BLASTX nr result
ID: Coptis25_contig00007200
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00007200 (609 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|2... 216 3e-54 ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi... 215 4e-54 ref|NP_194257.1| pentatricopeptide repeat-containing protein [Ar... 213 2e-53 ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arab... 211 8e-53 ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 210 2e-52 >ref|XP_002322407.1| predicted protein [Populus trichocarpa] gi|222869403|gb|EEF06534.1| predicted protein [Populus trichocarpa] Length = 442 Score = 216 bits (550), Expect = 3e-54 Identities = 106/157 (67%), Positives = 118/157 (75%) Frame = -1 Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430 H K +AL YF ME PD +TFVSLLS CAHLGLV+DG LF MK +Y I P ME Sbjct: 286 HCKDLKALTYFELMERDGALPDKITFVSLLSACAHLGLVKDGERLFSLMKAKYQINPIME 345 Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250 HYACMVNL GRAGLINEAY I+ QMEF+AGPTVWGALLY+C H N+D GE AA LFD Sbjct: 346 HYACMVNLYGRAGLINEAYAIIRDQMEFEAGPTVWGALLYSCYLHRNVDTGEIAAQYLFD 405 Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGL 139 LEPDN HNFELL+KIYDNAGR + E+V + M DRGL Sbjct: 406 LEPDNEHNFELLMKIYDNAGRLEDAERVRKMMVDRGL 442 >ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Vitis vinifera] gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera] Length = 516 Score = 215 bits (548), Expect = 4e-54 Identities = 103/159 (64%), Positives = 125/159 (78%) Frame = -1 Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430 H K +A+ YF++M+ +++ PD VTFVSLLS CAHLGLV+DG LF M+ YG+ P ME Sbjct: 356 HRKDLKAITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIPSME 415 Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250 HYACMVNL GRAGLI EAY+I+ K+MEF+AGPTVWGALLYAC H N+D+G+ AA LF+ Sbjct: 416 HYACMVNLYGRAGLIEEAYEIIEKRMEFEAGPTVWGALLYACYFHHNVDIGKIAAECLFE 475 Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGLDS 133 LEPDN HNFELL+ IY N GR + VEKV + MADRG DS Sbjct: 476 LEPDNEHNFELLMNIYRNVGRLEDVEKVRKMMADRGFDS 514 >ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g25270, chloroplastic; Flags: Precursor gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana] gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana] gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 527 Score = 213 bits (543), Expect = 2e-53 Identities = 98/159 (61%), Positives = 121/159 (76%) Frame = -1 Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430 H K+ L+YF QM +N PD +TFVS+LS+CA+ G+VEDG LF M YGI P+ME Sbjct: 369 HSKNSNGLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKME 428 Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250 HYACMVNL GRAG++ EAY ++V++M +AGPTVWGALLYAC HGN D+GE AA RLF+ Sbjct: 429 HYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFE 488 Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGLDS 133 LEPDN HNFELLI+IY A R + VE+V Q M DRGL++ Sbjct: 489 LEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRGLET 527 >ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata] gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata] Length = 758 Score = 211 bits (537), Expect = 8e-53 Identities = 94/159 (59%), Positives = 123/159 (77%) Frame = -1 Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430 H + +YF QM++++ PD +TFVS+LS+CA+ G+VEDG LF M YGI P+ME Sbjct: 600 HSRDSNGFKYFEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGINPKME 659 Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250 HYACMVNL GRAG++ EAY ++V++MEF+AGPTVWGALLYAC HGN D+GE +A RLF+ Sbjct: 660 HYACMVNLYGRAGMMEEAYSMIVQEMEFEAGPTVWGALLYACYLHGNTDIGEVSAQRLFE 719 Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGLDS 133 LEPDN HNFELL++IY A R + VE+V Q + DRGL++ Sbjct: 720 LEPDNEHNFELLMRIYSKAKRAEDVERVRQMLVDRGLET 758 >ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like [Cucumis sativus] Length = 489 Score = 210 bits (534), Expect = 2e-52 Identities = 99/159 (62%), Positives = 123/159 (77%) Frame = -1 Query: 609 HWKHPQALEYFNQMENSNISPDSVTFVSLLSVCAHLGLVEDGRELFVKMKNRYGIKPRME 430 H+ +AL YF ME+ +SPD VTFVSLLS CAHLGLV++G EL+ MK +YGI+P +E Sbjct: 331 HFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRPTIE 390 Query: 429 HYACMVNLLGRAGLINEAYDIVVKQMEFDAGPTVWGALLYACSAHGNMDVGETAAARLFD 250 HYACMVNL GRAG+I EAY I+ K ME +AGPT+WGALLYAC H ++D+ E AA RLF+ Sbjct: 391 HYACMVNLYGRAGMIEEAYKIITKGMEIEAGPTIWGALLYACYLHSDVDIAEIAAERLFE 450 Query: 249 LEPDNAHNFELLIKIYDNAGRWDKVEKVMQSMADRGLDS 133 LEPDN NFELL+KIY NAGR + ++V MA+RGL+S Sbjct: 451 LEPDNELNFELLMKIYGNAGRSEDEKRVKLMMAERGLNS 489