEDEAGAPSSNAARRRATW 1041

Query: 3283 SDSDEDEPSDRKAESGQNRESLAEPE-SDGEFR 3378
            SDS+EDEP D + ES   RE+ A  E SDGE R
Sbjct: 1042 SDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1074