BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006862
         (1343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003525721.1| PREDICTED: replication factor C subunit 2-li...   603   e-170
ref|XP_002509739.1| replication factor C / DNA polymerase III ga...   602   e-170
ref|XP_003549857.1| PREDICTED: replication factor C subunit 2-li...   600   e-169
ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-li...   599   e-169
gb|AFK40126.1| unknown [Medicago truncatula]                          594   e-167

>ref|XP_003525721.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
          Length = 331

 Score =  603 bits (1555), Expect = e-170
 Identities = 298/322 (92%), Positives = 318/322 (98%), Gaps = 1/322 (0%)
 Frame = +3

Query: 129  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 308
            Y++PWVEKYRP+KVAD+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 10   YDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 69

Query: 309  LG-PNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQ 485
            LG PNCKEAVLELNAS+DRGIDVVRNKIKMFAQKKVTL PGRHKIVILDEADSMT+GAQQ
Sbjct: 70   LGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQ 129

Query: 486  ALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVP 665
            ALRRTMEIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRLSDQEILGRLM+V+QAEKVP
Sbjct: 130  ALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVP 189

Query: 666  YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILE 845
            YVPEGLEAIIFTADGDMRQALNNLQATYSGF+FVNQ NVFKVCDQPHPLHVKNMVRN++E
Sbjct: 190  YVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIE 249

Query: 846  GNFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 1025
            GNFD+AC+GLKQLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG
Sbjct: 250  GNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 309

Query: 1026 SLLQLCGLLAKLSLVRETAKAV 1091
            S LQLCGLLAKLSLVRETAKAV
Sbjct: 310  SYLQLCGLLAKLSLVRETAKAV 331


>ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223549638|gb|EEF51126.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 333

 Score =  602 bits (1553), Expect = e-170
 Identities = 295/320 (92%), Positives = 316/320 (98%)
 Frame = +3

Query: 129  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 308
            Y++PWVEKYRP+K+ D+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 13   YDVPWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72

Query: 309  LGPNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQA 488
            LGPN KEAVLELNAS+DRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADSMTSGAQQA
Sbjct: 73   LGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132

Query: 489  LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVPY 668
            LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRL+IV+QAEKVPY
Sbjct: 133  LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQAEKVPY 192

Query: 669  VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILEG 848
            VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR+++EG
Sbjct: 193  VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRHVMEG 252

Query: 849  NFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 1028
             +DDAC+GLKQLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS
Sbjct: 253  KYDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 312

Query: 1029 LLQLCGLLAKLSLVRETAKA 1088
             LQLCGLLAKL+LVR+TA+A
Sbjct: 313  YLQLCGLLAKLALVRDTARA 332


>ref|XP_003549857.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
          Length = 332

 Score =  600 bits (1547), Expect = e-169
 Identities = 297/322 (92%), Positives = 317/322 (98%), Gaps = 1/322 (0%)
 Frame = +3

Query: 129  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 308
            Y++PWVEKYRP+KVAD+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 11   YDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 70

Query: 309  LG-PNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQ 485
            LG PNCKEAVLELNAS+DRGIDVVRNKIKMFAQKKVTL PGRHKIVILDEADSMT+GAQQ
Sbjct: 71   LGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQ 130

Query: 486  ALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVP 665
            ALRRTMEIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRLSDQEILGRLM+V+QAEKVP
Sbjct: 131  ALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVP 190

Query: 666  YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILE 845
            YVPEGLEAIIFTADGDMRQALNNLQATYSGF+FVNQ NVFKVCDQPHPLHVKNMV N++E
Sbjct: 191  YVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVCNVIE 250

Query: 846  GNFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 1025
            GNFD+AC+GLKQLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG
Sbjct: 251  GNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 310

Query: 1026 SLLQLCGLLAKLSLVRETAKAV 1091
            S LQLCGLLAKLSLVRETAKAV
Sbjct: 311  SYLQLCGLLAKLSLVRETAKAV 332


>ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
            gi|449494241|ref|XP_004159490.1| PREDICTED: replication
            factor C subunit 2-like [Cucumis sativus]
          Length = 331

 Score =  599 bits (1544), Expect = e-169
 Identities = 294/320 (91%), Positives = 313/320 (97%)
 Frame = +3

Query: 129  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 308
            Y+IPWVEKYRP KV D+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 11   YDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 70

Query: 309  LGPNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQA 488
            LGPN KE VLELNAS+DRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADSMT+GAQQA
Sbjct: 71   LGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQA 130

Query: 489  LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVPY 668
            LRRTMEIYSN+TRFALACNTSSKIIEPIQSRCA+VRFSRL+DQEILGRLM+VIQAEKVPY
Sbjct: 131  LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPY 190

Query: 669  VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILEG 848
            VPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQ+NVFKVCDQPHPLHVKN+VRN+LEG
Sbjct: 191  VPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEG 250

Query: 849  NFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 1028
             FDDAC GL+QLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS
Sbjct: 251  KFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 310

Query: 1029 LLQLCGLLAKLSLVRETAKA 1088
             LQLCGLLAKLS+VRETAKA
Sbjct: 311  YLQLCGLLAKLSMVRETAKA 330


>gb|AFK40126.1| unknown [Medicago truncatula]
          Length = 333

 Score =  594 bits (1531), Expect = e-167
 Identities = 289/320 (90%), Positives = 313/320 (97%)
 Frame = +3

Query: 129  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 308
            Y++PWVEKYRP+KV D+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 13   YDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72

Query: 309  LGPNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQA 488
            LGPN +EAVLELNAS+DRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADSMTSGAQQA
Sbjct: 73   LGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132

Query: 489  LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVPY 668
            LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCA+VRFSRLSDQEILGRLM+V+QAEKVPY
Sbjct: 133  LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPY 192

Query: 669  VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILEG 848
            VPEGLEAIIFTADGDMRQ LNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKNMVRN++EG
Sbjct: 193  VPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEG 252

Query: 849  NFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 1028
            NFD+AC+GLKQLY+LGYSPTDIITTLFRIIK+YDMAEYLKLEFMKETGFAHMRICDGVGS
Sbjct: 253  NFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGS 312

Query: 1029 LLQLCGLLAKLSLVRETAKA 1088
             LQ+CGLLAK +LVR+TA A
Sbjct: 313  YLQMCGLLAKFALVRDTANA 332