BLASTX nr result
ID: Coptis25_contig00006859
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00006859
(1972 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-... 608 e-171
emb|CBI40014.3| unnamed protein product [Vitis vinifera] 605 e-170
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ... 548 e-153
ref|XP_002325455.1| predicted protein [Populus trichocarpa] gi|2... 544 e-152
ref|XP_002319746.1| predicted protein [Populus trichocarpa] gi|2... 540 e-151
>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 608 bits (1569), Expect = e-171
Identities = 330/579 (56%), Positives = 388/579 (67%), Gaps = 4/579 (0%)
Frame = -1
Query: 1924 MACLLPQFKCPXXXXXXXXXXXXXXXFLKTRQPVCFRVQCSL----PMTTTMATTVLNVE 1757
M+CLLPQFKCP K R+ + FRVQC+L P +T T VL++E
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLDIE 60
Query: 1756 KXXXXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXXXX 1577
K SVAA RP TY G +GPP + NF++TL E + T
Sbjct: 61 KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVA 120
Query: 1576 XXXXXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKRTMVVDMERVATLGLNSLG 1397
+ G SA S+ K FLS D ++ +R + ER+ LG +S+G
Sbjct: 121 LAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG-DSVG 179
Query: 1396 VKDIKEEENSVELSTEDFENLDPTDGXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXX 1217
+ + NS++ TED ++L+PT SI
Sbjct: 180 AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 239
Query: 1216 XXXXXXXXXXXXXXXXXXXVQDVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQDLLKL 1037
+Q+VDYSDPLRYLRG EGIQDLLKL
Sbjct: 240 SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 299
Query: 1036 ESLHDELAERCGSEPTFAQWAAAAGTDQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNY 857
E L ++L ER G +PTFAQWAAAAG DQ+TLR+R N+GI+CKDKMIKSNIRLVISIAKNY
Sbjct: 300 EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 359
Query: 856 QGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 677
QGAGMN+QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 360 QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 419
Query: 676 HMVEATYRVREAKKQLYNENGRHPNDKEVAEATGLTMKRLSAVMLTPKAPRSLDQKIGFN 497
HMVEATYRV+EA+KQLY+ENGRHPN++EVAEATGL+MKRL+AV+LTPKAPRSLDQKIG N
Sbjct: 420 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 479
Query: 496 LNMKPSEVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQ 317
N+KPSEVIADP+AETAE++LIKQFM++DL+KVLNSLNPRE QV+RWR+GLEDGR KTLQ
Sbjct: 480 QNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQ 539
Query: 316 EIGELMGVSRERVRQIESCAFRKLKNKKRTKHLQQYIVS 200
EIGELMGVSRER+RQIESCAFRKLKNK+RTKHLQQY+VS
Sbjct: 540 EIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 605 bits (1560), Expect = e-170
Identities = 330/579 (56%), Positives = 388/579 (67%), Gaps = 4/579 (0%)
Frame = -1
Query: 1924 MACLLPQFKCPXXXXXXXXXXXXXXXFLKTRQPVCFRVQCSL----PMTTTMATTVLNVE 1757
M+CLLPQFKCP K R+ + FRVQC+L P +T T VL++E
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLHILS---KNREAIYFRVQCALSTTSPPLSTSTTAVLDIE 57
Query: 1756 KXXXXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXXXX 1577
K SVAA RP TY G +GPP + NF++TL E + T
Sbjct: 58 KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVA 117
Query: 1576 XXXXXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKRTMVVDMERVATLGLNSLG 1397
+ G SA S+ K FLS D ++ +R + ER+ LG +S+G
Sbjct: 118 LAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG-DSVG 176
Query: 1396 VKDIKEEENSVELSTEDFENLDPTDGXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXX 1217
+ + NS++ TED ++L+PT SI
Sbjct: 177 AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 236
Query: 1216 XXXXXXXXXXXXXXXXXXXVQDVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQDLLKL 1037
+Q+VDYSDPLRYLRG EGIQDLLKL
Sbjct: 237 SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 296
Query: 1036 ESLHDELAERCGSEPTFAQWAAAAGTDQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNY 857
E L ++L ER G +PTFAQWAAAAG DQ+TLR+R N+GI+CKDKMIKSNIRLVISIAKNY
Sbjct: 297 EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 356
Query: 856 QGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 677
QGAGMN+QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 357 QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416
Query: 676 HMVEATYRVREAKKQLYNENGRHPNDKEVAEATGLTMKRLSAVMLTPKAPRSLDQKIGFN 497
HMVEATYRV+EA+KQLY+ENGRHPN++EVAEATGL+MKRL+AV+LTPKAPRSLDQKIG N
Sbjct: 417 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 476
Query: 496 LNMKPSEVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQ 317
N+KPSEVIADP+AETAE++LIKQFM++DL+KVLNSLNPRE QV+RWR+GLEDGR KTLQ
Sbjct: 477 QNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQ 536
Query: 316 EIGELMGVSRERVRQIESCAFRKLKNKKRTKHLQQYIVS 200
EIGELMGVSRER+RQIESCAFRKLKNK+RTKHLQQY+VS
Sbjct: 537 EIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575
>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
rpoD1, putative [Ricinus communis]
Length = 569
Score = 548 bits (1413), Expect = e-153
Identities = 312/581 (53%), Positives = 370/581 (63%), Gaps = 6/581 (1%)
Frame = -1
Query: 1924 MACLLPQFKCPXXXXXXXXXXXXXXXF-----LKTRQPVCFRVQCSLPMTT-TMATTVLN 1763
M+CLLPQFKC K+R+P+ +R QC L T+ + +T VL+
Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLD 61
Query: 1762 VEKXXXXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXX 1583
+EK S+A P TY F STL E + T
Sbjct: 62 LEKLRLPSFEAPSDSIAPNSPWTYA---------TFGSTLATETLITSDEAVIAAAAAEA 112
Query: 1582 XXXXXXXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKRTMVVDMERVATLGLNS 1403
L+ + SA ++ K S + + ++ + ER +G +S
Sbjct: 113 VALARAAVKVAKDAALLVKNFPSAETESK---LTSPSTIDASRWPQFTETERARIIG-DS 168
Query: 1402 LGVKDIKEEENSVELSTEDFENLDPTDGXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXX 1223
+ + EE+S++ S ++ + L+ T IA
Sbjct: 169 VATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVE 228
Query: 1222 XXXXXXXXXXXXXXXXXXXXXVQDVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQDLL 1043
+Q+VDYSDPLRYLRG IQDLL
Sbjct: 229 KAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLL 288
Query: 1042 KLESLHDELAERCGSEPTFAQWAAAAGTDQRTLRKRLNHGIQCKDKMIKSNIRLVISIAK 863
KLE L +ELAER G +PTFAQWAAAAG DQRTLRKR+NHG CKDKMIKSNIRLVISIAK
Sbjct: 289 KLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAK 348
Query: 862 NYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 683
NYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 349 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 408
Query: 682 PFHMVEATYRVREAKKQLYNENGRHPNDKEVAEATGLTMKRLSAVMLTPKAPRSLDQKIG 503
PFHMVEATYRV+EA+KQLY+ENGRHP+D+EVAEA GL+MKRLSAV+LTPKAPRSLDQKIG
Sbjct: 409 PFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIG 468
Query: 502 FNLNMKPSEVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKT 323
N+++KPSEVIADPEAETAE++L+KQFMKQDL+KVLN+LNPRE QVVRWRFGLEDGRMKT
Sbjct: 469 MNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKT 528
Query: 322 LQEIGELMGVSRERVRQIESCAFRKLKNKKRTKHLQQYIVS 200
LQEIGE+MGVSRER+RQIES AFRKLKNKKRTK L+QY+++
Sbjct: 529 LQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
>ref|XP_002325455.1| predicted protein [Populus trichocarpa] gi|222862330|gb|EEE99836.1|
predicted protein [Populus trichocarpa]
Length = 564
Score = 544 bits (1402), Expect = e-152
Identities = 308/576 (53%), Positives = 364/576 (63%), Gaps = 1/576 (0%)
Frame = -1
Query: 1924 MACLLPQFKCPXXXXXXXXXXXXXXXFLKTRQPVCFRVQCSLPMTT-TMATTVLNVEKXX 1748
M+CLLPQFKC +P CFR QC+L + + +T VLN+EK
Sbjct: 1 MSCLLPQFKCQPDSFSIH----------SNGEPFCFRAQCALSSASPSTSTAVLNLEKLR 50
Query: 1747 XXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXXXXXXX 1568
S+AA RP TY G IGPP + F ++L E +
Sbjct: 51 LPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAAAEAVALAR 110
Query: 1567 XXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKRTMVVDMERVATLGLNSLGVKD 1388
M + S N++ K P S D + +++ ER +G+ S +
Sbjct: 111 AAVKVAKDAAEMAKNYCSVNTETKIP-IASTADSFSSMWSLLTGKERADIIGV-SFSAET 168
Query: 1387 IKEEENSVELSTEDFENLDPTDGXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXX 1208
EE S + TE+ + PT SI
Sbjct: 169 GLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAAEKAAAN 228
Query: 1207 XXXXXXXXXXXXXXXXVQDVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQDLLKLESL 1028
VQ+VD SDPLR+ RG EGIQDLLKLE +
Sbjct: 229 FVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERI 288
Query: 1027 HDELAERCGSEPTFAQWAAAAGTDQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNYQGA 848
+EL ER G +PTFAQWAAAA DQ TLRKRLN+ I CKDKMIKSNIRLVISIAKNYQGA
Sbjct: 289 EEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGA 348
Query: 847 GMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 668
GMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWI+QAVR+SLSDQSRTIRLPFHMV
Sbjct: 349 GMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMV 408
Query: 667 EATYRVREAKKQLYNENGRHPNDKEVAEATGLTMKRLSAVMLTPKAPRSLDQKIGFNLNM 488
+ATYRV+EA+KQ Y+ENGRHP+DKEVAEATGL+MKRLSAV+LTPKAPRSLDQK+GFN+++
Sbjct: 409 DATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDL 468
Query: 487 KPSEVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIG 308
K SEV ADPEAETAED+L+K+FMK+DL++VL SL+PRENQV+RWRFG+EDGRMKTLQEIG
Sbjct: 469 KLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIG 528
Query: 307 ELMGVSRERVRQIESCAFRKLKNKKRTKHLQQYIVS 200
ELMGVSRER+RQIE AFRKLKNK RTK L+QY+VS
Sbjct: 529 ELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564
>ref|XP_002319746.1| predicted protein [Populus trichocarpa] gi|222858122|gb|EEE95669.1|
predicted protein [Populus trichocarpa]
Length = 567
Score = 540 bits (1392), Expect = e-151
Identities = 306/575 (53%), Positives = 362/575 (62%)
Frame = -1
Query: 1924 MACLLPQFKCPXXXXXXXXXXXXXXXFLKTRQPVCFRVQCSLPMTTTMATTVLNVEKXXX 1745
M+CLLPQFKC T+ P C S +T VL++EK
Sbjct: 1 MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLPQCVLSSAS------PSTAVLDLEKLRL 54
Query: 1744 XXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXXXXXXXX 1565
S++A RP TY G IGP + F ++L E +
Sbjct: 55 PSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAVALARA 114
Query: 1564 XXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKRTMVVDMERVATLGLNSLGVKDI 1385
M + S + K P S TD + +++ + ER +G +S+ +
Sbjct: 115 AVKVAKDAAEMAKNYSSMKKETKIP-IASTTDSFSSMWSLLTEKERADIIG-DSVSAETR 172
Query: 1384 KEEENSVELSTEDFENLDPTDGXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXXX 1205
EE SV+ TE+++ L+PT IA
Sbjct: 173 LREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKAAANV 232
Query: 1204 XXXXXXXXXXXXXXXVQDVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQDLLKLESLH 1025
+Q+VD SDPLR+ RG EGIQDLLKLE +
Sbjct: 233 VSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIE 292
Query: 1024 DELAERCGSEPTFAQWAAAAGTDQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNYQGAG 845
+EL ER G EP+FAQWAAAAG DQ TLRKRLN+GI CKDKMIKSN+RLVISIAKNYQG G
Sbjct: 293 EELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTG 352
Query: 844 MNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 665
MNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSD+SRTIRLPFHMV+
Sbjct: 353 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFHMVD 412
Query: 664 ATYRVREAKKQLYNENGRHPNDKEVAEATGLTMKRLSAVMLTPKAPRSLDQKIGFNLNMK 485
ATYRV+EA+KQLY+ENGRHP+DKEVAEA GL+MKRLSAV+LTPKAPRSLDQK+GFN+++K
Sbjct: 413 ATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLK 472
Query: 484 PSEVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIGE 305
SEV ADPEAETAED+L+K+FMK+DL KVL SL+PRENQVVRWRFG+EDGRMKTLQEIGE
Sbjct: 473 LSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGE 532
Query: 304 LMGVSRERVRQIESCAFRKLKNKKRTKHLQQYIVS 200
LMGVSRERVRQIE AFRKLKNK RTK L+QY+V+
Sbjct: 533 LMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567