BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007229
         (2008 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus co...   424   e-116
ref|XP_002271987.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vit...   412   e-112
emb|CBI34215.3| unnamed protein product [Vitis vinifera]              405   e-110
ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|2...   405   e-110
ref|XP_004156447.1| PREDICTED: 5'-3' exoribonuclease 4-like, par...   387   e-105

>ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223548213|gb|EEF49704.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 964

 Score =  424 bits (1089), Expect = e-116
 Identities = 218/415 (52%), Positives = 272/415 (65%), Gaps = 8/415 (1%)
 Frame = +3

Query: 777  FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956
            FYPYHYAPFASDLKGL DLEITFFLGEPFKPFDQLMGTLPA+SSNALPE YR LM D SS
Sbjct: 497  FYPYHYAPFASDLKGLADLEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDSSS 556

Query: 957  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136
            P+S F+P DFEIDMNGKRFAWQG+AKLPFI+                   R RNSVM D+
Sbjct: 557  PISRFFPLDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLESTLTEEERLRNSVMLDL 616

Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316
            LYVH  HP+A ++   Y  +  LP  +R P  IDTN+S GMNGYLWLSERN +     SP
Sbjct: 617  LYVHPAHPMAAEVIAHYQGFNSLPQYQRKPWAIDTNASAGMNGYLWLSERNMWRSTIASP 676

Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496
            + G  DIE+N VLN +YLNP +H HIPEPP GV MPEK+L+ +DIKPFPMLWHED+  RR
Sbjct: 677  VNGFPDIEHNQVLNITYLNPINHRHIPEPPNGVVMPEKILKPLDIKPFPMLWHEDHGGRR 736

Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRNTSGLLNHPPYSHVVSNKT----R 1658
            QQ R RPQV  AI+G LL E+AHRL+KN +++  N ++S  L    Y ++  N T    R
Sbjct: 737  QQGRERPQVARAIAGPLLGEAAHRLVKNTLNIRPNGSSSKFLEQQTYRNIPGNSTFNRPR 796

Query: 1659 PAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQTAGRQDSGVQNTVPIRDS 1838
            PAGP GYERG+  D ++++GHHN+ + +  S   SP  +   ++ R +            
Sbjct: 797  PAGPSGYERGYSNDPNYYYGHHNYQQGL-MSNPRSPLFSNGVSSNRHNF----------- 844

Query: 1839 FQDGNRIQKRVPHQEYSHNLQTGMSNLTIRDSFQDGNR--IQKRVPHQEYSHNLQ 1997
                 R Q RV + E   +L+TGMS LT+ ++ +      + +R  +  YS +LQ
Sbjct: 845  -----RTQDRVQYHEQYRDLKTGMSALTMEENVKSRPPAVMSQRTQNTGYSSSLQ 894


>ref|XP_002271987.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera]
          Length = 950

 Score =  412 bits (1060), Expect = e-112
 Identities = 217/391 (55%), Positives = 261/391 (66%), Gaps = 6/391 (1%)
 Frame = +3

Query: 777  FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956
            +YP+HYAPFASDLK L DLEITFFLGEPFKPFDQLMGTLPA+S+++LPE+YR LM D SS
Sbjct: 485  YYPFHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASASSLPENYRKLMTDQSS 544

Query: 957  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136
            P+  FYP+DFEIDMNGKR+AWQGVAKLPFI+                   + RNSVMFD+
Sbjct: 545  PILDFYPSDFEIDMNGKRYAWQGVAKLPFIDEEKLLAETKKLEVTLTVEEQVRNSVMFDL 604

Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316
            LYVH  HPLA QI   Y  Y   P + R+   ID N+S GMNGYLWL ERNG+   FPS 
Sbjct: 605  LYVHAVHPLATQIIYYYHFYQSSPPLARVIWPIDINASGGMNGYLWLCERNGWRSEFPSS 664

Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496
            I GL++IE+N V N +Y+NP  H HIPEPP GV MPEKVLR  DIKP P+LWHEDN  RR
Sbjct: 665  ISGLQNIEHNQVFNVTYVNPPHHKHIPEPPMGVVMPEKVLRPFDIKPLPVLWHEDNGGRR 724

Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRNTSGLLNHPPY----SHVVSNKTR 1658
            QQ R RPQV  AISG LL E+AHRLLKN +++  N  +SG+L   PY    S+ V N+ R
Sbjct: 725  QQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYRNMPSNYVVNRPR 784

Query: 1659 PAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQTAGRQDSGVQNTVPIRDS 1838
            PAGP GYE+GF  D+++++GH+++PR         P  N  Q   RQ+  VQ+    R +
Sbjct: 785  PAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNMQ-GNRQNFRVQD----RST 839

Query: 1839 FQDGNRIQKRVPHQEYSHNLQTGMSNLTIRD 1931
            FQD  R          S     GMS LTI +
Sbjct: 840  FQDQYR---------NSRTGIMGMSTLTIEE 861


>emb|CBI34215.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  405 bits (1042), Expect = e-110
 Identities = 201/342 (58%), Positives = 241/342 (70%), Gaps = 6/342 (1%)
 Frame = +3

Query: 777  FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956
            +YP+HYAPFASDLK L DLEITFFLGEPFKPFDQLMGTLPA+S+++LPE+YR LM D SS
Sbjct: 727  YYPFHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASASSLPENYRKLMTDQSS 786

Query: 957  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136
            P+  FYP+DFEIDMNGKR+AWQGVAKLPFI+                   + RNSVMFD+
Sbjct: 787  PILDFYPSDFEIDMNGKRYAWQGVAKLPFIDEEKLLAETKKLEVTLTVEEQVRNSVMFDL 846

Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316
            LYVH  HPLA QI   Y  Y   P + R+   ID N+S GMNGYLWL ERNG+   FPS 
Sbjct: 847  LYVHAVHPLATQIIYYYHFYQSSPPLARVIWPIDINASGGMNGYLWLCERNGWRSEFPSS 906

Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496
            I GL++IE+N V N +Y+NP  H HIPEPP GV MPEKVLR  DIKP P+LWHEDN  RR
Sbjct: 907  ISGLQNIEHNQVFNVTYVNPPHHKHIPEPPMGVVMPEKVLRPFDIKPLPVLWHEDNGGRR 966

Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRNTSGLLNHPPY----SHVVSNKTR 1658
            QQ R RPQV  AISG LL E+AHRLLKN +++  N  +SG+L   PY    S+ V N+ R
Sbjct: 967  QQGRERPQVPRAISGPLLGEAAHRLLKNTLNIKPNNTSSGMLLQTPYRNMPSNYVVNRPR 1026

Query: 1659 PAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQ 1784
            PAGP GYE+GF  D+++++GH+++PR         P  N  Q
Sbjct: 1027 PAGPSGYEKGFNGDSNYYYGHYDNPRGALSIPRFPPSPNNMQ 1068


>ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|222838231|gb|EEE76596.1|
            predicted protein [Populus trichocarpa]
          Length = 948

 Score =  405 bits (1040), Expect = e-110
 Identities = 210/408 (51%), Positives = 265/408 (64%), Gaps = 2/408 (0%)
 Frame = +3

Query: 777  FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956
            FYPYHYAPFASD+K L ++EITFFLGEPFKPFDQLMGTLPA+SSNALPE YR LM DPSS
Sbjct: 497  FYPYHYAPFASDIKDLDEMEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDPSS 556

Query: 957  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136
            P+  F+P+DFEIDMNGKRFAWQG+AKLPFI+                   + RNSVM D+
Sbjct: 557  PIHQFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLERTLMEEEQVRNSVMRDL 616

Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316
            LYVH  HPL+ Q+   Y   Y+LPV ER+ L IDT +S GMNGYLWLSERN +    PSP
Sbjct: 617  LYVHPVHPLSQQVISYYHHNYRLPVSERIALKIDTRASGGMNGYLWLSERNVWRSVVPSP 676

Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496
            I GL  +E N VLN +YL P SH HIPEPP+GV MPEK+L+  DIK FP LWHEDN  RR
Sbjct: 677  INGLPTLEYNQVLNITYLTPSSHRHIPEPPEGVVMPEKILKPTDIKLFPTLWHEDN-GRR 735

Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISVNRNTSGLLNHPPYSHVVSNKTRPAGPPG 1676
            QQ R RPQV  A++G +L E+AHRL+KN +++  N S    +  +     N+ RPAGP G
Sbjct: 736  QQGRERPQVPRAVAGPVLGEAAHRLVKNTLNIKPNGSSSRGNYTF-----NRPRPAGPAG 790

Query: 1677 YERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQTAGRQDSGVQNTVPIRDSFQDGNR 1856
            Y RG+ +D ++H+ H+N+ +           L          +GVQ         +  +R
Sbjct: 791  YGRGYGDDPNYHYAHYNNQQG----------LMSNHMYPVSSNGVQGN-------RHNSR 833

Query: 1857 IQKRVPHQEYSHNLQTGMSNLTIRDSFQDGNR--IQKRVPHQEYSHNL 1994
             Q RV + +  H+L TG+S LT+ ++F+      I  R+P+  Y+ NL
Sbjct: 834  PQDRVQYHQQYHDLSTGVSALTVEENFRSRAPAVISPRIPNPGYTTNL 881


>ref|XP_004156447.1| PREDICTED: 5'-3' exoribonuclease 4-like, partial [Cucumis sativus]
          Length = 685

 Score =  387 bits (993), Expect = e-105
 Identities = 207/396 (52%), Positives = 256/396 (64%), Gaps = 7/396 (1%)
 Frame = +3

Query: 777  FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 956
            +YPYHY+PFASDLK L DLEITFF+GEPFKPFDQLMGTLPA+SS ALPE YR+LM DPSS
Sbjct: 217  YYPYHYSPFASDLKNLADLEITFFIGEPFKPFDQLMGTLPAASSTALPEKYRNLMTDPSS 276

Query: 957  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXXRARNSVMFDM 1136
            P+  FYP+DFEIDMNGKRF WQGVAKLPFI+                   + RNSVM DM
Sbjct: 277  PILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLEWSLTDEEKNRNSVMLDM 336

Query: 1137 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNSSDGMNGYLWLSERNGYIQAFPSP 1316
            LY H  HPL+ QI   Y    QLP   R    IDTN+S GMNGYLWL ERN       SP
Sbjct: 337  LYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNASGGMNGYLWLCERNVIRNVVQSP 396

Query: 1317 IKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPEKVLRRIDIKPFPMLWHEDNSSRR 1496
            I  L DI+ N VLN +YLNP  H HIPEPPKG  +P+KVL  +DIKPFP LWHEDNSSRR
Sbjct: 397  INSLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPKKVLSSLDIKPFPTLWHEDNSSRR 456

Query: 1497 QQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRNTSGLLNHPPYSH-----VVSNKT 1655
               R RP+V GAI+G LL E+AHRL+KN +++  N ++SG     PYS       + ++ 
Sbjct: 457  SHGRDRPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGSSSGFFEQ-PYSRNFPGPPMFSRP 515

Query: 1656 RPAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPFLNERQTAGRQDSGVQNTVPIRD 1835
            R  GP G+E G+ ED ++++GH+N+ +     AS  P  +        D         R 
Sbjct: 516  RQVGPSGFETGYGEDPNYNYGHYNNYQ----GASSRPRYSHSSNGMPGD---------RQ 562

Query: 1836 SFQDGNRIQKRVPHQEYSHNLQTGMSNLTIRDSFQD 1943
            S +  +R+Q    H++Y +NL+TGMS LTI ++ ++
Sbjct: 563  SSRGNDRVQL---HEQY-NNLRTGMSALTIEENVRN 594