BLASTX nr result

ID: Coptis25_contig00006975 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006975
         (1097 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516579.1| 60S ribosomal protein L37, putative [Ricinus...   132   2e-28
ref|XP_002309570.1| predicted protein [Populus trichocarpa] gi|1...   131   3e-28
ref|XP_002324820.1| predicted protein [Populus trichocarpa] gi|2...   130   4e-28
gb|ABK93790.1| unknown [Populus trichocarpa] gi|118486063|gb|ABK...   130   6e-28
emb|CBI20899.3| unnamed protein product [Vitis vinifera]              128   3e-27

>ref|XP_002516579.1| 60S ribosomal protein L37, putative [Ricinus communis]
            gi|223544399|gb|EEF45920.1| 60S ribosomal protein L37,
            putative [Ricinus communis]
          Length = 96

 Score =  132 bits (331), Expect = 2e-28
 Identities = 60/66 (90%), Positives = 65/66 (98%)
 Frame = +2

Query: 899  FHLQKSRCSACAYPASRIRKYNWSVKAIRRKTTGTGRMQYLRHLPRRFKSNFREGTQAAP 1078
            FHLQKSRCSACAYPASR+RKYNWSVKAIRRKTTGTGRM+YLRH+PRRFK+NFREGTQA P
Sbjct: 27   FHLQKSRCSACAYPASRLRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKTNFREGTQAPP 86

Query: 1079 RSKGAA 1096
            R+KGAA
Sbjct: 87   RNKGAA 92


>ref|XP_002309570.1| predicted protein [Populus trichocarpa] gi|118482197|gb|ABK93027.1|
            unknown [Populus trichocarpa] gi|222855546|gb|EEE93093.1|
            predicted protein [Populus trichocarpa]
          Length = 94

 Score =  131 bits (329), Expect = 3e-28
 Identities = 59/66 (89%), Positives = 65/66 (98%)
 Frame = +2

Query: 899  FHLQKSRCSACAYPASRIRKYNWSVKAIRRKTTGTGRMQYLRHLPRRFKSNFREGTQAAP 1078
            FHLQKSRCSACA+PA+R+RKYNWSVKAIRRKTTGTGRM+YLRHLPRRFK+NFREGTQA P
Sbjct: 27   FHLQKSRCSACAFPAARVRKYNWSVKAIRRKTTGTGRMKYLRHLPRRFKTNFREGTQATP 86

Query: 1079 RSKGAA 1096
            R+KGAA
Sbjct: 87   RNKGAA 92


>ref|XP_002324820.1| predicted protein [Populus trichocarpa] gi|222866254|gb|EEF03385.1|
            predicted protein [Populus trichocarpa]
          Length = 112

 Score =  130 bits (328), Expect = 4e-28
 Identities = 68/108 (62%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
 Frame = +2

Query: 797  SFLPKIRSCTPSVQ---GIGEDWFGEXXXXXXXXCY-----CFHLQKSRCSACAYPASRI 952
            +FLP  R      +   G G   FG+        C       FHLQKSRCSACA+PA+R+
Sbjct: 1    TFLPSDRVFAAEEEEEMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARV 60

Query: 953  RKYNWSVKAIRRKTTGTGRMQYLRHLPRRFKSNFREGTQAAPRSKGAA 1096
            RKYNWS KAIRRKTTGTGRM+YLRHLPRRFK+NFREGTQAAPR+KGAA
Sbjct: 61   RKYNWSEKAIRRKTTGTGRMKYLRHLPRRFKTNFREGTQAAPRNKGAA 108


>gb|ABK93790.1| unknown [Populus trichocarpa] gi|118486063|gb|ABK94875.1| unknown
            [Populus trichocarpa]
          Length = 96

 Score =  130 bits (327), Expect = 6e-28
 Identities = 59/66 (89%), Positives = 65/66 (98%)
 Frame = +2

Query: 899  FHLQKSRCSACAYPASRIRKYNWSVKAIRRKTTGTGRMQYLRHLPRRFKSNFREGTQAAP 1078
            FHLQKSRCSACA+PA+R+RKYNWS KAIRRKTTGTGRM+YLRHLPRRFK+NFREGTQAAP
Sbjct: 27   FHLQKSRCSACAFPAARVRKYNWSEKAIRRKTTGTGRMKYLRHLPRRFKTNFREGTQAAP 86

Query: 1079 RSKGAA 1096
            R+KGAA
Sbjct: 87   RNKGAA 92


>emb|CBI20899.3| unnamed protein product [Vitis vinifera]
          Length = 156

 Score =  128 bits (321), Expect = 3e-27
 Identities = 69/109 (63%), Positives = 79/109 (72%), Gaps = 5/109 (4%)
 Frame = +2

Query: 785  LL*FSFLPKIRSCTPSVQGIGEDWFGEXXXXXXXXCY-----CFHLQKSRCSACAYPASR 949
            LL FS   ++ S TP + G G   FG+        C       FHLQKSRC+AC +P+SR
Sbjct: 48   LLKFSSEARV-SATPQM-GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACGFPSSR 105

Query: 950  IRKYNWSVKAIRRKTTGTGRMQYLRHLPRRFKSNFREGTQAAPRSKGAA 1096
            IRKYNWSVKAIRRKTTGTGRM+YLRH+P RFKSNFREGT+AAPR KGAA
Sbjct: 106  IRKYNWSVKAIRRKTTGTGRMRYLRHVPCRFKSNFREGTEAAPRKKGAA 154


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