BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006991
         (845 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II su...   219   6e-55
ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II su...   214   1e-53
ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Sela...   213   3e-53
ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycin...   213   4e-53
ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 ...   213   6e-53

>ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis
           vinifera] gi|147769002|emb|CAN66735.1| hypothetical
           protein VITISV_024186 [Vitis vinifera]
           gi|296083263|emb|CBI22899.3| unnamed protein product
           [Vitis vinifera]
          Length = 114

 Score =  219 bits (558), Expect = 6e-55
 Identities = 97/104 (93%), Positives = 102/104 (98%)
 Frame = -3

Query: 648 NNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAADPTLPR 469
           NNILYPKED+EQKILLYACRNCDHQE A+NNCVYRNE+HHSVGERTQVLQDVAADPTLPR
Sbjct: 11  NNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQDVAADPTLPR 70

Query: 468 TKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 337
           TKSVRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 71  TKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Cucumis sativus] gi|449517969|ref|XP_004166016.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB9-like [Cucumis sativus]
          Length = 114

 Score =  214 bits (546), Expect = 1e-53
 Identities = 94/104 (90%), Positives = 101/104 (97%)
 Frame = -3

Query: 648 NNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAADPTLPR 469
           NNILYPKED+++KILLYACRNCDHQE ADNNCVYRNE+HH+VGERTQVLQDVAADPTLPR
Sbjct: 11  NNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPR 70

Query: 468 TKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 337
           TK+VRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 71  TKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
           gi|302811122|ref|XP_002987251.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300145148|gb|EFJ11827.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300156045|gb|EFJ22675.1| hypothetical protein
           SELMODRAFT_232741 [Selaginella moellendorffii]
          Length = 115

 Score =  213 bits (543), Expect = 3e-53
 Identities = 94/104 (90%), Positives = 100/104 (96%)
 Frame = -3

Query: 648 NNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAADPTLPR 469
           NNILYPKED++QKILLYACRNCDHQE ADNNCVYRNEVHHS GERTQVLQDVA+DPTLPR
Sbjct: 11  NNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEVHHSAGERTQVLQDVASDPTLPR 70

Query: 468 TKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 337
           TKSVRC +C HGEAVFFQAT+RGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 71  TKSVRCVRCKHGEAVFFQATTRGEEGMTLFFVCCNPNCGYRWRD 114


>ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycine max]
           gi|255627167|gb|ACU13928.1| unknown [Glycine max]
          Length = 114

 Score =  213 bits (542), Expect = 4e-53
 Identities = 94/104 (90%), Positives = 101/104 (97%)
 Frame = -3

Query: 648 NNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAADPTLPR 469
           NNILYPKED++QK+LL+ACRNCDHQE ADN CVYRNE+HHSVGERTQVLQDVAADPTLPR
Sbjct: 11  NNILYPKEDRDQKVLLFACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQDVAADPTLPR 70

Query: 468 TKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 337
           TKSVRC+QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 71  TKSVRCSQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 [Medicago truncatula]
           gi|87240462|gb|ABD32320.1| DNA-directed RNA polymerase,
           subunit C11/M/9 [Medicago truncatula]
           gi|217075262|gb|ACJ85991.1| unknown [Medicago
           truncatula] gi|355483825|gb|AES65028.1| DNA-directed RNA
           polymerase II subunit RPB9 [Medicago truncatula]
           gi|388497558|gb|AFK36845.1| unknown [Medicago
           truncatula]
          Length = 114

 Score =  213 bits (541), Expect = 6e-53
 Identities = 95/104 (91%), Positives = 99/104 (95%)
 Frame = -3

Query: 648 NNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAADPTLPR 469
           NNILYPKED+EQKILLYACRNCDHQE ADN CVYRNE+HHSV ERTQVLQDVAADPTLPR
Sbjct: 11  NNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPR 70

Query: 468 TKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 337
           TK+VRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 71  TKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114