BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007134
         (789 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...   133   8e-52
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...   118   9e-48
ref|XP_002528356.1| pentatricopeptide repeat-containing protein,...   112   9e-45
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...   114   1e-38
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...   115   1e-23

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  133 bits (334), Expect(2) = 8e-52
 Identities = 76/123 (61%), Positives = 89/123 (72%), Gaps = 2/123 (1%)
 Frame = -1

Query: 582 TRKENSLMSNDPRCTHAQLIKTENNDLSLINNLITSYSKSNLLSDALHLFRQ-IPSPNVV 406
           T    S  + +PR  HAQ IK+   D S  N+LIT YSKSNLLS A+ +F   IPSPNVV
Sbjct: 21  TATTTSTPNCNPRLIHAQAIKSAITDRSFYNSLITLYSKSNLLSKAVRIFHHHIPSPNVV 80

Query: 405 TCTALISS-TNTVFSFHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKL 229
           + TALIS+  +T F+  H+ISMLR+P LPN+RT ASLLKTCASL SL FGLQLHS SLKL
Sbjct: 81  SWTALISAYASTSFALLHFISMLRHPTLPNQRTLASLLKTCASLPSLSFGLQLHSLSLKL 140

Query: 228 CLS 220
            LS
Sbjct: 141 SLS 143



 Score = 97.4 bits (241), Expect(2) = 8e-52
 Identities = 47/75 (62%), Positives = 60/75 (80%)
 Frame = -2

Query: 227 VSHLPFTGSALVHFYSKCRLSNDAVKAFNEIAERDEVCYSAIIVGLAQNSQPTHALSLFA 48
           +S  PF  SALV+FYSKCRL  +A + F+EI ERDEVC++A+IVGLAQN++P  AL +F 
Sbjct: 142 LSAQPFVSSALVNFYSKCRLPLEACRVFDEITERDEVCFAAMIVGLAQNARPVDALLVFG 201

Query: 47  DMVSSNVGSTMYSVS 3
           +M + NVGSTMYSVS
Sbjct: 202 EMKACNVGSTMYSVS 216


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  118 bits (296), Expect(2) = 9e-48
 Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = -1

Query: 555 NDPRCTHAQLIKTENNDLSLINNLITSYSKSNLLSDALHLFRQIPSPNVVTCTALISSTN 376
           +DPR  HAQ IK+   +  + NNLIT YSK+NLL  +  LF QIP P++V+ TALIS+ +
Sbjct: 27  SDPRIDHAQAIKSPATECVVYNNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHS 86

Query: 375 TVF-SFHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCL 223
           + F S  H++SMLRYP  PNERT A L KTCASL  + FG  LHS + KL L
Sbjct: 87  STFLSLRHFVSMLRYPTFPNERTLAPLFKTCASLPCVSFGFALHSLAYKLSL 138



 Score = 98.6 bits (244), Expect(2) = 9e-48
 Identities = 47/71 (66%), Positives = 58/71 (81%)
 Frame = -2

Query: 215 PFTGSALVHFYSKCRLSNDAVKAFNEIAERDEVCYSAIIVGLAQNSQPTHALSLFADMVS 36
           P++GSALV+FYSKCRL NDA K F+EI+ RDE CYSA++VGLAQN+Q   ALS+F  M +
Sbjct: 142 PYSGSALVNFYSKCRLFNDACKVFDEISYRDEFCYSALVVGLAQNAQSIRALSMFRQMKA 201

Query: 35  SNVGSTMYSVS 3
           S V ST+YSVS
Sbjct: 202 SEVASTIYSVS 212


>ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532224|gb|EEF34028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 356

 Score =  112 bits (279), Expect(2) = 9e-45
 Identities = 61/114 (53%), Positives = 79/114 (69%), Gaps = 4/114 (3%)
 Frame = -1

Query: 552 DPRCTHAQLIKTENNDLSLINNLITSYSKSN---LLSDALHLFRQIPSPNVVTCTALISS 382
           DPR  HAQ IK+   +LS  N+LIT YS+S    + S A  LF  +PSPN+V+ T+LIS+
Sbjct: 10  DPRILHAQAIKSPYTNLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVSWTSLISA 69

Query: 381 -TNTVFSFHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCL 223
            T++  S HH++SMLR P LPN+RT ASL K C +LS+L FG  LHS +LKL L
Sbjct: 70  HTHSFLSLHHFLSMLRRPILPNQRTLASLFKACTNLSALSFGFSLHSMALKLSL 123



 Score = 95.1 bits (235), Expect(2) = 9e-45
 Identities = 47/71 (66%), Positives = 57/71 (80%)
 Frame = -2

Query: 215 PFTGSALVHFYSKCRLSNDAVKAFNEIAERDEVCYSAIIVGLAQNSQPTHALSLFADMVS 36
           PF+GSALV+FYSKCRL  +A K F+E+ ERDEVCY A+IVGLAQNS+   ALS+F +M  
Sbjct: 127 PFSGSALVNFYSKCRLPENARKVFDEMPERDEVCYGALIVGLAQNSRAIDALSVFNEMKF 186

Query: 35  SNVGSTMYSVS 3
            NV ST+YSVS
Sbjct: 187 CNVSSTVYSVS 197


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  114 bits (286), Expect(2) = 1e-38
 Identities = 62/116 (53%), Positives = 83/116 (71%), Gaps = 2/116 (1%)
 Frame = -1

Query: 561 MSNDPRCTHAQLIKTENNDLSLINNLITSYSKSNLLSDALHLFRQIP-SPNVVTCTALIS 385
           MS DPR  HA+ I +   D ++ NNLIT YSKSNL S A+ LF ++P  PNVV+ TALIS
Sbjct: 15  MSMDPRVRHARAITSHAKDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALIS 74

Query: 384 S-TNTVFSFHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCLS 220
           + +NT+ S  H+++MLR+  LPN RT ASL  TCA+L+++ F L LHS +LKL L+
Sbjct: 75  AHSNTLLSLRHFLAMLRHNTLPNHRTLASLFATCAALTAVSFALSLHSLALKLALA 130



 Score = 71.6 bits (174), Expect(2) = 1e-38
 Identities = 34/75 (45%), Positives = 52/75 (69%)
 Frame = -2

Query: 227 VSHLPFTGSALVHFYSKCRLSNDAVKAFNEIAERDEVCYSAIIVGLAQNSQPTHALSLFA 48
           ++H PF  S+L+  Y+K R+ ++A K F+EI + D VC+SA++V LAQNS+   ALS+F+
Sbjct: 129 LAHHPFPASSLLSVYAKLRMPHNARKVFDEIPQPDNVCFSALVVALAQNSRSVDALSVFS 188

Query: 47  DMVSSNVGSTMYSVS 3
           DM      ST++ VS
Sbjct: 189 DMRCRGFASTVHGVS 203


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  115 bits (287), Expect = 1e-23
 Identities = 63/116 (54%), Positives = 84/116 (72%), Gaps = 2/116 (1%)
 Frame = -1

Query: 561 MSNDPRCTHAQLIKTENNDLSLINNLITSYSKSNLLSDALHLFRQIP-SPNVVTCTALIS 385
           MS DPR  HAQ I +   D ++ NNLIT YSKS+L S A+ LF+++P  PNVV+ TALIS
Sbjct: 15  MSMDPRARHAQAITSHIKDRAVWNNLITHYSKSDLSSYAVSLFQRLPFPPNVVSWTALIS 74

Query: 384 S-TNTVFSFHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCLS 220
           + +NT+ S  H+++MLR+  LPN RT ASL  TCA+L+++ F L LHS +LKL LS
Sbjct: 75  AHSNTLLSLRHFLAMLRHNTLPNHRTVASLFTTCAALTAVSFALSLHSLALKLSLS 130



 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 41/111 (36%), Positives = 64/111 (57%)
 Frame = -2

Query: 335 TLNSPTSVPSHLYSKPAHLFLRYLLVFNFIPFLLNFVSHLPFTGSALVHFYSKCRLSNDA 156
           TL +  +V S   +  A   + + L  + +   L+   H PF  S+L+  Y+K R+  +A
Sbjct: 94  TLPNHRTVASLFTTCAALTAVSFALSLHSLALKLSLSQH-PFPASSLLSLYAKLRMPLNA 152

Query: 155 VKAFNEIAERDEVCYSAIIVGLAQNSQPTHALSLFADMVSSNVGSTMYSVS 3
            K F+EI + D VC+SA+IV LAQNS+   A S+F++M      ST++SVS
Sbjct: 153 RKVFDEIPQPDNVCFSALIVALAQNSRSVDASSVFSEMRGRGFASTVHSVS 203