BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007008
         (622 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003623091.1| F-box/kelch-repeat protein [Medicago truncat...    59   5e-07
ref|XP_003623090.1| F-box protein [Medicago truncatula] gi|35549...    59   5e-07
gb|ACJ85835.1| unknown [Medicago truncatula] gi|388523125|gb|AFK...    59   7e-07
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    35   3e-06
gb|AFK44336.1| unknown [Lotus japonicus]                               57   3e-06

>ref|XP_003623091.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355498106|gb|AES79309.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 389

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 25/43 (58%), Positives = 36/43 (83%)
 Frame = +1

Query: 115 VPGELVIELLSFLPIKSVCKFRCISKSWLKLFTNDPFFAKLHL 243
           +PGEL++E+LSFLP+KS+ + +C+SKSW K   ++P FAKLHL
Sbjct: 13  LPGELIVEVLSFLPVKSLMRLKCVSKSW-KYLISEPSFAKLHL 54


>ref|XP_003623090.1| F-box protein [Medicago truncatula] gi|355498105|gb|AES79308.1|
           F-box protein [Medicago truncatula]
          Length = 385

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 25/43 (58%), Positives = 36/43 (83%)
 Frame = +1

Query: 115 VPGELVIELLSFLPIKSVCKFRCISKSWLKLFTNDPFFAKLHL 243
           +PGEL++E+LSFLP+KS+ + +C+SKSW K   ++P FAKLHL
Sbjct: 13  LPGELIVEVLSFLPVKSLMRLKCVSKSW-KYLISEPSFAKLHL 54


>gb|ACJ85835.1| unknown [Medicago truncatula] gi|388523125|gb|AFK49624.1| unknown
           [Medicago truncatula]
          Length = 327

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 25/48 (52%), Positives = 37/48 (77%)
 Frame = +1

Query: 100 ITKKSVPGELVIELLSFLPIKSVCKFRCISKSWLKLFTNDPFFAKLHL 243
           +T   +PG+L+ ELLSFLP+KS+ +F+C++K+W K   +DP F KLHL
Sbjct: 4   VTPVFLPGDLIAELLSFLPVKSLVRFKCVNKAW-KTLISDPTFVKLHL 50


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 35.0 bits (79), Expect(3) = 3e-06
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +1

Query: 115 VPGELVIELLSFLPIKSVCKFRCISKSWLKLFTNDPFFAKLHL 243
           +P ++++++LS LP+ S+ +FR + + W +L   D   A  HL
Sbjct: 30  LPRDIILDILSRLPVTSLVQFRFVCRGW-RLMAQDSLLASKHL 71



 Score = 32.7 bits (73), Expect(3) = 3e-06
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
 Frame = +2

Query: 401 IYIWNPLTESTIHISCPESTN-------FGFGLNQATNEYKVVRY----DGYGDKSDNNK 547
           +Y+ NP T     +  P+S         FGFG +  T  YKVV+     +GYG  S   +
Sbjct: 143 VYVHNPFTRDFKQL--PKSLQYPDQEVVFGFGYHPMTEVYKVVKVVYYRNGYGGFSRFRR 200

Query: 548 F---RSFVSVCTLSREPSWRTI 604
               +S V V TL   P+WR++
Sbjct: 201 ITCSQSEVQVLTLG-SPTWRSL 221



 Score = 28.1 bits (61), Expect(3) = 3e-06
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 300 AETSDNSKLFEL--PFWPESPNYFVHGICNGM 389
           AE+ D   + +L  PFW   P + V G CNG+
Sbjct: 100 AESRDKDMVRKLTIPFWASMPEFEVVGSCNGL 131


>gb|AFK44336.1| unknown [Lotus japonicus]
          Length = 193

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 26/45 (57%), Positives = 35/45 (77%)
 Frame = +1

Query: 115 VPGELVIELLSFLPIKSVCKFRCISKSWLKLFTNDPFFAKLHLLL 249
           +P ELV+E+LS LP+KS+ KFRC+ KSW+ L  +DP+F K HL L
Sbjct: 63  LPDELVVEILSRLPVKSLLKFRCVCKSWM-LLISDPYFIKKHLHL 106