BLASTX nr result

ID: Coptis25_contig00006947 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006947
         (843 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK95089.1| unknown [Populus trichocarpa]                           80   8e-27
ref|XP_002314152.1| predicted protein [Populus trichocarpa] gi|2...    78   3e-26
ref|NP_566886.2| protein plastid transcriptionally active 16 [Ar...    71   2e-23
ref|XP_003537975.1| PREDICTED: uncharacterized protein LOC100801...    73   5e-23
ref|XP_002299849.1| predicted protein [Populus trichocarpa] gi|1...    70   8e-23

>gb|ABK95089.1| unknown [Populus trichocarpa]
          Length = 513

 Score = 80.5 bits (197), Expect(2) = 8e-27
 Identities = 39/60 (65%), Positives = 48/60 (80%)
 Frame = -1

Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKAAPTEPKKEVKNVFGGLFKQETFYMDDD 208
           AKAR+LP +KAV+KQ +PK R+L PK+E K KA  TE K EV+ VFGGLF+QET Y+DDD
Sbjct: 454 AKARSLPVQKAVVKQPSPKPRALKPKEEPKPKAKETESKAEVRKVFGGLFQQETIYIDDD 513



 Score = 66.6 bits (161), Expect(2) = 8e-27
 Identities = 43/123 (34%), Positives = 53/123 (43%)
 Frame = -3

Query: 841 PVDQLFSIIPEDGRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 662
           PVD+LFS IPEDGRR+                                            
Sbjct: 330 PVDELFSAIPEDGRRKVYAEALAKAKAEEETRVAAEKASEAAEAAKKLGDEVKKLSEQGA 389

Query: 661 XXXXXXXXXXXXXXXAGTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTPDEKPKVQIAT 482
                          AG SVEN  +KA  +S+GFSW++ SSQ++TAVQT  E  KVQ+AT
Sbjct: 390 KAASLAEEAQGKAEAAGASVENFLSKATGVSSGFSWEKLSSQLSTAVQTTSENTKVQLAT 449

Query: 481 VRG 473
           VRG
Sbjct: 450 VRG 452


>ref|XP_002314152.1| predicted protein [Populus trichocarpa] gi|222850560|gb|EEE88107.1|
           predicted protein [Populus trichocarpa]
          Length = 322

 Score = 77.8 bits (190), Expect(2) = 3e-26
 Identities = 38/60 (63%), Positives = 47/60 (78%)
 Frame = -1

Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKAAPTEPKKEVKNVFGGLFKQETFYMDDD 208
           AKAR+LP +KAV+KQ +PK  +L PK+E K KA  TE K EV+ VFGGLF+QET Y+DDD
Sbjct: 263 AKARSLPVQKAVVKQPSPKPLALKPKEEPKPKAKETESKAEVRKVFGGLFQQETIYIDDD 322



 Score = 67.4 bits (163), Expect(2) = 3e-26
 Identities = 44/123 (35%), Positives = 53/123 (43%)
 Frame = -3

Query: 841 PVDQLFSIIPEDGRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 662
           PVD+LFS IPEDGRR+                                            
Sbjct: 139 PVDELFSAIPEDGRRKVYAEALAKAKAEEETRVAAEKASEAAEAAKKLGDEVKKLSEQGA 198

Query: 661 XXXXXXXXXXXXXXXAGTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTPDEKPKVQIAT 482
                          AG SVEN  +KA  +S+GFSW++ SSQI+TAVQT  E  KVQ+AT
Sbjct: 199 KAASLAEEAQGKAEAAGASVENFLSKATGVSSGFSWEKLSSQISTAVQTTSENTKVQLAT 258

Query: 481 VRG 473
           VRG
Sbjct: 259 VRG 261


>ref|NP_566886.2| protein plastid transcriptionally active 16 [Arabidopsis thaliana]
           gi|5541681|emb|CAB51187.1| putative protein [Arabidopsis
           thaliana] gi|332644683|gb|AEE78204.1| protein plastid
           transcriptionally active 16 [Arabidopsis thaliana]
          Length = 510

 Score = 71.2 bits (173), Expect(2) = 2e-23
 Identities = 42/123 (34%), Positives = 52/123 (42%)
 Frame = -3

Query: 841 PVDQLFSIIPEDGRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 662
           PVD+LFS+IPEDGRR+                                            
Sbjct: 332 PVDELFSVIPEDGRRKVYADAIARERAEEEAKVAADKAREAAEAAKEFEKQMQKLSEKEA 391

Query: 661 XXXXXXXXXXXXXXXAGTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTPDEKPKVQIAT 482
                           G +V+ LFNKAKD+S+G SW +  SQ ATA+Q   E PKVQ+AT
Sbjct: 392 EAASLAEDAQQKADAVGVTVDGLFNKAKDISSGLSWNKLGSQFATAIQNASETPKVQVAT 451

Query: 481 VRG 473
           VRG
Sbjct: 452 VRG 454



 Score = 64.7 bits (156), Expect(2) = 2e-23
 Identities = 34/60 (56%), Positives = 41/60 (68%)
 Frame = -1

Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKAAPTEPKKEVKNVFGGLFKQETFYMDDD 208
           AKAR LP KKAV+KQ      +  PK+E      P +P+KEV+ VFGGLFKQET Y+DDD
Sbjct: 456 AKARNLPPKKAVVKQRPSSPFASKPKEE-----RPKKPEKEVRKVFGGLFKQETIYIDDD 510


>ref|XP_003537975.1| PREDICTED: uncharacterized protein LOC100801140 [Glycine max]
          Length = 516

 Score = 72.8 bits (177), Expect(2) = 5e-23
 Identities = 47/124 (37%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
 Frame = -3

Query: 838 VDQLFSIIPEDGRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 659
           VD+LFS IPEDGRR+                                             
Sbjct: 336 VDELFSPIPEDGRRKAYAEMQEKTKAEEEARVAAEKAREASESAKKLEEEVKRLSQQETR 395

Query: 658 XXXXXXXXXXXXXXAGTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTP--DEKPKVQIA 485
                          G SVENL NKAKD  AGFSW++ SSQI T++Q P  DEKPKVQ+A
Sbjct: 396 AASLAQEAQEKAEAGGASVENLLNKAKDFGAGFSWEKLSSQITTSIQKPDEDEKPKVQLA 455

Query: 484 TVRG 473
           TVRG
Sbjct: 456 TVRG 459



 Score = 61.6 bits (148), Expect(2) = 5e-23
 Identities = 35/60 (58%), Positives = 40/60 (66%)
 Frame = -1

Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKAAPTEPKKEVKNVFGGLFKQETFYMDDD 208
           AKAR L   KAV+KQ TP+  +  PK E   K   TE  KEV+ VFGGLFKQET Y+DDD
Sbjct: 461 AKARNLAPNKAVVKQ-TPQRSAAKPKVE---KPKQTETPKEVRKVFGGLFKQETIYVDDD 516


>ref|XP_002299849.1| predicted protein [Populus trichocarpa] gi|118487759|gb|ABK95703.1|
           unknown [Populus trichocarpa]
           gi|222847107|gb|EEE84654.1| predicted protein [Populus
           trichocarpa]
          Length = 516

 Score = 70.5 bits (171), Expect(2) = 8e-23
 Identities = 36/61 (59%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -1

Query: 387 AKARTLPAKKAVIKQITPKLRSLTPKKELKSKA-APTEPKKEVKNVFGGLFKQETFYMDD 211
           AKAR+LP +KAV+K+  PKL +L PK+E K KA   TE K E++ +FGGLF+QET Y+DD
Sbjct: 456 AKARSLPGQKAVVKRPGPKLFALKPKEEPKPKAKESTESKTELRKMFGGLFQQETIYIDD 515

Query: 210 D 208
           D
Sbjct: 516 D 516



 Score = 63.2 bits (152), Expect(2) = 8e-23
 Identities = 30/47 (63%), Positives = 37/47 (78%)
 Frame = -3

Query: 613 GTSVENLFNKAKDMSAGFSWKEFSSQIATAVQTPDEKPKVQIATVRG 473
           G SVE+   KAK++ +G SW++ SSQI+TAVQT  EK KVQIATVRG
Sbjct: 408 GASVESFLGKAKEIGSGLSWEKISSQISTAVQTTSEKTKVQIATVRG 454