BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006955
         (651 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK48456.1| unknown [Lotus japonicus]                               91   1e-16
ref|XP_003523474.1| PREDICTED: splicing factor U2af large subuni...    91   2e-16
ref|XP_003527581.1| PREDICTED: splicing factor U2af large subuni...    89   5e-16
ref|XP_002327819.1| predicted protein [Populus trichocarpa] gi|2...    89   7e-16
ref|XP_002267854.2| PREDICTED: splicing factor U2af large subuni...    89   9e-16

>gb|AFK48456.1| unknown [Lotus japonicus]
          Length = 527

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 8/117 (6%)
 Frame = +2

Query: 158 TRHVH*VYVGGLPNKTDKQAIARFFNDLL-----RDPSESGVVVDVYINEEKNFAIVEFK 322
           TRH   VY+GGLP  T++Q+IA FF+ ++             VV+VYIN EK FA +E +
Sbjct: 175 TRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMR 234

Query: 323 SPRDAIEAVREDGIVFEDATLNIRWPTDYNPTLILDLDPKQKSCPWLK---YGLRGG 484
           +  +A  A+  DGIVFE  ++ +R PTDYNPTL   L P Q S P+L     GL GG
Sbjct: 235 TVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPS-PYLNLSAVGLSGG 290


>ref|XP_003523474.1| PREDICTED: splicing factor U2af large subunit B-like [Glycine max]
          Length = 600

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 7/146 (4%)
 Frame = +2

Query: 65  PRSYIKQVPLVTSVIQGLEHA-IAGTNGKTED-TRHVH*VYVGGLPNKTDKQAIARFFND 238
           P  +    PL TS +Q      +      T+  TRH   VYVGGLP   ++Q++A FF+ 
Sbjct: 227 PGMFPNMFPLATSQMQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 286

Query: 239 LL-----RDPSESGVVVDVYINEEKNFAIVEFKSPRDAIEAVREDGIVFEDATLNIRWPT 403
           ++             VV+VYIN +K FA VE +S  +A  A+  DGI+FE A + +R PT
Sbjct: 287 VMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPT 346

Query: 404 DYNPTLILDLDPKQKSCPWLKYGLRG 481
           DYNP+L   L P Q + P L  G  G
Sbjct: 347 DYNPSLAATLGPSQPN-PNLNLGAVG 371


>ref|XP_003527581.1| PREDICTED: splicing factor U2af large subunit A-like [Glycine max]
          Length = 605

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 7/146 (4%)
 Frame = +2

Query: 65  PRSYIKQVPLVTSVIQGLEHA-IAGTNGKTED-TRHVH*VYVGGLPNKTDKQAIARFFND 238
           P  +    PL T+ +Q      +      T+  TRH   VYVGGLP   ++Q++A FF+ 
Sbjct: 232 PGMFPNMFPLATNQMQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQ 291

Query: 239 LL-----RDPSESGVVVDVYINEEKNFAIVEFKSPRDAIEAVREDGIVFEDATLNIRWPT 403
           ++             VV+VYIN +K FA VE +S  +A  A+  DGI+FE A + +R PT
Sbjct: 292 VMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPT 351

Query: 404 DYNPTLILDLDPKQKSCPWLKYGLRG 481
           DYNP+L   L P Q + P L  G  G
Sbjct: 352 DYNPSLAATLGPSQPN-PNLNLGAVG 376


>ref|XP_002327819.1| predicted protein [Populus trichocarpa] gi|222836904|gb|EEE75297.1|
           predicted protein [Populus trichocarpa]
          Length = 541

 Score = 89.0 bits (219), Expect = 7e-16
 Identities = 61/164 (37%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
 Frame = +2

Query: 29  GTLIPIGISSW*PRSYIKQVPLVTSVIQGLEHAIAGTNGKTEDTRHVH*VYVGGLPNKTD 208
           GT  PI      P  +    PL TS   G    +       + TRH   VYVGGLP   +
Sbjct: 162 GTTPPI------PGMFPNMFPLGTSQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTAN 215

Query: 209 KQAIARFFNDLL-----RDPSESGVVVDVYINEEKNFAIVEFKSPRDAIEAVREDGIVFE 373
           +Q++A FF+ ++             VV+VYIN EK FA VE +S  +A  A+  DGI+FE
Sbjct: 216 EQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFE 275

Query: 374 DATLNIRWPTDYNPTLILDLDPKQK------SCPWLKYGLRGGL 487
            A + +R P+DYNP+L   L P Q       S   L  G  GGL
Sbjct: 276 GAPVKVRRPSDYNPSLAATLGPSQPNPNLNLSAVGLAPGSAGGL 319


>ref|XP_002267854.2| PREDICTED: splicing factor U2af large subunit B-like, partial
           [Vitis vinifera]
          Length = 410

 Score = 88.6 bits (218), Expect = 9e-16
 Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
 Frame = +2

Query: 158 TRHVH*VYVGGLPNKTDKQAIARFFNDLL-----RDPSESGVVVDVYINEEKNFAIVEFK 322
           TRH   VYVGGLP   ++Q IA FF+ ++             VV+VYIN EK FA VE +
Sbjct: 103 TRHARRVYVGGLPPLANEQTIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 162

Query: 323 SPRDAIEAVREDGIVFEDATLNIRWPTDYNPTLILDLDPKQKS 451
           S  +A  A+  DGI+FE  ++ +R PTDYNP+L   L P Q S
Sbjct: 163 SVEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPS 205