BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006865
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...    98   7e-19
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...    97   2e-18
ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...    94   2e-17
emb|CBI35694.3| unnamed protein product [Vitis vinifera]               94   2e-17
gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryz...    93   2e-17

>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score = 98.2 bits (243), Expect = 7e-19
 Identities = 50/72 (69%), Positives = 57/72 (79%), Gaps = 3/72 (4%)
 Frame = -3

Query: 542 KLVDTNAPVDQGTVSNSLHRFQLEISL---DNFEAVAGFRKGYMARKQRIEATIGRKVPE 372
           KLVDTNAPVD GT SNSLH F+L ISL     F    G + G++ARKQRIEAT+GR+VPE
Sbjct: 579 KLVDTNAPVDGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPE 638

Query: 371 NDGKRHALTLTV 336
           NDG+RHALTLTV
Sbjct: 639 NDGRRHALTLTV 650


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
           gi|222848649|gb|EEE86196.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 662

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 49/72 (68%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
 Frame = -3

Query: 542 KLVDTNAPVDQGTVSNSLHRFQLEISL---DNFEAVAGFRKGYMARKQRIEATIGRKVPE 372
           KLVDT+APVDQGT SN++H F+LEISL     F    G + G+MARKQRIEAT+G +VPE
Sbjct: 581 KLVDTSAPVDQGTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPE 640

Query: 371 NDGKRHALTLTV 336
           NDG+RHALTLTV
Sbjct: 641 NDGRRHALTLTV 652


>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 49/72 (68%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
 Frame = -3

Query: 542 KLVDTNAPVDQGTVSNSLHRFQLEISL---DNFEAVAGFRKGYMARKQRIEATIGRKVPE 372
           KLVDT+APVDQGT SN+LH F+L ISL     F    G   G+MARKQRIEAT+G +VPE
Sbjct: 412 KLVDTSAPVDQGTESNTLHDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRVPE 471

Query: 371 NDGKRHALTLTV 336
           NDG+RHALTLTV
Sbjct: 472 NDGRRHALTLTV 483


>emb|CBI35694.3| unnamed protein product [Vitis vinifera]
          Length = 205

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 49/72 (68%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
 Frame = -3

Query: 542 KLVDTNAPVDQGTVSNSLHRFQLEISL---DNFEAVAGFRKGYMARKQRIEATIGRKVPE 372
           KLVDT+APVDQGT SN+LH F+L ISL     F    G   G+MARKQRIEAT+G +VPE
Sbjct: 134 KLVDTSAPVDQGTESNTLHDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRVPE 193

Query: 371 NDGKRHALTLTV 336
           NDG+RHALTLTV
Sbjct: 194 NDGRRHALTLTV 205


>gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryza sativa Japonica
           Group] gi|77556035|gb|ABA98831.1| Plus-3 domain
           containing protein, expressed [Oryza sativa Japonica
           Group] gi|215697432|dbj|BAG91426.1| unnamed protein
           product [Oryza sativa Japonica Group]
          Length = 522

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 49/72 (68%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
 Frame = -3

Query: 542 KLVDTNAPVDQGTVSNSLHRFQLEISL---DNFEAVAGFRKGYMARKQRIEATIGRKVPE 372
           KLVDTNAPVD GT SN LH F+L ISL   + F    G   GYMARKQ+IEAT+G KVP+
Sbjct: 441 KLVDTNAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPD 500

Query: 371 NDGKRHALTLTV 336
           NDG+RHALTLTV
Sbjct: 501 NDGRRHALTLTV 512