BLASTX nr result
ID: Coptis25_contig00007074
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00007074 (388 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi] 89 4e-16 gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 76 2e-12 emb|CAN78580.1| hypothetical protein VITISV_013552 [Vitis vinifera] 73 3e-11 emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera] 72 4e-11 emb|CAN75232.1| hypothetical protein VITISV_016125 [Vitis vinifera] 72 4e-11 >gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi] Length = 1902 Score = 89.0 bits (219), Expect = 4e-16 Identities = 46/107 (42%), Positives = 63/107 (58%) Frame = +1 Query: 1 LESNDQALAQAKALIDETRDVGLQQLIRYQADMKRKYDKKVRLKVFEKDDWVLCRKTRLI 180 L S++ A+ K L++ETR + L +YQ + K+ DKKVR+K +K D VL RK Sbjct: 1795 LASDEPAILTDKDLLEETRCSAVHNLRKYQEETKKWRDKKVRIKNLQKGDLVLIRKQNAS 1854 Query: 181 DSGKFGENWTGPYIIDRPATKGSYFLRDLDGNVLDKPWNAFHLRKFY 321 +GKF WTGP++I GS+ L D +GN+L WN LRKFY Sbjct: 1855 MAGKFQPKWTGPFLIAECNRPGSFHLSDSEGNILPHTWNIDDLRKFY 1901 >gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] Length = 1103 Score = 76.3 bits (186), Expect = 2e-12 Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Frame = +1 Query: 4 ESNDQALAQAKALIDETRDVGLQQLIRYQADMKRKYDKKVRLKVFEKDDWVLCR---KTR 174 E N L + I+E RD L ++ YQ R Y+ KV+ + F D+VL R + Sbjct: 994 EENSAMLNDSLDTINERRDQALIRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKK 1053 Query: 175 LIDSGKFGENWTGPYIIDRPATKGSYFLRDLDGNVLDKPWNAFHLRKFY 321 +GK G NW GPYII G Y L+DL+ N + +PWN +L+KFY Sbjct: 1054 EEGAGKLGINWEGPYIITEVVRNGVYRLKDLEDNPVKRPWNVINLKKFY 1102 >emb|CAN78580.1| hypothetical protein VITISV_013552 [Vitis vinifera] Length = 978 Score = 72.8 bits (177), Expect = 3e-11 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 3/96 (3%) Frame = +1 Query: 46 DETRDVGLQQLIRYQADMKRKYDKKVRLKVFEKDDWVLCR---KTRLIDSGKFGENWTGP 216 DE R+ + ++ YQ Y++KVR + F+ VL + T + +GKF NW GP Sbjct: 883 DEVRESAVIRMADYQQRASAHYNRKVRPRAFKNGTLVLRKVFENTTEVSAGKFQANWEGP 942 Query: 217 YIIDRPATKGSYFLRDLDGNVLDKPWNAFHLRKFYK 324 YI+ + + G+Y L+ LDG L +PWN +L+++Y+ Sbjct: 943 YIVSKASNNGAYHLQKLDGTPLLRPWNVSNLKQYYQ 978 >emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera] Length = 965 Score = 72.4 bits (176), Expect = 4e-11 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 3/96 (3%) Frame = +1 Query: 46 DETRDVGLQQLIRYQADMKRKYDKKVRLKVFEKDDWVLCR---KTRLIDSGKFGENWTGP 216 DE R+ +++ YQ Y++KVR + F+ VL + T I +GKF NW GP Sbjct: 870 DEVRESATIRMVDYQQRASTHYNRKVRPRNFKNGTLVLRKVFENTAEIGAGKFQANWEGP 929 Query: 217 YIIDRPATKGSYFLRDLDGNVLDKPWNAFHLRKFYK 324 YI+ + G+Y L+ LDG L +PWNA +L+++Y+ Sbjct: 930 YIVSKANENGAYHLQKLDGTPLLRPWNASNLKQYYQ 965 >emb|CAN75232.1| hypothetical protein VITISV_016125 [Vitis vinifera] Length = 936 Score = 72.4 bits (176), Expect = 4e-11 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Frame = +1 Query: 46 DETRDVGLQQLIRYQADMKRKYDKKVRLKVFEKDDWVL---CRKTRLIDSGKFGENWTGP 216 DE R+ Q+ YQ Y+ KVR + F+ VL C T +GKF NW GP Sbjct: 841 DEVRESAAIQMADYQQRASAHYNSKVRPRNFKNGMLVLRKVCENTTETGAGKFQANWKGP 900 Query: 217 YIIDRPATKGSYFLRDLDGNVLDKPWNAFHLRKFYK 324 YI+ + + G+Y L+ LDG L +PWN +L+++Y+ Sbjct: 901 YIVSKSSESGAYHLQKLDGTPLLRPWNVSNLKQYYQ 936