BLASTX nr result
ID: Coptis25_contig00006947
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00006947 (843 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABK95089.1| unknown [Populus trichocarpa] 80 8e-27 ref|XP_002314152.1| predicted protein [Populus trichocarpa] gi|2... 78 3e-26 ref|NP_566886.2| protein plastid transcriptionally active 16 [Ar... 71 2e-23 ref|XP_003537975.1| PREDICTED: uncharacterized protein LOC100801... 73 5e-23 ref|XP_002299849.1| predicted protein [Populus trichocarpa] gi|1... 70 8e-23 >gb|ABK95089.1| unknown [Populus trichocarpa] Length = 513 Score = 80.5 bits (197), Expect(2) = 8e-27 Identities = 39/60 (65%), Positives = 48/60 (80%) Frame = -1 Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKAAPTEPKKEVKNVFGGLFKQETFYMDDD 208 AKAR+LP +KAV+KQ +PK R+L PK+E K KA TE K EV+ VFGGLF+QET Y+DDD Sbjct: 454 AKARSLPVQKAVVKQPSPKPRALKPKEEPKPKAKETESKAEVRKVFGGLFQQETIYIDDD 513 Score = 66.6 bits (161), Expect(2) = 8e-27 Identities = 43/123 (34%), Positives = 53/123 (43%) Frame = -3 Query: 841 PVDQLFSIIPEDGRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 662 PVD+LFS IPEDGRR+ Sbjct: 330 PVDELFSAIPEDGRRKVYAEALAKAKAEEETRVAAEKASEAAEAAKKLGDEVKKLSEQGA 389 Query: 661 XXXXXXXXXXXXXXXAGTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTPDEKPKVQIAT 482 AG SVEN +KA +S+GFSW++ SSQ++TAVQT E KVQ+AT Sbjct: 390 KAASLAEEAQGKAEAAGASVENFLSKATGVSSGFSWEKLSSQLSTAVQTTSENTKVQLAT 449 Query: 481 VRG 473 VRG Sbjct: 450 VRG 452 >ref|XP_002314152.1| predicted protein [Populus trichocarpa] gi|222850560|gb|EEE88107.1| predicted protein [Populus trichocarpa] Length = 322 Score = 77.8 bits (190), Expect(2) = 3e-26 Identities = 38/60 (63%), Positives = 47/60 (78%) Frame = -1 Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKAAPTEPKKEVKNVFGGLFKQETFYMDDD 208 AKAR+LP +KAV+KQ +PK +L PK+E K KA TE K EV+ VFGGLF+QET Y+DDD Sbjct: 263 AKARSLPVQKAVVKQPSPKPLALKPKEEPKPKAKETESKAEVRKVFGGLFQQETIYIDDD 322 Score = 67.4 bits (163), Expect(2) = 3e-26 Identities = 44/123 (35%), Positives = 53/123 (43%) Frame = -3 Query: 841 PVDQLFSIIPEDGRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 662 PVD+LFS IPEDGRR+ Sbjct: 139 PVDELFSAIPEDGRRKVYAEALAKAKAEEETRVAAEKASEAAEAAKKLGDEVKKLSEQGA 198 Query: 661 XXXXXXXXXXXXXXXAGTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTPDEKPKVQIAT 482 AG SVEN +KA +S+GFSW++ SSQI+TAVQT E KVQ+AT Sbjct: 199 KAASLAEEAQGKAEAAGASVENFLSKATGVSSGFSWEKLSSQISTAVQTTSENTKVQLAT 258 Query: 481 VRG 473 VRG Sbjct: 259 VRG 261 >ref|NP_566886.2| protein plastid transcriptionally active 16 [Arabidopsis thaliana] gi|5541681|emb|CAB51187.1| putative protein [Arabidopsis thaliana] gi|332644683|gb|AEE78204.1| protein plastid transcriptionally active 16 [Arabidopsis thaliana] Length = 510 Score = 71.2 bits (173), Expect(2) = 2e-23 Identities = 42/123 (34%), Positives = 52/123 (42%) Frame = -3 Query: 841 PVDQLFSIIPEDGRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 662 PVD+LFS+IPEDGRR+ Sbjct: 332 PVDELFSVIPEDGRRKVYADAIARERAEEEAKVAADKAREAAEAAKEFEKQMQKLSEKEA 391 Query: 661 XXXXXXXXXXXXXXXAGTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTPDEKPKVQIAT 482 G +V+ LFNKAKD+S+G SW + SQ ATA+Q E PKVQ+AT Sbjct: 392 EAASLAEDAQQKADAVGVTVDGLFNKAKDISSGLSWNKLGSQFATAIQNASETPKVQVAT 451 Query: 481 VRG 473 VRG Sbjct: 452 VRG 454 Score = 64.7 bits (156), Expect(2) = 2e-23 Identities = 34/60 (56%), Positives = 41/60 (68%) Frame = -1 Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKAAPTEPKKEVKNVFGGLFKQETFYMDDD 208 AKAR LP KKAV+KQ + PK+E P +P+KEV+ VFGGLFKQET Y+DDD Sbjct: 456 AKARNLPPKKAVVKQRPSSPFASKPKEE-----RPKKPEKEVRKVFGGLFKQETIYIDDD 510 >ref|XP_003537975.1| PREDICTED: uncharacterized protein LOC100801140 [Glycine max] Length = 516 Score = 72.8 bits (177), Expect(2) = 5e-23 Identities = 47/124 (37%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Frame = -3 Query: 838 VDQLFSIIPEDGRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 659 VD+LFS IPEDGRR+ Sbjct: 336 VDELFSPIPEDGRRKAYAEMQEKTKAEEEARVAAEKAREASESAKKLEEEVKRLSQQETR 395 Query: 658 XXXXXXXXXXXXXXAGTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTP--DEKPKVQIA 485 G SVENL NKAKD AGFSW++ SSQI T++Q P DEKPKVQ+A Sbjct: 396 AASLAQEAQEKAEAGGASVENLLNKAKDFGAGFSWEKLSSQITTSIQKPDEDEKPKVQLA 455 Query: 484 TVRG 473 TVRG Sbjct: 456 TVRG 459 Score = 61.6 bits (148), Expect(2) = 5e-23 Identities = 35/60 (58%), Positives = 40/60 (66%) Frame = -1 Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKAAPTEPKKEVKNVFGGLFKQETFYMDDD 208 AKAR L KAV+KQ TP+ + PK E K TE KEV+ VFGGLFKQET Y+DDD Sbjct: 461 AKARNLAPNKAVVKQ-TPQRSAAKPKVE---KPKQTETPKEVRKVFGGLFKQETIYVDDD 516 >ref|XP_002299849.1| predicted protein [Populus trichocarpa] gi|118487759|gb|ABK95703.1| unknown [Populus trichocarpa] gi|222847107|gb|EEE84654.1| predicted protein [Populus trichocarpa] Length = 516 Score = 70.5 bits (171), Expect(2) = 8e-23 Identities = 36/61 (59%), Positives = 47/61 (77%), Gaps = 1/61 (1%) Frame = -1 Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKA-APTEPKKEVKNVFGGLFKQETFYMDD 211 AKAR+LP +KAV+K+ PKL +L PK+E K KA TE K E++ +FGGLF+QET Y+DD Sbjct: 456 AKARSLPGQKAVVKRPGPKLFALKPKEEPKPKAKESTESKTELRKMFGGLFQQETIYIDD 515 Query: 210 D 208 D Sbjct: 516 D 516 Score = 63.2 bits (152), Expect(2) = 8e-23 Identities = 30/47 (63%), Positives = 37/47 (78%) Frame = -3 Query: 613 GTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTPDEKPKVQIATVRG 473 G SVE+ KAK++ +G SW++ SSQI+TAVQT EK KVQIATVRG Sbjct: 408 GASVESFLGKAKEIGSGLSWEKISSQISTAVQTTSEKTKVQIATVRG 454