BLASTX nr result
ID: Coptis25_contig00006869
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006869
(921 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containi... 265 1e-68
emb|CBI35164.3| unnamed protein product [Vitis vinifera] 265 1e-68
emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera] 265 1e-68
ref|XP_002319650.1| predicted protein [Populus trichocarpa] gi|2... 251 7e-66
ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containi... 251 4e-65
>ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820-like
[Vitis vinifera]
Length = 731
Score = 265 bits (676), Expect = 1e-68
Identities = 152/314 (48%), Positives = 191/314 (60%), Gaps = 26/314 (8%)
Frame = -2
Query: 866 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 687
DI+ A +F ++ RDICMWNA++ G AMHG GEEAL++F ++E+ G+KPNDITFIG+LH
Sbjct: 409 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 468
Query: 686 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 507
ACSHA LVT+G LF M H FG+VP++EHYG MVDLLGRAGL+D AHE
Sbjct: 469 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 528
Query: 506 IVWGLFSLSTSFTKI*DWGK*QQSSFLRWSTTTVVIVK*CQTYKQLHIDE*CARVSFLFL 327
IVWG + K G+ + L Y L +S ++
Sbjct: 529 IVWGALVAACRLHKNPQLGELAATQLLEIEPENC-------GYNVL--------MSNIYA 573
Query: 326 LVN-----AGVSKTMKDTGIKKALDISSIEVNGSLHKFIMGGRSHPRTKETSEM------ 180
N AGV KTMK G+KK S IEVNG++H+F+MG +SHP+ + +EM
Sbjct: 574 AANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRR 633
Query: 179 ---------------LNFDNEEKEIAPTHHSERLTIASGLISTAPSIPIRIVKNLRVCDD 45
LN D EEKE A T+HSE+L +A GLISTAPS PIRIVKNLRVC+D
Sbjct: 634 KLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCND 693
Query: 44 CHSARKLLSKIFGR 3
CH+A KLLSKI+GR
Sbjct: 694 CHAATKLLSKIYGR 707
Score = 53.5 bits (127), Expect(2) = 8e-06
Identities = 30/105 (28%), Positives = 53/105 (50%)
Frame = -2
Query: 863 IDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLHA 684
++ AR +F+ + RD+ +W AML A C ++A LF Q+ +G++P +T + +L
Sbjct: 309 LEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 368
Query: 683 CSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDM 549
C+ A + G + H + +VE VD + L+DM
Sbjct: 369 CAVAGALDLGKWV-----HSYIDKERVE-----VDCILNTALVDM 403
Score = 22.7 bits (47), Expect(2) = 8e-06
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -1
Query: 897 LVDMYAKCG 871
L+DMYAKCG
Sbjct: 268 LLDMYAKCG 276
>emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 265 bits (676), Expect = 1e-68
Identities = 152/314 (48%), Positives = 191/314 (60%), Gaps = 26/314 (8%)
Frame = -2
Query: 866 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 687
DI+ A +F ++ RDICMWNA++ G AMHG GEEAL++F ++E+ G+KPNDITFIG+LH
Sbjct: 323 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 382
Query: 686 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 507
ACSHA LVT+G LF M H FG+VP++EHYG MVDLLGRAGL+D AHE
Sbjct: 383 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 442
Query: 506 IVWGLFSLSTSFTKI*DWGK*QQSSFLRWSTTTVVIVK*CQTYKQLHIDE*CARVSFLFL 327
IVWG + K G+ + L Y L +S ++
Sbjct: 443 IVWGALVAACRLHKNPQLGELAATQLLEIEPENC-------GYNVL--------MSNIYA 487
Query: 326 LVN-----AGVSKTMKDTGIKKALDISSIEVNGSLHKFIMGGRSHPRTKETSEM------ 180
N AGV KTMK G+KK S IEVNG++H+F+MG +SHP+ + +EM
Sbjct: 488 AANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRR 547
Query: 179 ---------------LNFDNEEKEIAPTHHSERLTIASGLISTAPSIPIRIVKNLRVCDD 45
LN D EEKE A T+HSE+L +A GLISTAPS PIRIVKNLRVC+D
Sbjct: 548 KLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCND 607
Query: 44 CHSARKLLSKIFGR 3
CH+A KLLSKI+GR
Sbjct: 608 CHAATKLLSKIYGR 621
>emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 265 bits (676), Expect = 1e-68
Identities = 152/314 (48%), Positives = 191/314 (60%), Gaps = 26/314 (8%)
Frame = -2
Query: 866 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 687
DI+ A +F ++ RDICMWNA++ G AMHG GEEAL++F ++E+ G+KPNDITFIG+LH
Sbjct: 449 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 508
Query: 686 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 507
ACSHA LVT+G LF M H FG+VP++EHYG MVDLLGRAGL+D AHE
Sbjct: 509 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 568
Query: 506 IVWGLFSLSTSFTKI*DWGK*QQSSFLRWSTTTVVIVK*CQTYKQLHIDE*CARVSFLFL 327
IVWG + K G+ + L Y L +S ++
Sbjct: 569 IVWGALVAACRLHKNPQLGELAATQLLEIEPENC-------GYNVL--------MSNIYA 613
Query: 326 LVN-----AGVSKTMKDTGIKKALDISSIEVNGSLHKFIMGGRSHPRTKETSEM------ 180
N AGV KTMK G+KK S IEVNG++H+F+MG +SHP+ + +EM
Sbjct: 614 AANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRR 673
Query: 179 ---------------LNFDNEEKEIAPTHHSERLTIASGLISTAPSIPIRIVKNLRVCDD 45
LN D EEKE A T+HSE+L +A GLISTAPS PIRIVKNLRVC+D
Sbjct: 674 KLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCND 733
Query: 44 CHSARKLLSKIFGR 3
CH+A KLLSKI+GR
Sbjct: 734 CHAATKLLSKIYGR 747
Score = 55.1 bits (131), Expect(2) = 4e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Frame = -2
Query: 866 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 687
DI AR +F+ + RD+ +W AML A C ++A LF Q+ +G++P +T + +L
Sbjct: 348 DIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 407
Query: 686 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDM 549
C+ A + G + H + +VE VD + L+DM
Sbjct: 408 LCAVAGALDLGKWV-----HSYIDKERVE-----VDCILNTALVDM 443
Score = 22.3 bits (46), Expect(2) = 4e-06
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 897 LVDMYAKCGD 868
LVDMY KC D
Sbjct: 339 LVDMYGKCSD 348
>ref|XP_002319650.1| predicted protein [Populus trichocarpa] gi|222858026|gb|EEE95573.1|
predicted protein [Populus trichocarpa]
Length = 705
Score = 251 bits (640), Expect(2) = 7e-66
Identities = 144/314 (45%), Positives = 182/314 (57%), Gaps = 26/314 (8%)
Frame = -2
Query: 866 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 687
DI A+ +F+++ RDIC WN M+ G MHG GE+AL+LF ++E G+KPNDITFIG LH
Sbjct: 383 DISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALH 442
Query: 686 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 507
ACSHA LV +G LF M H+FG+VPKVEHYG MVDLLGRAGL+D A++
Sbjct: 443 ACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNI 502
Query: 506 IVWGLFSLSTSFTKI*DWGK*QQSSFLRWSTTTVVIVK*CQTYKQLHIDE*CARVSFLFL 327
+WG + K + G+ L YK L +S ++
Sbjct: 503 AIWGAMLAACKIHKNSNMGELAARELLALEPQNC-------GYKVL--------MSNIYA 547
Query: 326 LVN-----AGVSKTMKDTGIKKALDISSIEVNGSLHKFIMGGRSHPRTKETSEML----- 177
N AG+ K +KDTGIKK +SSIEVNG +H F MG +HP ++ SEML
Sbjct: 548 AANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSK 607
Query: 176 ----------------NFDNEEKEIAPTHHSERLTIASGLISTAPSIPIRIVKNLRVCDD 45
N D EEKE A +HSE+L +A GLISTAP PIR+VKNLR+CDD
Sbjct: 608 KLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDD 667
Query: 44 CHSARKLLSKIFGR 3
CH+ KLLSKI+ R
Sbjct: 668 CHTVTKLLSKIYKR 681
Score = 26.9 bits (58), Expect(2) = 7e-66
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 912 IYRKQLVDMYAKCGD 868
I + L+DMYAKCGD
Sbjct: 369 ILKTALIDMYAKCGD 383
Score = 54.3 bits (129), Expect(2) = 4e-06
Identities = 30/106 (28%), Positives = 52/106 (49%)
Frame = -2
Query: 866 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 687
+I AR IF+ +D+ W AM+ A C + A +LF Q+ G++PN++T + +L
Sbjct: 282 EIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLS 341
Query: 686 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDM 549
C+ + G H + ++ G VD++ + LIDM
Sbjct: 342 LCAVNGALDMGKWF-----HAY-----IDKQGVEVDVILKTALIDM 377
Score = 23.1 bits (48), Expect(2) = 4e-06
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 897 LVDMYAKCGD 868
LVDMY KCG+
Sbjct: 273 LVDMYGKCGE 282
>ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
[Glycine max]
Length = 801
Score = 251 bits (641), Expect(2) = 4e-65
Identities = 148/314 (47%), Positives = 179/314 (57%), Gaps = 26/314 (8%)
Frame = -2
Query: 866 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 687
DID A +F ++ RDI MWNAM+ G AMHG GE ALELF ++E G+ PNDITFIG LH
Sbjct: 479 DIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALH 538
Query: 686 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 507
ACSH+ L+ +G LF M HEFG PKVEHYG MVDLLGRAGL+D AHE
Sbjct: 539 ACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNI 598
Query: 506 IVWGLFSLSTSFTKI*DWGK*QQSSFLRWSTTTVVIVK*CQTYKQLHIDE*CARVSFLFL 327
V+G F + K G+ FL + H +S ++
Sbjct: 599 AVFGSFLAACKLHKNIKLGEWAAKQFLS---------------LEPHKSGYNVLMSNIYA 643
Query: 326 LVN-----AGVSKTMKDTGIKKALDISSIEVNGSLHKFIMGGRSHPRTKETSEML----- 177
N A + + MKD GI K +SSIEVNG LH+FIMG R HP K+ EM+
Sbjct: 644 SANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMRE 703
Query: 176 ----------------NFDNEEKEIAPTHHSERLTIASGLISTAPSIPIRIVKNLRVCDD 45
N D E+K A +HSE+L +A GLISTAP +PIRIVKNLRVCDD
Sbjct: 704 KLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDD 763
Query: 44 CHSARKLLSKIFGR 3
CH+A KLLSKI+GR
Sbjct: 764 CHNATKLLSKIYGR 777
Score = 24.3 bits (51), Expect(2) = 4e-65
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 912 IYRKQLVDMYAKCGD 868
I + VDMYA CGD
Sbjct: 465 ILKTSFVDMYANCGD 479
Score = 58.2 bits (139), Expect(2) = 4e-07
Identities = 32/108 (29%), Positives = 56/108 (51%)
Frame = -2
Query: 866 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 687
D+ AR +F+ +D+ MW+AM+ A + C +EA ++F + GI+PN+ T + +L
Sbjct: 378 DVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLM 437
Query: 686 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAH 543
C+ A + G + S + + G+ + VD+ G ID AH
Sbjct: 438 ICAKAGSLEMGKWIHSYI-DKQGIKGDMILKTSFVDMYANCGDIDTAH 484
Score = 22.7 bits (47), Expect(2) = 4e-07
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 894 VDMYAKCGD 868
+DMY KCGD
Sbjct: 370 IDMYGKCGD 378