BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007099
         (918 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   371   e-100
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   352   7e-95
ref|NP_199470.1| pentatricopeptide repeat-containing protein [Ar...   342   7e-92
ref|XP_002863397.1| pentatricopeptide repeat-containing protein ...   341   2e-91
ref|XP_003608637.1| Pentatricopeptide repeat-containing protein ...   335   1e-89

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic [Vitis vinifera]
          Length = 723

 Score =  371 bits (953), Expect = e-100
 Identities = 176/265 (66%), Positives = 217/265 (81%)
 Frame = -3

Query: 916  SGGKVEKAVSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRVYGVSMDKGVQPDDR 737
            SGG V++A+ +F+EM  L V++NVMGCTCL QCLG+A+RI+D+V+V+ VS+++GV+PDDR
Sbjct: 457  SGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDR 516

Query: 736  LCGCLLSVVSFCENDVEVGMILGCLERANPSLVAFVKLLGEEDVHLERIKEEFKQILNAV 557
            LCGCLLSVVSFCE   +   +L CL++ANP LVAFV LL EE +  E +KEEF+ IL   
Sbjct: 517  LCGCLLSVVSFCEGAEDANKVLACLQQANPKLVAFVNLL-EEKISFEALKEEFRGILTDT 575

Query: 556  ALEVRRPFCNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAKEWTLNLRSLSVGA 377
            A+E RRPFCNCLIDICR R+LHERAHELLY G +YGLYPGLH++TA EW L++RSLSVGA
Sbjct: 576  AVEARRPFCNCLIDICRNRSLHERAHELLYLGTLYGLYPGLHNRTADEWCLDVRSLSVGA 635

Query: 376  AQTAFEEWMGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSE 197
            A TA EEWMG +SK++ REE LP+ FSA+ G GTHKFS+GLA+A  SH+KKL APFT SE
Sbjct: 636  AHTALEEWMGTLSKIVQREEALPEAFSANTGTGTHKFSQGLASAFASHVKKLAAPFTQSE 695

Query: 196  EKAGSFVATREELTSWVQSNVQSLA 122
            EKAG FVATRE+L SWVQS + S A
Sbjct: 696  EKAGCFVATREDLVSWVQSRILSPA 720


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Cucumis sativus]
            gi|449521148|ref|XP_004167592.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  352 bits (903), Expect = 7e-95
 Identities = 165/268 (61%), Positives = 210/268 (78%)
 Frame = -3

Query: 916  SGGKVEKAVSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRVYGVSMDKGVQPDDR 737
            SGG V++++ +FEEML L V++NVM CTCLIQCLGK+ RI+D+VRV+ VS+ KG++PDDR
Sbjct: 443  SGGNVKRSMELFEEMLELGVEINVMCCTCLIQCLGKSGRIDDLVRVFNVSVQKGIKPDDR 502

Query: 736  LCGCLLSVVSFCENDVEVGMILGCLERANPSLVAFVKLLGEEDVHLERIKEEFKQILNAV 557
            LCGCLLSV+S C N  ++  +  CL++ANP LV+F+ LL + D+  E +K EF+ IL   
Sbjct: 503  LCGCLLSVLSLCYNSEDINKVFTCLQQANPKLVSFINLLQQNDITFEVVKNEFRNILGET 562

Query: 556  ALEVRRPFCNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAKEWTLNLRSLSVGA 377
            A E RRPFCNCLIDICR +NL ERAHELLY G +YGLYPGLH+KT  EW L++RSLSVGA
Sbjct: 563  APEARRPFCNCLIDICRNQNLRERAHELLYLGSLYGLYPGLHNKTETEWCLDVRSLSVGA 622

Query: 376  AQTAFEEWMGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSE 197
            AQTA EEWM  +SK++ REE LP+L SA  GAGTH+FS+GLAN+  SH+ KL APF   E
Sbjct: 623  AQTALEEWMITLSKIVQREEALPELLSAQTGAGTHRFSQGLANSFASHVDKLAAPFQLRE 682

Query: 196  EKAGSFVATREELTSWVQSNVQSLAVSA 113
            ++AG FVATRE+L +WV S V S+A +A
Sbjct: 683  DRAGWFVATREDLVTWVHSRVPSVAATA 710


>ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g46580, chloroplastic; Flags: Precursor
            gi|8885599|dbj|BAA97529.1| unnamed protein product
            [Arabidopsis thaliana] gi|332008017|gb|AED95400.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 711

 Score =  342 bits (877), Expect = 7e-92
 Identities = 159/267 (59%), Positives = 207/267 (77%)
 Frame = -3

Query: 916  SGGKVEKAVSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRVYGVSMDKGVQPDDR 737
            SGGK EKA+ +FEEML+  V++NVMGCTCL+QCLGKAKRI+DVV V+ +S+ +GV+PDDR
Sbjct: 444  SGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDR 503

Query: 736  LCGCLLSVVSFCENDVEVGMILGCLERANPSLVAFVKLLGEEDVHLERIKEEFKQILNAV 557
            LCGCLLSV++ CE+  +   ++ CLERAN  LV FV L+ +E    E +KEEFK ++NA 
Sbjct: 504  LCGCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINAT 563

Query: 556  ALEVRRPFCNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAKEWTLNLRSLSVGA 377
             +E RRPFCNCLIDICR  N HERAHELLY G ++GLYPGLH+KT KEW+L++RSLSVGA
Sbjct: 564  QVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGA 623

Query: 376  AQTAFEEWMGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSE 197
            A+TA EEWM  ++ ++ R+E LP+LF A  G GTH+FS+GLAN+   HL++L APF  S 
Sbjct: 624  AETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFSQGLANSFALHLQQLSAPFRQS- 682

Query: 196  EKAGSFVATREELTSWVQSNVQSLAVS 116
            ++ G FVAT+E+L SW++S    L  S
Sbjct: 683  DRPGIFVATKEDLVSWLESKFPPLVTS 709


>ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297309232|gb|EFH39656.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 711

 Score =  341 bits (874), Expect = 2e-91
 Identities = 158/267 (59%), Positives = 207/267 (77%)
 Frame = -3

Query: 916  SGGKVEKAVSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRVYGVSMDKGVQPDDR 737
            SGGK EKA+ +FEEML   V++NVMGCTCL+QCLGKAKRI+D+V V+ +S+ +GV+PDDR
Sbjct: 444  SGGKAEKAMKLFEEMLEAGVQVNVMGCTCLVQCLGKAKRIDDLVYVFDLSIQRGVKPDDR 503

Query: 736  LCGCLLSVVSFCENDVEVGMILGCLERANPSLVAFVKLLGEEDVHLERIKEEFKQILNAV 557
            LCGCLLSV++ CE+  +   ++ CLERAN  LV FV L+ +E    E +KEEFK ++NA 
Sbjct: 504  LCGCLLSVMALCESSEDAEKVMACLERANRKLVTFVNLIVDEKTEFETVKEEFKLVINAT 563

Query: 556  ALEVRRPFCNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAKEWTLNLRSLSVGA 377
             +E RRPFCNCLIDICR +  HERAHELLY G ++GLYPGLH+KT KEW+L++RSLSVGA
Sbjct: 564  QVEARRPFCNCLIDICRGKKRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGA 623

Query: 376  AQTAFEEWMGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSE 197
            A+TA EEWM  ++ ++ R+E LP+LF A  G GTH+FS+GLAN+   HL++L APF  S 
Sbjct: 624  AETALEEWMRTLANIIKRQEDLPELFLAQTGTGTHRFSQGLANSFALHLQQLSAPFRQS- 682

Query: 196  EKAGSFVATREELTSWVQSNVQSLAVS 116
            ++AG FVAT+E+L SW++S    L  S
Sbjct: 683  DRAGIFVATKEDLVSWLESKFPPLVTS 709


>ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355509692|gb|AES90834.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  335 bits (858), Expect = 1e-89
 Identities = 155/267 (58%), Positives = 205/267 (76%)
 Frame = -3

Query: 916  SGGKVEKAVSMFEEMLRLRVKLNVMGCTCLIQCLGKAKRIEDVVRVYGVSMDKGVQPDDR 737
            S G V+KA+ +FEEM +  ++LNVMGCTCLIQCLGKA  I+D+V+V+ +S+++GV+PDDR
Sbjct: 448  SEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDR 507

Query: 736  LCGCLLSVVSFCENDVEVGMILGCLERANPSLVAFVKLLGEEDVHLERIKEEFKQILNAV 557
            LCGCLLSVVS  +   +   +L CL+RANP LVAF++L+ +E+   E +KEEFK I++  
Sbjct: 508  LCGCLLSVVSLSQGSKDQEKVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKAIMSNA 567

Query: 556  ALEVRRPFCNCLIDICRKRNLHERAHELLYCGIVYGLYPGLHSKTAKEWTLNLRSLSVGA 377
             +EVRRPFCNCLIDICR ++L ERAHELLY G +YG YP LH+KT  EW L++R+LSVGA
Sbjct: 568  VVEVRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGA 627

Query: 376  AQTAFEEWMGAVSKVMDREEPLPQLFSAHAGAGTHKFSEGLANALDSHLKKLGAPFTPSE 197
            A TA EEWM  ++K++ REE LP LF A  G G HKF++GL  +  SHL+KL APF  SE
Sbjct: 628  ALTALEEWMTTLTKIVKREEALPDLFLAQTGTGAHKFAQGLNISFASHLRKLAAPFRQSE 687

Query: 196  EKAGSFVATREELTSWVQSNVQSLAVS 116
            +K G F+AT+E+L SWVQSN  S +++
Sbjct: 688  DKVGCFIATKEDLISWVQSNSPSASIA 714