BLASTX nr result

ID: Coptis25_contig00006909 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006909
         (780 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36128.3| unnamed protein product [Vitis vinifera]              183   3e-44
ref|XP_002284468.1| PREDICTED: 30S ribosomal protein S17, chloro...   182   7e-44
ref|XP_002516024.1| 30S ribosomal protein S17, putative [Ricinus...   175   9e-42
ref|XP_004141765.1| PREDICTED: 30S ribosomal protein S17, chloro...   172   1e-40
ref|XP_002298222.1| predicted protein [Populus trichocarpa] gi|2...   167   2e-39

>emb|CBI36128.3| unnamed protein product [Vitis vinifera]
          Length = 189

 Score =  183 bits (465), Expect = 3e-44
 Identities = 98/155 (63%), Positives = 117/155 (75%)
 Frame = +1

Query: 70  MLLTSPSSILQLPPLHSLKISTPFLNGSSPIHLLNKPTSSFPQSNPSTPSFLPTIRAMKT 249
           +LL +P+  L    L SLK++TPFL+GSS + LL+KP+S+   S P  P+FLP IRAMK+
Sbjct: 38  ILLPNPAMSL----LQSLKLTTPFLHGSSNLSLLSKPSSTSLASPPPPPTFLPPIRAMKS 93

Query: 250 MQGRVVCSTNDKTVAVEVVRLAPHPXXXXXXXXXXXXQAHDPENQFKVGDVVQLEKSRPI 429
           MQGRVVC+T+DKTVAVEVVRLAPHP            QAHDP+NQFKVGDVVQLEKSRPI
Sbjct: 94  MQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPI 153

Query: 430 SKTKAFVAVAVPARNRPEPKEAVPQDLGIPLESQQ 534
           SKTK FVA+ VP RNR + +EA   +L IPLESQQ
Sbjct: 154 SKTKTFVAIPVPNRNRAKSQEAAAGELEIPLESQQ 188


>ref|XP_002284468.1| PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Vitis
           vinifera]
          Length = 145

 Score =  182 bits (462), Expect = 7e-44
 Identities = 94/141 (66%), Positives = 110/141 (78%)
 Frame = +1

Query: 112 LHSLKISTPFLNGSSPIHLLNKPTSSFPQSNPSTPSFLPTIRAMKTMQGRVVCSTNDKTV 291
           L SLK++TPFL+GSS + LL+KP+S+   S P  P+FLP IRAMK+MQGRVVC+T+DKTV
Sbjct: 4   LQSLKLTTPFLHGSSNLSLLSKPSSTSLASPPPPPTFLPPIRAMKSMQGRVVCATSDKTV 63

Query: 292 AVEVVRLAPHPXXXXXXXXXXXXQAHDPENQFKVGDVVQLEKSRPISKTKAFVAVAVPAR 471
           AVEVVRLAPHP            QAHDP+NQFKVGDVVQLEKSRPISKTK FVA+ VP R
Sbjct: 64  AVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPISKTKTFVAIPVPNR 123

Query: 472 NRPEPKEAVPQDLGIPLESQQ 534
           NR + +EA   +L IPLESQQ
Sbjct: 124 NRAKSQEAAAGELEIPLESQQ 144


>ref|XP_002516024.1| 30S ribosomal protein S17, putative [Ricinus communis]
           gi|223544929|gb|EEF46444.1| 30S ribosomal protein S17,
           putative [Ricinus communis]
          Length = 152

 Score =  175 bits (444), Expect = 9e-42
 Identities = 91/142 (64%), Positives = 109/142 (76%), Gaps = 1/142 (0%)
 Frame = +1

Query: 112 LHSLKISTPFLNGSSPIHLLNKPTSSFPQSNPSTPSFLPTIRAMKTMQGRVVCSTNDKTV 291
           L+SL +STPFLNG++P+  L+KPTSS    +P+  SF+P +RAMK++QGRVVC+TNDKTV
Sbjct: 7   LNSLTLSTPFLNGTAPLSNLSKPTSSLSLQHPNPFSFMPPVRAMKSIQGRVVCATNDKTV 66

Query: 292 AVEVVRLAPHPXXXXXXXXXXXXQAHDPENQFKVGDVVQLEKSRPISKTKAFVAVAVPAR 471
           +VEV RLAPHP            QAHDPENQFKVGD+VQLEKS+PISKTKAF+A+ VPAR
Sbjct: 67  SVEVTRLAPHPKYKRRVRKKKKFQAHDPENQFKVGDLVQLEKSKPISKTKAFIAIPVPAR 126

Query: 472 NRPEPK-EAVPQDLGIPLESQQ 534
            R E K E     LGIPLESQQ
Sbjct: 127 IRKEKKQENDDGGLGIPLESQQ 148


>ref|XP_004141765.1| PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Cucumis
           sativus] gi|449519627|ref|XP_004166836.1| PREDICTED: 30S
           ribosomal protein S17, chloroplastic-like [Cucumis
           sativus]
          Length = 164

 Score =  172 bits (435), Expect = 1e-40
 Identities = 96/163 (58%), Positives = 120/163 (73%), Gaps = 7/163 (4%)
 Frame = +1

Query: 67  TMLLTSPSSILQLPPLHSLK---ISTPFLNGSSPIHLLNKPTSSFPQSNPSTPSFLPTIR 237
           ++ LTS SS+LQ+PP+ SLK   IS+ FL+GS+P+  L+KP+SS       TP+FLP+IR
Sbjct: 2   SITLTS-SSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIR 60

Query: 238 AMKTMQGRVVCSTNDKTVAVEVVRLAPHPXXXXXXXXXXXXQAHDPENQFKVGDVVQLEK 417
           AM+++QGRVVC+TNDKTVAVEVVRLAPHP            QAHDP+NQF+VGD V+LEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEK 120

Query: 418 SRPISKTKAFVAVAVPARNRPEPKEAVP----QDLGIPLESQQ 534
            RPISK K F+A+ VPARN    K+AV      +LGIPLESQQ
Sbjct: 121 CRPISKMKTFLAIPVPARN--SKKKAVEGGEGGELGIPLESQQ 161


>ref|XP_002298222.1| predicted protein [Populus trichocarpa] gi|222845480|gb|EEE83027.1|
           predicted protein [Populus trichocarpa]
          Length = 160

 Score =  167 bits (423), Expect = 2e-39
 Identities = 94/161 (58%), Positives = 112/161 (69%), Gaps = 5/161 (3%)
 Frame = +1

Query: 67  TMLLTSPSSILQLPPLHSLKISTPFLNGSSPIHLLNKPTSSFPQSNPSTPSFLPTIRAMK 246
           TM LTS         L+SL +STPFL+G++ +  L+KPTSS         +FLP IRAMK
Sbjct: 4   TMSLTSS--------LNSLTLSTPFLHGTTQLSHLSKPTSSLTLRPAKPFTFLPPIRAMK 55

Query: 247 TMQGRVVCSTNDKTVAVEVVRLAPHPXXXXXXXXXXXXQAHDPENQFKVGDVVQLEKSRP 426
           ++QG+VVC+T+DKTVAVEV RLAPHP            QAHDPENQFKVGD+VQLEKSRP
Sbjct: 56  SLQGKVVCATSDKTVAVEVTRLAPHPKYKRRVRKKKKYQAHDPENQFKVGDLVQLEKSRP 115

Query: 427 ISKTKAFVAVAVPARNRPEPKEAV-----PQDLGIPLESQQ 534
           ISKTK+F+AV VPAR + E KE        Q+LGIPLESQQ
Sbjct: 116 ISKTKSFLAVPVPARKKKEKKEGEEGGVGSQELGIPLESQQ 156