BLASTX nr result
ID: Coptis25_contig00007229
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00007229 (2008 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus co... 424 e-116 ref|XP_002271987.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vit... 412 e-112 emb|CBI34215.3| unnamed protein product [Vitis vinifera] 405 e-110 ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|2... 405 e-110 ref|XP_004156447.1| PREDICTED: 5'-3' exoribonuclease 4-like, par... 387 e-105 >ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus communis] gi|223548213|gb|EEF49704.1| 5'->3' exoribonuclease, putative [Ricinus communis] Length = 964 Score = 424 bits (1089), Expect = e-116 Identities = 218/415 (52%), Positives = 272/415 (65%), Gaps = 8/415 (1%) Frame = +3 Query: 777 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956 FYPYHYAPFASDLKGL DLEITFFLGEPFKPFDQLMGTLPA+SSNALPE YR LM D SS Sbjct: 497 FYPYHYAPFASDLKGLADLEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDSSS 556 Query: 957 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136 P+S F+P DFEIDMNGKRFAWQG+AKLPFI+ R RNSVM D+ Sbjct: 557 PISRFFPLDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLESTLTEEERLRNSVMLDL 616 Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316 LYVH HP+A ++ Y + LP +R P IDTN+S GMNGYLWLSERN + SP Sbjct: 617 LYVHPAHPMAAEVIAHYQGFNSLPQYQRKPWAIDTNASAGMNGYLWLSERNMWRSTIASP 676 Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496 + G DIE+N VLN +YLNP +H HIPEPP GV MPEK+L+ +DIKPFPMLWHED+ RR Sbjct: 677 VNGFPDIEHNQVLNITYLNPINHRHIPEPPNGVVMPEKILKPLDIKPFPMLWHEDHGGRR 736 Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRNTSGLLNHPPYSHVVSNKT----R 1658 QQ R RPQV AI+G LL E+AHRL+KN +++ N ++S L Y ++ N T R Sbjct: 737 QQGRERPQVARAIAGPLLGEAAHRLVKNTLNIRPNGSSSKFLEQQTYRNIPGNSTFNRPR 796 Query: 1659 PAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQTAGRQDSGVQNTVPIRDS 1838 PAGP GYERG+ D ++++GHHN+ + + S SP + ++ R + Sbjct: 797 PAGPSGYERGYSNDPNYYYGHHNYQQGL-MSNPRSPLFSNGVSSNRHNF----------- 844 Query: 1839 FQDGNRIQKRVPHQEYSHNLQTGMSNLTIRDSFQDGNR--IQKRVPHQEYSHNLQ 1997 R Q RV + E +L+TGMS LT+ ++ + + +R + YS +LQ Sbjct: 845 -----RTQDRVQYHEQYRDLKTGMSALTMEENVKSRPPAVMSQRTQNTGYSSSLQ 894 >ref|XP_002271987.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera] Length = 950 Score = 412 bits (1060), Expect = e-112 Identities = 217/391 (55%), Positives = 261/391 (66%), Gaps = 6/391 (1%) Frame = +3 Query: 777 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956 +YP+HYAPFASDLK L DLEITFFLGEPFKPFDQLMGTLPA+S+++LPE+YR LM D SS Sbjct: 485 YYPFHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASASSLPENYRKLMTDQSS 544 Query: 957 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136 P+ FYP+DFEIDMNGKR+AWQGVAKLPFI+ + RNSVMFD+ Sbjct: 545 PILDFYPSDFEIDMNGKRYAWQGVAKLPFIDEEKLLAETKKLEVTLTVEEQVRNSVMFDL 604 Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316 LYVH HPLA QI Y Y P + R+ ID N+S GMNGYLWL ERNG+ FPS Sbjct: 605 LYVHAVHPLATQIIYYYHFYQSSPPLARVIWPIDINASGGMNGYLWLCERNGWRSEFPSS 664 Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496 I GL++IE+N V N +Y+NP H HIPEPP GV MPEKVLR DIKP P+LWHEDN RR Sbjct: 665 ISGLQNIEHNQVFNVTYVNPPHHKHIPEPPMGVVMPEKVLRPFDIKPLPVLWHEDNGGRR 724 Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRNTSGLLNHPPY----SHVVSNKTR 1658 QQ R RPQV AISG LL E+AHRLLKN +++ N +SG+L PY S+ V N+ R Sbjct: 725 QQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYRNMPSNYVVNRPR 784 Query: 1659 PAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQTAGRQDSGVQNTVPIRDS 1838 PAGP GYE+GF D+++++GH+++PR P N Q RQ+ VQ+ R + Sbjct: 785 PAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNMQ-GNRQNFRVQD----RST 839 Query: 1839 FQDGNRIQKRVPHQEYSHNLQTGMSNLTIRD 1931 FQD R S GMS LTI + Sbjct: 840 FQDQYR---------NSRTGIMGMSTLTIEE 861 >emb|CBI34215.3| unnamed protein product [Vitis vinifera] Length = 1083 Score = 405 bits (1042), Expect = e-110 Identities = 201/342 (58%), Positives = 241/342 (70%), Gaps = 6/342 (1%) Frame = +3 Query: 777 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956 +YP+HYAPFASDLK L DLEITFFLGEPFKPFDQLMGTLPA+S+++LPE+YR LM D SS Sbjct: 727 YYPFHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASASSLPENYRKLMTDQSS 786 Query: 957 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136 P+ FYP+DFEIDMNGKR+AWQGVAKLPFI+ + RNSVMFD+ Sbjct: 787 PILDFYPSDFEIDMNGKRYAWQGVAKLPFIDEEKLLAETKKLEVTLTVEEQVRNSVMFDL 846 Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316 LYVH HPLA QI Y Y P + R+ ID N+S GMNGYLWL ERNG+ FPS Sbjct: 847 LYVHAVHPLATQIIYYYHFYQSSPPLARVIWPIDINASGGMNGYLWLCERNGWRSEFPSS 906 Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496 I GL++IE+N V N +Y+NP H HIPEPP GV MPEKVLR DIKP P+LWHEDN RR Sbjct: 907 ISGLQNIEHNQVFNVTYVNPPHHKHIPEPPMGVVMPEKVLRPFDIKPLPVLWHEDNGGRR 966 Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRNTSGLLNHPPY----SHVVSNKTR 1658 QQ R RPQV AISG LL E+AHRLLKN +++ N +SG+L PY S+ V N+ R Sbjct: 967 QQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYRNMPSNYVVNRPR 1026 Query: 1659 PAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQ 1784 PAGP GYE+GF D+++++GH+++PR P N Q Sbjct: 1027 PAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNMQ 1068 >ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|222838231|gb|EEE76596.1| predicted protein [Populus trichocarpa] Length = 948 Score = 405 bits (1040), Expect = e-110 Identities = 210/408 (51%), Positives = 265/408 (64%), Gaps = 2/408 (0%) Frame = +3 Query: 777 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956 FYPYHYAPFASD+K L ++EITFFLGEPFKPFDQLMGTLPA+SSNALPE YR LM DPSS Sbjct: 497 FYPYHYAPFASDIKDLDEMEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDPSS 556 Query: 957 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136 P+ F+P+DFEIDMNGKRFAWQG+AKLPFI+ + RNSVM D+ Sbjct: 557 PIHQFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLERTLMEEEQVRNSVMRDL 616 Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316 LYVH HPL+ Q+ Y Y+LPV ER+ L IDT +S GMNGYLWLSERN + PSP Sbjct: 617 LYVHPVHPLSQQVISYYHHNYRLPVSERIALKIDTRASGGMNGYLWLSERNVWRSVVPSP 676 Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496 I GL +E N VLN +YL P SH HIPEPP+GV MPEK+L+ DIK FP LWHEDN RR Sbjct: 677 INGLPTLEYNQVLNITYLTPSSHRHIPEPPEGVVMPEKILKPTDIKLFPTLWHEDN-GRR 735 Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISVNRNTSGLLNHPPYSHVVSNKTRPAGPPG 1676 QQ R RPQV A++G +L E+AHRL+KN +++ N S + + N+ RPAGP G Sbjct: 736 QQGRERPQVPRAVAGPVLGEAAHRLVKNTLNIKPNGSSSRGNYTF-----NRPRPAGPAG 790 Query: 1677 YERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQTAGRQDSGVQNTVPIRDSFQDGNR 1856 Y RG+ +D ++H+ H+N+ + L +GVQ + +R Sbjct: 791 YGRGYGDDPNYHYAHYNNQQG----------LMSNHMYPVSSNGVQGN-------RHNSR 833 Query: 1857 IQKRVPHQEYSHNLQTGMSNLTIRDSFQDGNR--IQKRVPHQEYSHNL 1994 Q RV + + H+L TG+S LT+ ++F+ I R+P+ Y+ NL Sbjct: 834 PQDRVQYHQQYHDLSTGVSALTVEENFRSRAPAVISPRIPNPGYTTNL 881 >ref|XP_004156447.1| PREDICTED: 5'-3' exoribonuclease 4-like, partial [Cucumis sativus] Length = 685 Score = 387 bits (993), Expect = e-105 Identities = 207/396 (52%), Positives = 256/396 (64%), Gaps = 7/396 (1%) Frame = +3 Query: 777 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956 +YPYHY+PFASDLK L DLEITFF+GEPFKPFDQLMGTLPA+SS ALPE YR+LM DPSS Sbjct: 217 YYPYHYSPFASDLKNLADLEITFFIGEPFKPFDQLMGTLPAASSTALPEKYRNLMTDPSS 276 Query: 957 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136 P+ FYP+DFEIDMNGKRF WQGVAKLPFI+ + RNSVM DM Sbjct: 277 PILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLEWSLTDEEKNRNSVMLDM 336 Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316 LY H HPL+ QI Y QLP R IDTN+S GMNGYLWL ERN SP Sbjct: 337 LYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNASGGMNGYLWLCERNVIRNVVQSP 396 Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496 I L DI+ N VLN +YLNP H HIPEPPKG +P+KVL +DIKPFP LWHEDNSSRR Sbjct: 397 INSLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPKKVLSSLDIKPFPTLWHEDNSSRR 456 Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRNTSGLLNHPPYSH-----VVSNKT 1655 R RP+V GAI+G LL E+AHRL+KN +++ N ++SG PYS + ++ Sbjct: 457 SHGRDRPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGSSSGFFEQ-PYSRNFPGPPMFSRP 515 Query: 1656 RPAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQTAGRQDSGVQNTVPIRD 1835 R GP G+E G+ ED ++++GH+N+ + AS P + D R Sbjct: 516 RQVGPSGFETGYGEDPNYNYGHYNNYQ----GASSRPRYSHSSNGMPGD---------RQ 562 Query: 1836 SFQDGNRIQKRVPHQEYSHNLQTGMSNLTIRDSFQD 1943 S + +R+Q H++Y +NL+TGMS LTI ++ ++ Sbjct: 563 SSRGNDRVQL---HEQY-NNLRTGMSALTIEENVRN 594