BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006868
         (1462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002870349.1| hypothetical protein ARALYDRAFT_915515 [Arab...    69   2e-09
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    61   4e-09
ref|XP_002527480.1| conserved hypothetical protein [Ricinus comm...    55   7e-09
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    64   1e-07
gb|ABR18789.1| class S F-box protein [Nicotiana alata]                 50   9e-07

>ref|XP_002870349.1| hypothetical protein ARALYDRAFT_915515 [Arabidopsis lyrata subsp.
            lyrata] gi|297316185|gb|EFH46608.1| hypothetical protein
            ARALYDRAFT_915515 [Arabidopsis lyrata subsp. lyrata]
          Length = 405

 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 75/282 (26%), Positives = 122/282 (43%), Gaps = 20/282 (7%)
 Frame = -2

Query: 1236 WICFEVVGTVNGLICFSPETIDYLPSPYYICNPIT*DYVIAPDSPNIRYGH-----IASA 1072
            W+ F   G+ NGL+C +      L +  ++ NP T +    PD P            +  
Sbjct: 143  WVRF--FGSSNGLLCMANIL---LLNDVFLYNPTTGESKKLPDLPESLRSKSTKTLFSYG 197

Query: 1071 FGFDSVGNQYKWLFEMWE*GRSI*SGVR*LETDKHKYSLC*LHE-----LVSRTLNGCLH 907
            FGFDS+ N +K +  +      + S    L+TD  +  +C +         S  LNG +H
Sbjct: 198  FGFDSLNNDFKVVKFIDGNDNYVYS----LKTDSWR-RICNMPYKDVCFFTSVELNGAIH 252

Query: 906  WIASSTVNDKFATVILSLNVSTEEFSIIQMPSNINGLEFSCYY-----ELTVLREHLCVT 742
            WI+     +    V+ + +++TE+F ++ +P     L   C +     ++ +L+  LCV 
Sbjct: 253  WISIPRRGETSQKVVTAFDLTTEKFRVMSLPD----LAEECEHIYPKSKVGILKGRLCVV 308

Query: 741  FPDSMGYNGETWVMNEYGKLGSWAKENVFIQELSLRRGHEVMELSNNELFMIGKSHGLGY 562
            +   M  +   WVMNEYG   SW+K  +     S +    +    NNE  ++     L  
Sbjct: 309  Y-FCMKIHDVIWVMNEYGLESSWSKIRI---SRSYKHMKPLCSTENNEEVLLVLDGHLVL 364

Query: 561  YNPEKKTFDNILVLGVNGWEVGNAEFQIFLTG-----SLLSP 451
            YN E+ T  N+ + GV        EF   L G     SL+SP
Sbjct: 365  YNFERNTRKNLKIRGV--------EFDKSLLGNTYVESLISP 398


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
            gi|222854763|gb|EEE92310.1| f-box family protein [Populus
            trichocarpa]
          Length = 396

 Score = 60.8 bits (146), Expect(2) = 4e-09
 Identities = 68/246 (27%), Positives = 102/246 (41%), Gaps = 22/246 (8%)
 Frame = -2

Query: 1338 YLIDPESFLKSKTCPTAYNLELKEFKENFTAPNGWICFEVVGTVNGLICFSPETIDYLPS 1159
            + +D E  L    C T     LKE        N  I  +V+G+VNGL+C S    D    
Sbjct: 66   HYMDFEQNLVLNDCVT-----LKELNHPLMCYNHGI--KVLGSVNGLLCISNVVDDIA-- 116

Query: 1158 PYYICNPIT*DYVIAPDSPNI--RYGHIASA------FGFDSVGNQYKWLFEMWE*GRSI 1003
               + NP T  + + P  P    RY    S       FG+DSV + YK L  + + G   
Sbjct: 117  ---VWNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYK-LVRIAQFGGG- 171

Query: 1002 *SGVR*LETDKHKYSL-------------C*LHELVSRTL-NGCLHWIASSTVNDKFATV 865
              G R  E++   YSL             C  +   +    NG LHW+         A +
Sbjct: 172  --GKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGENPESNVANI 229

Query: 864  ILSLNVSTEEFSIIQMPSNINGLEFSCYYELTVLREHLCVTFPDSMGYNGETWVMNEYGK 685
            +++L++  E++  +  P      + + Y +L VLR  LC    + +G   + W+M EYG 
Sbjct: 230  VVALDLGVEDYREVLQPEY---KDKNFYIDLGVLRGCLCF-LANFLGERVDVWMMKEYGV 285

Query: 684  LGSWAK 667
              SW K
Sbjct: 286  KESWTK 291



 Score = 27.7 bits (60), Expect(2) = 4e-09
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 1462 LPLKTISQCKWVSKTWYAFIQHPSF 1388
            LP K +  C+ VSK W A I  P+F
Sbjct: 16   LPAKELLCCRSVSKPWCALIDGPNF 40


>ref|XP_002527480.1| conserved hypothetical protein [Ricinus communis]
            gi|223533120|gb|EEF34878.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 379

 Score = 55.5 bits (132), Expect(2) = 7e-09
 Identities = 75/287 (26%), Positives = 120/287 (41%), Gaps = 33/287 (11%)
 Frame = -2

Query: 1269 EFKE-NFTAPNGWICFEVVGTVNGLICFSPETIDYLPSPYYICNPIT*DYVIAP-DSPNI 1096
            E++E +F   + W  FE+VG+ NG+IC + +   ++     + NP     V  P    + 
Sbjct: 84   EYQELDFPLESSWDYFEIVGSCNGIICLT-DNHSHILKRIVLWNPSIGLSVTLPLQRISY 142

Query: 1095 RYGHIASAFGFDSVGNQYKWL-----------------FEMWE*GRS---I*SGVR*LET 976
            +  ++   FGFDS  N YK +                  E++E  R    I +       
Sbjct: 143  KVSNVVLGFGFDSRTNDYKVIRIVYYSTNDDSLMVPPEVEIFELSRGTWRINNSASVPAY 202

Query: 975  DKHKYSLC*LHELVSRTLNGCLHWIASSTVNDKFATVILSLNVSTEEFSIIQMPSNINGL 796
            D  KYS     ++V   L G +HW+   +  +    V +   V  EEF   +MP  I+G 
Sbjct: 203  DVSKYS----SQIV---LEGAIHWVGYYSPRELTIAVYV---VHDEEFKEFRMPDEISG- 251

Query: 795  EFSCYYELTVLREHLCVTFPDSMGYNGE----------TWVMNEYGKLGSWAKENVFIQE 646
              +    L+V+   LC      + Y              WVMNEYG   SW K  +F   
Sbjct: 252  --TALQHLSVM---LCCQLLSIIQYKKRGSRLCYESCCIWVMNEYGVHDSWTK--LFNVV 304

Query: 645  LSLRRGHEVMELSNN-ELFMIGKSHGLGYYNPEKKTFDNILVLGVNG 508
            ++   G +V+ L NN E+ ++G    L  Y+P    +     LG++G
Sbjct: 305  VTGGIG-KVLGLRNNVEVLLVGGQGELISYDP---WYQRSKSLGISG 347



 Score = 32.3 bits (72), Expect(2) = 7e-09
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 1462 LPLKTISQCKWVSKTWYAFIQHPSF--THSSSLCCFNRTLHKVLFD*SR 1322
            LP+K + +C+ + KTWY+ I + +F  THS      N   + +L   SR
Sbjct: 17   LPVKQLLRCRCICKTWYSLISNHNFISTHSRYTIDSNNNNYLILRHYSR 65


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
            gi|147785390|emb|CAN68678.1| hypothetical protein
            VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 80/294 (27%), Positives = 117/294 (39%), Gaps = 38/294 (12%)
 Frame = -2

Query: 1227 FEVVGTVNGLICFSPETIDYLPSPYYICNPIT*DYVIAPDSPNIRYGHIASAFGFDSVGN 1048
            FEVVG+ NGL+C +           Y+ NP T D+   P S       +   FG+  +  
Sbjct: 122  FEVVGSCNGLLCLADSLFK---DAVYVHNPFTRDFKQLPKSLQYPDQEVVFGFGYHPMTE 178

Query: 1047 QYKWLFEMW-E*GRSI*SGVR*LETDKHKYSLC*LHELVSRTL----------------N 919
             YK +  ++   G    S  R +   + +  +  L     R+L                N
Sbjct: 179  VYKVVKVVYYRNGYGGFSRFRRITCSQSEVQVLTLGSPTWRSLGKVSYQLDRWPSEALVN 238

Query: 918  GCLHWIASSTVNDKFAT-VILSLNVSTEEFSIIQMPSNINGLEFSCYYELTVLREHLCVT 742
            G LHW+   T   ++ T  I+S +++ E+F  I  P +  GL   C Y L VL   L   
Sbjct: 239  GRLHWV---TRPRRYVTRFIVSFDLADEQFREIPKP-DCGGLS-RCNYHLLVLGGCLSAA 293

Query: 741  FPDSMGYNGETWVMNEYGKLGSWAKE-NVFIQ-----ELSLRRGHEVME----------- 613
               S G   E WVM EY    SW KE N+        +  + R H +             
Sbjct: 294  VHRSNG-KLEVWVMKEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLL 352

Query: 612  --LSNNELFMIGKSHGLGYYNPEKKTFDNILVLGVNGWEVGNAEFQIFL-TGSL 460
              L N E+ +  K   L  YNPE+  F ++ + G+  W      FQ F+  GSL
Sbjct: 353  CLLKNGEILLEYKGRVLVSYNPERGKFKDLTLKGLPNW------FQTFVHVGSL 400


>gb|ABR18789.1| class S F-box protein [Nicotiana alata]
          Length = 394

 Score = 50.4 bits (119), Expect(2) = 9e-07
 Identities = 57/230 (24%), Positives = 87/230 (37%), Gaps = 34/230 (14%)
 Frame = -2

Query: 1251 TAPNGWICFEVVGTVNGLICFSPETIDYLPSPYYICNPIT*DYVIAPDSP-----NIRYG 1087
            T  +   C  ++G  NGLI  + +  + L       NP T +Y +   SP          
Sbjct: 107  TTSSACTCHRIIGPCNGLIFLTDKLNNVL------FNPTTRNYRLLTPSPFGCPLGFHRS 160

Query: 1086 HIASAFGFDSVGNQYK--------------------WLFEMWE*GRSI*SGVR*LETDKH 967
                 FGFD + N YK                    W  E++E            E D+ 
Sbjct: 161  INCVGFGFDLIVNDYKIVRISEVRGEPPFYCDSMREWKVEVYELRTDSWR-----ELDQV 215

Query: 966  KYSLC*LH--ELVSRTLNGCLHWIASSTVNDKFATVILSLNVSTEEFSIIQMPSNINGLE 793
               L  +H         +G  HW  ++        VIL  ++STE F  ++MP+  +  +
Sbjct: 216  NLQLPYVHWNPCSDMFYSGASHWFGNANT-----VVILCFDLSTETFRNMKMPNTCHSRD 270

Query: 792  FSCYYELTVLREHL---CVTFP----DSMGYNGETWVMNEYGKLGSWAKE 664
              C Y L VL E+L   C  +P    D +    + W+M +YG   SW K+
Sbjct: 271  EKC-YGLVVLNEYLTLICYPYPGKVIDPLKDFMDIWMMKDYGVNESWIKK 319



 Score = 30.0 bits (66), Expect(2) = 9e-07
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query: 1462 LPLKTISQCKWVSKTWYAFIQHPSF--THSSSLCCFNRTLHKVLFD*SRKFS*V*NVPNR 1289
            L +K++ + K VSKTWY  IQ  +F   H S     N  L  VLF  S K       PNR
Sbjct: 25   LQVKSLIRFKCVSKTWYILIQSSTFIYLHLSHTTTSNDEL--VLFKRSYK-----EEPNR 77

Query: 1288 LQS 1280
             +S
Sbjct: 78   FKS 80