BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00007004
         (1226 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   269   1e-69
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   265   2e-68
ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containi...   244   2e-62
ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containi...   243   6e-62
ref|XP_002880355.1| pentatricopeptide repeat-containing protein ...   226   7e-57

>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
            [Vitis vinifera]
          Length = 612

 Score =  269 bits (687), Expect = 1e-69
 Identities = 129/188 (68%), Positives = 155/188 (82%)
 Frame = -3

Query: 1212 MQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEHYACLVDLFGRAG 1033
            M R G KP++IT VVILNACSHSGLV +G+  FESM+  +GI   QEHYACL+DL GRAG
Sbjct: 417  MVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAG 476

Query: 1032 RFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLEPQSSAAYVLLSN 853
             F+EV D L+KM  KPD RVWNA+LG C+IHG+ ELGR AAE LI+LEPQSS AYVLLS+
Sbjct: 477  CFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSS 536

Query: 852  IYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFDQLHPLKDEIYLALEQ 673
            IYA+ GRW+SV+KVR LMN RQVKKE+AISW+E+E+KVHSF+V D  HPLK++IY  LEQ
Sbjct: 537  IYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVLEQ 596

Query: 672  LTGQMDDD 649
            L GQM++D
Sbjct: 597  LAGQMEED 604


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  265 bits (676), Expect = 2e-68
 Identities = 120/191 (62%), Positives = 156/191 (81%)
 Frame = -3

Query: 1224 LFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEHYACLVDLF 1045
            +F  M RLG KP+RITL+V+LNACSHSGLV EG++L+ES+T  HG+  +QEHYACL+DL 
Sbjct: 404  MFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLL 463

Query: 1044 GRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLEPQSSAAYV 865
            GRAG FD + + L+KM CKP+  +WNA+LG C++HGN E GR  AE +I+L+PQSSAAYV
Sbjct: 464  GRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYV 523

Query: 864  LLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFDQLHPLKDEIYL 685
            LLS+I+A  GRW+ VE VR LMN R V+K++AISW+E+E+KVHSFT  D+LHPLK+ IYL
Sbjct: 524  LLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYL 583

Query: 684  ALEQLTGQMDD 652
            AL+QL G M++
Sbjct: 584  ALKQLAGHMEE 594


>ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like
            [Cucumis sativus]
          Length = 611

 Score =  244 bits (624), Expect = 2e-62
 Identities = 113/192 (58%), Positives = 150/192 (78%)
 Frame = -3

Query: 1224 LFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEHYACLVDLF 1045
            +F+ M   G KP+RIT +VIL+ACSHSGLV EG++ F++MT  HG+  DQEHYACL+DL 
Sbjct: 416  MFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLL 475

Query: 1044 GRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLEPQSSAAYV 865
            GRAG F E+ + L+ MSCKPD RVW+A+LG C+IH N ELGR  AE +I+L+PQSSAAYV
Sbjct: 476  GRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYV 535

Query: 864  LLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFDQLHPLKDEIYL 685
             L+++YA  G+W+SVEKVR LM+ + ++KE+ ISW++V +K HSF   D+LHPLK+EIYL
Sbjct: 536  SLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYL 595

Query: 684  ALEQLTGQMDDD 649
             LEQL    ++D
Sbjct: 596  LLEQLARHTEED 607


>ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like
            [Cucumis sativus]
          Length = 611

 Score =  243 bits (621), Expect = 6e-62
 Identities = 112/192 (58%), Positives = 150/192 (78%)
 Frame = -3

Query: 1224 LFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEHYACLVDLF 1045
            +F+ M   G KP+RIT +VIL+ACSHSGLV EG++ F++MT  HG+  DQEHY+CL+DL 
Sbjct: 416  MFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLL 475

Query: 1044 GRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLEPQSSAAYV 865
            GRAG F E+ + L+ MSCKPD RVW+A+LG C+IH N ELGR  AE +I+L+PQSSAAYV
Sbjct: 476  GRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYV 535

Query: 864  LLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFDQLHPLKDEIYL 685
             L+++YA  G+W+SVEKVR LM+ + ++KE+ ISW++V +K HSF   D+LHPLK+EIYL
Sbjct: 536  SLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYL 595

Query: 684  ALEQLTGQMDDD 649
             LEQL    ++D
Sbjct: 596  LLEQLARHTEED 607


>ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297326194|gb|EFH56614.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 599

 Score =  226 bits (577), Expect = 7e-57
 Identities = 109/192 (56%), Positives = 142/192 (73%), Gaps = 4/192 (2%)
 Frame = -3

Query: 1212 MQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEHYACLVDLFGRAG 1033
            M +    PNR TLVVILNACSHSGLV+EG++ FESMT  HGI  DQEHYACL+DL GRAG
Sbjct: 404  MIKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAG 463

Query: 1032 RFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLEPQSSAAYVLLSN 853
             F E+   +++M  +PD  +WNAILG C+IHGN ELG+ AAE LI L+P+SSA Y+LLS+
Sbjct: 464  CFKELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSS 523

Query: 852  IYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFD----QLHPLKDEIYL 685
            IYA  G+W+ VEK+R +M +R+V KE+A+SW+E+E+KV +FTV D      H  K+EIY 
Sbjct: 524  IYADHGKWELVEKLRGIMKKRRVNKEKAVSWIEIENKVKAFTVSDGSHAHAHARKEEIYF 583

Query: 684  ALEQLTGQMDDD 649
             L  L   M+++
Sbjct: 584  ILHNLAALMEEE 595