BLASTX nr result
ID: Coptis25_contig00006981
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006981
(1822 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284832.1| PREDICTED: WD repeat-containing protein 18 [... 141 5e-31
ref|XP_002510201.1| WD-repeat protein, putative [Ricinus communi... 126 2e-26
ref|XP_004141383.1| PREDICTED: WD repeat-containing protein 18-l... 124 6e-26
ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|2... 122 3e-25
ref|XP_003531886.1| PREDICTED: WD repeat-containing protein 18-l... 120 1e-24
>ref|XP_002284832.1| PREDICTED: WD repeat-containing protein 18 [Vitis vinifera]
gi|302142303|emb|CBI19506.3| unnamed protein product
[Vitis vinifera]
Length = 448
Score = 141 bits (356), Expect = 5e-31
Identities = 70/103 (67%), Positives = 80/103 (77%)
Frame = +2
Query: 245 WGLSEGRFLRTIEFPSIIDALALDPGEKSFFYGSRDGKIYIAALNGESSYSSSFGMHIIG 424
W LS GR LR + FPSIIDA+ALDPGE F+ GSRDGKIYIAALN S S+S+GMHIIG
Sbjct: 207 WSLSTGRLLRNVVFPSIIDAIALDPGEHVFYAGSRDGKIYIAALNAVGSSSNSYGMHIIG 266
Query: 425 ALSEHSMAVSCLALNMDGNLLVSGLVDGTIRVWDTKTLQIVRM 553
+LS+HS AV+CLA DG LLVSG DG +RVWDTKT I R+
Sbjct: 267 SLSDHSKAVTCLAFATDGILLVSGSEDGMVRVWDTKTRNIFRI 309
Score = 85.9 bits (211), Expect(2) = 2e-20
Identities = 47/102 (46%), Positives = 65/102 (63%)
Frame = +2
Query: 968 GPVNNILVIRRSLFRNPQTAVNKQPSRRHGSSLPSPLDKYTNSKDDENDINPIITLPSLC 1147
GPV+NILV+RR NP+ + + S++HGS L PLDKY NS D+ D I +
Sbjct: 315 GPVSNILVVRRPNDSNPRNS--QTSSKKHGSFLSPPLDKYLNSSDENEDAKVFIGCQTTF 372
Query: 1148 TETPDGLLYYTSHVMNTYIKEFQQQGSSATSEMEMERVRFDS 1273
+++ D Y + H++ IKE QQQGSSA +EMEMER++ DS
Sbjct: 373 SKSVDAS-YRSCHIIIDQIKELQQQGSSAATEMEMERLKIDS 413
Score = 41.2 bits (95), Expect(2) = 2e-20
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 1273 LEMAHQWMKMYEDLHHFCIDEFVDGD 1350
++M QW KMYE+LH FC++E +D D
Sbjct: 417 VQMVQQWKKMYENLHQFCVNELLDAD 442
>ref|XP_002510201.1| WD-repeat protein, putative [Ricinus communis]
gi|223550902|gb|EEF52388.1| WD-repeat protein, putative
[Ricinus communis]
Length = 452
Score = 126 bits (317), Expect = 2e-26
Identities = 62/102 (60%), Positives = 76/102 (74%)
Frame = +2
Query: 245 WGLSEGRFLRTIEFPSIIDALALDPGEKSFFYGSRDGKIYIAALNGESSYSSSFGMHIIG 424
W LS+G LR I FPSIID+LALDPGE F+ G RDG IYIAALN +SS + S +HIIG
Sbjct: 204 WSLSKGNLLRNIVFPSIIDSLALDPGENVFYAGCRDGNIYIAALNADSSSTKSHWLHIIG 263
Query: 425 ALSEHSMAVSCLALNMDGNLLVSGLVDGTIRVWDTKTLQIVR 550
+LS HS V+CLA + +GNLL++G DG IRVWD ++ IVR
Sbjct: 264 SLSSHSKPVTCLAYSANGNLLLAGSEDGIIRVWDPRSHNIVR 305
Score = 89.0 bits (219), Expect(2) = 5e-20
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Frame = +2
Query: 968 GPVNNILVIRRSLFRNPQ-TAVNKQPSRRHGSSLPSPLDKYTNSKDDENDINPIITLPSL 1144
GPVNNI +++R + NP+ +++ + SRRHGSSLP PLDKY NS D ++ L
Sbjct: 312 GPVNNIQIVKRPHYLNPRASSIVQASSRRHGSSLPPPLDKYVNSTDKSIGSTAVVRLQDT 371
Query: 1145 CTETPDGLLYYTSHVMNTYIKEFQQQGSSATSEMEMERVRFDSLRW 1282
C P + Y + V+ IKE QQQGS+A +EME+ER++ D ++
Sbjct: 372 C-NNPLDVSYVSYQVIANQIKELQQQGSAAAAEMEVERLKLDCAQY 416
Score = 37.0 bits (84), Expect(2) = 5e-20
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 1273 LEMAHQWMKMYEDLHHFCIDEFVDGD 1350
++M +W KMY++LH C++E ++GD
Sbjct: 417 MQMLQKWKKMYDNLHQLCVNELLEGD 442
>ref|XP_004141383.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus]
gi|449531442|ref|XP_004172695.1| PREDICTED: WD
repeat-containing protein 18-like [Cucumis sativus]
Length = 451
Score = 124 bits (312), Expect = 6e-26
Identities = 59/103 (57%), Positives = 76/103 (73%)
Frame = +2
Query: 245 WGLSEGRFLRTIEFPSIIDALALDPGEKSFFYGSRDGKIYIAALNGESSYSSSFGMHIIG 424
W LS+G+ LR I FPSIIDA+ALDPGE F+ G RDGKIY AALN + SS +G+HI+G
Sbjct: 202 WSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILG 261
Query: 425 ALSEHSMAVSCLALNMDGNLLVSGLVDGTIRVWDTKTLQIVRM 553
++S S +V+ LA GNLL+SG DG IRVWDT+T ++R+
Sbjct: 262 SISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRV 304
Score = 66.6 bits (161), Expect(2) = 3e-15
Identities = 41/101 (40%), Positives = 61/101 (60%)
Frame = +2
Query: 968 GPVNNILVIRRSLFRNPQTAVNKQPSRRHGSSLPSPLDKYTNSKDDENDINPIITLPSLC 1147
GPVNNIL++++ Q+ ++ R+H LP L K+ NSKD E++ +I PS
Sbjct: 314 GPVNNILLVQQQPLPKSQST-SQGSLRKHRPLLPPALAKFENSKD-EDEYTGVIIDPSGP 371
Query: 1148 TETPDGLLYYTSHVMNTYIKEFQQQGSSATSEMEMERVRFD 1270
+ G + +SHVM+ I E QQQGS+AT ME+ER++ D
Sbjct: 372 PKESTGFSFLSSHVMDDQITELQQQGSAATG-MELERLKHD 411
Score = 43.1 bits (100), Expect(2) = 3e-15
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 1276 EMAHQWMKMYEDLHHFCIDEFVDGDQNKRI 1365
+M W KMY++LH FC++E +DG+Q K I
Sbjct: 417 QMLQHWRKMYDNLHQFCVNELLDGNQTKNI 446
>ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|222835469|gb|EEE73904.1|
predicted protein [Populus trichocarpa]
Length = 446
Score = 122 bits (306), Expect = 3e-25
Identities = 61/103 (59%), Positives = 75/103 (72%)
Frame = +2
Query: 245 WGLSEGRFLRTIEFPSIIDALALDPGEKSFFYGSRDGKIYIAALNGESSYSSSFGMHIIG 424
W LS+G LR I FPSIID++ LDPGE F+ G RDGKI+IAAL +SS S +HIIG
Sbjct: 203 WSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGGRDGKIHIAALGADSSSIKSHWLHIIG 262
Query: 425 ALSEHSMAVSCLALNMDGNLLVSGLVDGTIRVWDTKTLQIVRM 553
+LS HS V+CLA + +GN+L+SG DG IRVWD KT IVR+
Sbjct: 263 SLSSHSKNVTCLAYSTNGNVLLSGSEDGMIRVWDPKTHNIVRV 305
Score = 84.3 bits (207), Expect(2) = 2e-19
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = +2
Query: 968 GPVNNILVIRRSLFRNPQTAVNKQPS-RRHGSSLPSPLDKYTNSKDDENDINPIITLPSL 1144
GPVNNI V+ R + NP++ N Q S RRHG SLP PL KY N+ D E I+ + L +
Sbjct: 311 GPVNNIHVLNRPAYLNPRSLSNVQASSRRHGLSLPPPLSKYINTMD-EKVISAAVNLQAT 369
Query: 1145 CTETPDGLLYYTSHVMNTYIKEFQQQGSSATSEMEMERVRFD 1270
C D +S V+N IKE QQQGS+A +EME+E+++ D
Sbjct: 370 CNNPLDASCI-SSQVINCQIKELQQQGSAAAAEMEVEKLKLD 410
Score = 39.7 bits (91), Expect(2) = 2e-19
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 1273 LEMAHQWMKMYEDLHHFCIDEFVDGDQNK 1359
++M +W K Y++LH FC+DE ++GD K
Sbjct: 415 MQMLQRWKKTYDNLHEFCVDELLEGDNVK 443
>ref|XP_003531886.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]
Length = 449
Score = 120 bits (301), Expect = 1e-24
Identities = 58/103 (56%), Positives = 73/103 (70%)
Frame = +2
Query: 245 WGLSEGRFLRTIEFPSIIDALALDPGEKSFFYGSRDGKIYIAALNGESSYSSSFGMHIIG 424
W LS G LR I FPSII+ +ALDP E F+ GS DGKI+IAALN ES ++++GMHIIG
Sbjct: 202 WSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTESITTNNYGMHIIG 261
Query: 425 ALSEHSMAVSCLALNMDGNLLVSGLVDGTIRVWDTKTLQIVRM 553
+ S HS V+CLA NLL++G DG +RVW+ +T IVRM
Sbjct: 262 SFSNHSNQVTCLAYGTSENLLITGSEDGMVRVWNARTRNIVRM 304
Score = 87.8 bits (216), Expect(2) = 2e-19
Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Frame = +2
Query: 968 GPVNNILVIRRSLFRNPQTAVNKQPS-RRHGSSLPSPLDKYTNSKDDENDINPIITLPSL 1144
GPVNNILV+RR + + N Q S R+ GS+LP PL+KY NS DD+ D+ +I+L
Sbjct: 310 GPVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDLDMKTMISLGGG 369
Query: 1145 CTETPDGLLYYTSHVMNTYIKEFQQQGSSATSEMEMERVRFD 1270
Y +SHV++ YIKE Q QGS+A SEMEME+++ D
Sbjct: 370 RRSVDPS--YLSSHVISNYIKELQHQGSAAASEMEMEKLKHD 409
Score = 35.8 bits (81), Expect(2) = 2e-19
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 1273 LEMAHQWMKMYEDLHHFCIDEFVDGDQNKRI 1365
++MA+Q KM E+LH FC+ E +DG Q + +
Sbjct: 414 VQMANQLKKMNENLHQFCVKELLDGGQARTL 444