BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007200
         (609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|2...   216   3e-54
ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi...   215   4e-54
ref|NP_194257.1| pentatricopeptide repeat-containing protein [Ar...   213   2e-53
ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arab...   211   8e-53
ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   210   2e-52

>ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|222869403|gb|EEF06534.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score =  216 bits (550), Expect = 3e-54
 Identities = 106/157 (67%), Positives = 118/157 (75%)
 Frame = -1

Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430
           H K  +AL YF  ME     PD +TFVSLLS CAHLGLV+DG  LF  MK +Y I P ME
Sbjct: 286 HCKDLKALTYFELMERDGALPDKITFVSLLSACAHLGLVKDGERLFSLMKAKYQINPIME 345

Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250
           HYACMVNL GRAGLINEAY I+  QMEF+AGPTVWGALLY+C  H N+D GE AA  LFD
Sbjct: 346 HYACMVNLYGRAGLINEAYAIIRDQMEFEAGPTVWGALLYSCYLHRNVDTGEIAAQYLFD 405

Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGL 139
           LEPDN HNFELL+KIYDNAGR +  E+V + M DRGL
Sbjct: 406 LEPDNEHNFELLMKIYDNAGRLEDAERVRKMMVDRGL 442


>ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
           chloroplastic [Vitis vinifera]
           gi|296084180|emb|CBI24568.3| unnamed protein product
           [Vitis vinifera]
          Length = 516

 Score =  215 bits (548), Expect = 4e-54
 Identities = 103/159 (64%), Positives = 125/159 (78%)
 Frame = -1

Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430
           H K  +A+ YF++M+ +++ PD VTFVSLLS CAHLGLV+DG  LF  M+  YG+ P ME
Sbjct: 356 HRKDLKAITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSME 415

Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250
           HYACMVNL GRAGLI EAY+I+ K+MEF+AGPTVWGALLYAC  H N+D+G+ AA  LF+
Sbjct: 416 HYACMVNLYGRAGLIEEAYEIIEKRMEFEAGPTVWGALLYACYFHHNVDIGKIAAECLFE 475

Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGLDS 133
           LEPDN HNFELL+ IY N GR + VEKV + MADRG DS
Sbjct: 476 LEPDNEHNFELLMNIYRNVGRLEDVEKVRKMMADRGFDS 514


>ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g25270, chloroplastic; Flags: Precursor
           gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis
           thaliana] gi|7269378|emb|CAB81338.1| putative protein
           [Arabidopsis thaliana] gi|332659633|gb|AEE85033.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 527

 Score =  213 bits (543), Expect = 2e-53
 Identities = 98/159 (61%), Positives = 121/159 (76%)
 Frame = -1

Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430
           H K+   L+YF QM  +N  PD +TFVS+LS+CA+ G+VEDG  LF  M   YGI P+ME
Sbjct: 369 HSKNSNGLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKME 428

Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250
           HYACMVNL GRAG++ EAY ++V++M  +AGPTVWGALLYAC  HGN D+GE AA RLF+
Sbjct: 429 HYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFE 488

Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGLDS 133
           LEPDN HNFELLI+IY  A R + VE+V Q M DRGL++
Sbjct: 489 LEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRGLET 527


>ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
            lyrata] gi|297313453|gb|EFH43876.1| hypothetical protein
            ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata]
          Length = 758

 Score =  211 bits (537), Expect = 8e-53
 Identities = 94/159 (59%), Positives = 123/159 (77%)
 Frame = -1

Query: 609  HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430
            H +     +YF QM++++  PD +TFVS+LS+CA+ G+VEDG  LF  M   YGI P+ME
Sbjct: 600  HSRDSNGFKYFEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGINPKME 659

Query: 429  HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250
            HYACMVNL GRAG++ EAY ++V++MEF+AGPTVWGALLYAC  HGN D+GE +A RLF+
Sbjct: 660  HYACMVNLYGRAGMMEEAYSMIVQEMEFEAGPTVWGALLYACYLHGNTDIGEVSAQRLFE 719

Query: 249  LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGLDS 133
            LEPDN HNFELL++IY  A R + VE+V Q + DRGL++
Sbjct: 720  LEPDNEHNFELLMRIYSKAKRAEDVERVRQMLVDRGLET 758


>ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g25270, chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  210 bits (534), Expect = 2e-52
 Identities = 99/159 (62%), Positives = 123/159 (77%)
 Frame = -1

Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430
           H+   +AL YF  ME+  +SPD VTFVSLLS CAHLGLV++G EL+  MK +YGI+P +E
Sbjct: 331 HFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRPTIE 390

Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250
           HYACMVNL GRAG+I EAY I+ K ME +AGPT+WGALLYAC  H ++D+ E AA RLF+
Sbjct: 391 HYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFE 450

Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGLDS 133
           LEPDN  NFELL+KIY NAGR +  ++V   MA+RGL+S
Sbjct: 451 LEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLNS 489