BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006811
         (1530 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536628.1| PREDICTED: probable splicing factor 3A subun...   493   e-137
ref|XP_003534698.1| PREDICTED: probable splicing factor 3A subun...   473   e-131
ref|XP_002278479.1| PREDICTED: probable splicing factor 3A subun...   467   e-129
emb|CAN75427.1| hypothetical protein VITISV_003301 [Vitis vinifera]   467   e-129
ref|XP_002528507.1| spliceosome associated protein, putative [Ri...   457   e-126

>ref|XP_003536628.1| PREDICTED: probable splicing factor 3A subunit 1-like [Glycine max]
          Length = 801

 Score =  493 bits (1270), Expect = e-137
 Identities = 287/572 (50%), Positives = 350/572 (61%), Gaps = 63/572 (11%)
 Frame = +3

Query: 3    IIKLTAQFVARNGKSLLTGLASREINKPHFQFLKPTNSKYLPFTKYSDVYSKVLMPPMGL 182
            IIKLTAQFVARNGKS LTGL SRE+N P F FLKPT+S +  FT  +D YSKVLMPP GL
Sbjct: 189  IIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGL 248

Query: 183  IDKLR-SVADLATVLEHCLHRLDWERCQEQDKQKAEVEIQQERVQMALIDWHDFYVVETI 359
             +KL+ SV+D+ TVLE C++RL+WER QEQ +QKAE EI+QER+QMA+IDWHDF VVETI
Sbjct: 249  PEKLKKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFAVVETI 308

Query: 360  EFTDDEDAELPPSMTLAEVMSWSNISAMEDQPEVVERGNEAGMXXXXXXXXXXXXGMKAA 539
            +F DDED ELPP MT+ EV+  S ++AME++ ++VE G E  M            GM+AA
Sbjct: 309  DFADDEDEELPPPMTIEEVIRRSKVTAMEEE-DIVEPGKEIEMEMDEEEAQLVEEGMRAA 367

Query: 540  CLEETVWNMSERKAAAPGQPEPPMRIVKSWKRPEDRISAQRNPTKFVASPITGELIPINE 719
             LE+   ++ + +      PEPPMRIVK+WKRPE+RISA+R+ TKFV SPITGELIPI+E
Sbjct: 368  SLEDRD-DVKQNEVRVTEDPEPPMRIVKNWKRPEERISAERDSTKFVVSPITGELIPISE 426

Query: 720  MAEHMRISLIDPKFKEQKDRKMAEIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSN 899
            M+EHMRISLIDPK+KEQK+R  A+IRETTLA DDE+  NIVGLARTRPDIFGTTEEEVSN
Sbjct: 427  MSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSN 486

Query: 900  AVKEVIEKKKDEHPTQVIWDGRTGSTRITANQAMFRNVSEEEHTDAANSKTR-------- 1055
            AVK  IEK  DE P QVIWDG TGS   TANQAM + +  E+  DA N++ +        
Sbjct: 487  AVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQTIGSEDQNDAFNNEAKNLLGPAAP 546

Query: 1056 -----------------------------TIPWVSA----PPRPDLASVHXXXXXXXXX- 1133
                                         ++P   A    PPRP + S+           
Sbjct: 547  PPRPGMPSIRPLPPPPGLALNLPRVPVQYSVPHSGALPMPPPRPMMPSIRPAPPPPMSMN 606

Query: 1134 -----------------AFMNLPDRPLPTSPGSHFTRLGGSRSFTXXXXXXXXXXXXXXX 1262
                               MN    P+P  PGS FT +   R F                
Sbjct: 607  SGQQSVMAGQPHPMHPSIHMNNQGIPIPPPPGSQFTPVPVPRPFVPLSVPPSVMPMMHPP 666

Query: 1263 XXXXXXXXXXXXXXXXXXXXXXS--KRRRIDFS-LMSEEQFLAQNQGRIRITINVPNIDE 1433
                                     KR+++D S L+ E+QFLAQ+ G + I ++VPN+DE
Sbjct: 667  PLPQGVPPPPPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHPGPVCICVSVPNVDE 726

Query: 1434 GNLKGQHLEIVVDDLSETVSSLKEKIAGEVQL 1529
            GNLKGQ LEI V  LSETV SLKEKIAGE+QL
Sbjct: 727  GNLKGQVLEITVQSLSETVGSLKEKIAGEIQL 758


>ref|XP_003534698.1| PREDICTED: probable splicing factor 3A subunit 1-like [Glycine max]
          Length = 806

 Score =  473 bits (1217), Expect = e-131
 Identities = 281/572 (49%), Positives = 343/572 (59%), Gaps = 63/572 (11%)
 Frame = +3

Query: 3    IIKLTAQFVARNGKSLLTGLASREINKPHFQFLKPTNSKYLPFTKYSDVYSKVLMPPMGL 182
            IIKLTAQFVARNGKS LTGL SRE+N P F FLKPT+S +  FT  +D YSKVLMPP GL
Sbjct: 194  IIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGL 253

Query: 183  IDKLR-SVADLATVLEHCLHRLDWERCQEQDKQKAEVEIQQERVQMALIDWHDFYVVETI 359
            ++KL+ SV+D+ TVLE C++RL+W+R QEQ +QKAE EI+QER+QMA+IDWHDF VVETI
Sbjct: 254  MEKLKNSVSDMTTVLERCVNRLEWDRSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETI 313

Query: 360  EFTDDEDAELPPSMTLAEVMSWSNISAMEDQPEVVERGNEAGMXXXXXXXXXXXXGMKAA 539
            +F DDED ELPP MT+ EV+  S ++AME++ ++VE G E  M            GM+AA
Sbjct: 314  DFADDEDQELPPPMTIEEVIRRSKVTAMEEE-DIVEPGKEVEMEMDEEEAQLVEEGMRAA 372

Query: 540  CLEETVWNMSERKAAAPGQPEPPMRIVKSWKRPEDRISAQRNPTKFVASPITGELIPINE 719
             LE+   +  + +      PEPPMRIVK+WKRPE+RISA+R+ TKFV SPITGELIPI+E
Sbjct: 373  SLEDRD-DRKQNEVRVTEDPEPPMRIVKNWKRPEERISAERDSTKFVVSPITGELIPISE 431

Query: 720  MAEHMRISLIDPKFKEQKDRKMAEIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSN 899
            M+EHMRISLIDPK+KEQK+R  A+IRETTLA DDE+  NIVGLARTRPDIFGTTEEEVSN
Sbjct: 432  MSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSN 491

Query: 900  AVKEVIEKKKDEHPTQVIWD---GRTGSTRITANQAMFRNVSEEE--HTDAAN------- 1043
            AVK  IEK  DE P QVIWD   G  G T   A      N  + +  + +A N       
Sbjct: 492  AVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQNIGNEDQNDASNNEARNFLGPAAP 551

Query: 1044 ------SKTRTIP-----------------------WVSAPPRPDLASVHXXXXXXXXXA 1136
                     R +P                           PPRP + S+           
Sbjct: 552  PPRPGMPSVRPLPPPPGLALNLPRVPVQYSAPHSGALPMPPPRPMMPSIRPAPPPPMPMN 611

Query: 1137 F------------------MNLPDRPLPTSPGSHFTRLGGSRSFTXXXXXXXXXXXXXXX 1262
                               MN    P+P  PGSHFT +   R F                
Sbjct: 612  TGQQSVMAGQPPPMHPSIPMNNQGIPIPPPPGSHFTHVPVPRPFVPLSVPQSVMPMMHPP 671

Query: 1263 XXXXXXXXXXXXXXXXXXXXXXS--KRRRIDFS-LMSEEQFLAQNQGRIRITINVPNIDE 1433
                                     KR+++D S L+ E+QFLAQ+ G +RI+++VPN+DE
Sbjct: 672  PLPQGVPPPLPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHPGPVRISVSVPNVDE 731

Query: 1434 GNLKGQHLEIVVDDLSETVSSLKEKIAGEVQL 1529
            GNLKGQ LEI V  LSETV SLKEKIAGE+QL
Sbjct: 732  GNLKGQVLEITVQSLSETVGSLKEKIAGEIQL 763


>ref|XP_002278479.1| PREDICTED: probable splicing factor 3A subunit 1-like [Vitis
            vinifera]
          Length = 814

 Score =  467 bits (1201), Expect = e-129
 Identities = 254/396 (64%), Positives = 291/396 (73%), Gaps = 4/396 (1%)
 Frame = +3

Query: 3    IIKLTAQFVARNGKSLLTGLASREINKPHFQFLKPTNSKYLPFTKYSDVYSKVLMPPMGL 182
            IIKLTAQFVARNGKS LTGL SREIN P F FLKPT+S ++ FT  +D YSKVLMPP GL
Sbjct: 194  IIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFMFFTALADAYSKVLMPPKGL 253

Query: 183  IDKLR-SVADLATVLEHCLHRLDWERCQEQDKQKAEVEIQQERVQMALIDWHDFYVVETI 359
             +KLR SV D+ TVLE CLHRL+WER QEQ +QKAE EI+QER+QMA+IDWHDF VVETI
Sbjct: 254  TEKLRKSVTDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERMQMAMIDWHDFVVVETI 313

Query: 360  EFTDDEDAELPPSMTLAEVMSWSNISAMEDQPEVVERGNEAGMXXXXXXXXXXXXGMKAA 539
            +F DDED +LPP MTL EV+  S ISA E++ E +E G E  M            GM+AA
Sbjct: 314  DFADDEDEDLPPPMTLDEVIRRSKISAAEEE-EFIEPGKEVEMEMDEEEVQLVEEGMRAA 372

Query: 540  CLEETVWNMSERKAA-APGQPEPPMRIVKSWKRPEDRISAQRNPTKFVASPITGELIPIN 716
             LEE   N  ERK A    + EPPMRIVK+WKRPEDRI A+R+PTKF  SPITGELIPIN
Sbjct: 373  SLEE---NDDERKEAKTTEEQEPPMRIVKNWKRPEDRIPAERDPTKFGVSPITGELIPIN 429

Query: 717  EMAEHMRISLIDPKFKEQKDRKMAEIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVS 896
            EM+EHMRISLIDPK+KEQK+R  A+IRETTLA DDE+  NIVGLARTRPDIFGTTEEEVS
Sbjct: 430  EMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVS 489

Query: 897  NAVKEVIEKKKDEHPTQVIWDGRTGSTRITANQAMFRNVSEEEHTDAANSKTRTIPWVSA 1076
            NAVK  IEKKK++ P QVIWDG TGS   TANQAM +N++ E+  DAAN+  RT+P  +A
Sbjct: 490  NAVKAEIEKKKEDQPKQVIWDGHTGSIGRTANQAMTQNLNGEDLNDAANNDARTLPGPAA 549

Query: 1077 --PPRPDLASVHXXXXXXXXXAFMNLPDRPLPTSPG 1178
              PPRP + SV                 RPLP  PG
Sbjct: 550  PPPPRPGVPSV-----------------RPLPPPPG 568



 Score = 94.0 bits (232), Expect = 1e-16
 Identities = 59/133 (44%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
 Frame = +3

Query: 1140 MNLPDRPLPTSPGSHFTRLGGSRSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1319
            +N P+ P+P  PGS F  +   RSF                                   
Sbjct: 639  VNAPNIPVPPPPGSQFMPMPVPRSFVPLPVPPPAMHMIQPPPLPQGVPPPPPPEEAPPPL 698

Query: 1320 XXXS--KRRRIDFSLM-SEEQFLAQNQGRIRITINVPNIDEGNLKGQHLEIVVDDLSETV 1490
                  KR+R+D SL+  E+QFLAQ+ G +RIT++VPN+DEGNLKGQ LEI V  LSETV
Sbjct: 699  PEEPEPKRQRLDDSLLIPEDQFLAQHPGPVRITVSVPNVDEGNLKGQLLEITVQSLSETV 758

Query: 1491 SSLKEKIAGEVQL 1529
             SLKEKIAGEVQL
Sbjct: 759  GSLKEKIAGEVQL 771


>emb|CAN75427.1| hypothetical protein VITISV_003301 [Vitis vinifera]
          Length = 792

 Score =  467 bits (1201), Expect = e-129
 Identities = 254/396 (64%), Positives = 291/396 (73%), Gaps = 4/396 (1%)
 Frame = +3

Query: 3    IIKLTAQFVARNGKSLLTGLASREINKPHFQFLKPTNSKYLPFTKYSDVYSKVLMPPMGL 182
            IIKLTAQFVARNGKS LTGL SREIN P F FLKPT+S ++ FT  +D YSKVLMPP GL
Sbjct: 172  IIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFMFFTALADAYSKVLMPPKGL 231

Query: 183  IDKLR-SVADLATVLEHCLHRLDWERCQEQDKQKAEVEIQQERVQMALIDWHDFYVVETI 359
             +KLR SV D+ TVLE CLHRL+WER QEQ +QKAE EI+QER+QMA+IDWHDF VVETI
Sbjct: 232  TEKLRKSVTDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERMQMAMIDWHDFVVVETI 291

Query: 360  EFTDDEDAELPPSMTLAEVMSWSNISAMEDQPEVVERGNEAGMXXXXXXXXXXXXGMKAA 539
            +F DDED +LPP MTL EV+  S ISA E++ E +E G E  M            GM+AA
Sbjct: 292  DFADDEDEDLPPPMTLDEVIRRSKISAAEEE-EFIEPGKEVEMEMDEEEVQLVEEGMRAA 350

Query: 540  CLEETVWNMSERKAA-APGQPEPPMRIVKSWKRPEDRISAQRNPTKFVASPITGELIPIN 716
             LEE   N  ERK A    + EPPMRIVK+WKRPEDRI A+R+PTKF  SPITGELIPIN
Sbjct: 351  SLEE---NDDERKEAKTTEEQEPPMRIVKNWKRPEDRIPAERDPTKFGVSPITGELIPIN 407

Query: 717  EMAEHMRISLIDPKFKEQKDRKMAEIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVS 896
            EM+EHMRISLIDPK+KEQK+R  A+IRETTLA DDE+  NIVGLARTRPDIFGTTEEEVS
Sbjct: 408  EMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVS 467

Query: 897  NAVKEVIEKKKDEHPTQVIWDGRTGSTRITANQAMFRNVSEEEHTDAANSKTRTIPWVSA 1076
            NAVK  IEKKK++ P QVIWDG TGS   TANQAM +N++ E+  DAAN+  RT+P  +A
Sbjct: 468  NAVKAEIEKKKEDQPKQVIWDGHTGSIGRTANQAMTQNLNGEDLNDAANNDARTLPGPAA 527

Query: 1077 --PPRPDLASVHXXXXXXXXXAFMNLPDRPLPTSPG 1178
              PPRP + SV                 RPLP  PG
Sbjct: 528  PPPPRPGVPSV-----------------RPLPPPPG 546



 Score = 94.0 bits (232), Expect = 1e-16
 Identities = 59/133 (44%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
 Frame = +3

Query: 1140 MNLPDRPLPTSPGSHFTRLGGSRSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1319
            +N P+ P+P  PGS F  +   RSF                                   
Sbjct: 617  VNAPNIPVPPPPGSQFMPMPVPRSFVPLPVPPPAMHMIQPPPLPQGVPPPPPPEEAPPPL 676

Query: 1320 XXXS--KRRRIDFSLM-SEEQFLAQNQGRIRITINVPNIDEGNLKGQHLEIVVDDLSETV 1490
                  KR+R+D SL+  E+QFLAQ+ G +RIT++VPN+DEGNLKGQ LEI V  LSETV
Sbjct: 677  PEEPEPKRQRLDDSLLIPEDQFLAQHPGPVRITVSVPNVDEGNLKGQLLEITVQSLSETV 736

Query: 1491 SSLKEKIAGEVQL 1529
             SLKEKIAGEVQL
Sbjct: 737  GSLKEKIAGEVQL 749


>ref|XP_002528507.1| spliceosome associated protein, putative [Ricinus communis]
            gi|223532067|gb|EEF33876.1| spliceosome associated
            protein, putative [Ricinus communis]
          Length = 816

 Score =  457 bits (1175), Expect = e-126
 Identities = 246/395 (62%), Positives = 287/395 (72%), Gaps = 3/395 (0%)
 Frame = +3

Query: 3    IIKLTAQFVARNGKSLLTGLASREINKPHFQFLKPTNSKYLPFTKYSDVYSKVLMPPMGL 182
            IIKLTAQFVARNG++ LTGL +RE+N P F FLKPT+S Y  FT  +D YS+VLMPP GL
Sbjct: 199  IIKLTAQFVARNGQAFLTGLTNREMNNPQFHFLKPTHSMYKFFTLLADSYSRVLMPPKGL 258

Query: 183  IDKL-RSVADLATVLEHCLHRLDWERCQEQDKQKAEVEIQQERVQMALIDWHDFYVVETI 359
             +KL +SV D+ TVLE CLHRL+WER QEQ +QKAE EI+QER+QMA+IDWH+F VVETI
Sbjct: 259  TEKLIKSVVDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERIQMAMIDWHEFVVVETI 318

Query: 360  EFTDDEDAELPPSMTLAEVMSWSNISAMEDQPEVVERGNEAGMXXXXXXXXXXXXGMKAA 539
            +F DDED +LPP MTL EV+  S I+ M +  E+VE G E  M            GM+AA
Sbjct: 319  DFADDEDEDLPPPMTLEEVVRRSKITTMTED-EIVEPGKEVEMEMDEEEVQLVEEGMRAA 377

Query: 540  CLEETVWNMSERKAAAPGQPEPPMRIVKSWKRPEDRISAQRNPTKFVASPITGELIPINE 719
             LEE   N SER      +PE PMRIVK+WKRPE+RI A+R+PTK V SPITGELIPINE
Sbjct: 378  SLEE---NDSERDRKMNEEPEEPMRIVKNWKRPEERIPAERDPTKVVISPITGELIPINE 434

Query: 720  MAEHMRISLIDPKFKEQKDRKMAEIRETTLAHDDEMVSNIVGLARTRPDIFGTTEEEVSN 899
            M+EHMRISLIDPK+KEQK+R  A+IRETTLA DDE+  NIVGLARTRPDIFGTTEEEVSN
Sbjct: 435  MSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSN 494

Query: 900  AVKEVIEKKKDEHPTQVIWDGRTGSTRITANQAMFRNVSEEEHTDAANSKTRTIPWVSAP 1079
            AVK  IEKKKDE P QVIWDG TGS   TANQAM +N++ E+ ++A N   RT+P  +AP
Sbjct: 495  AVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQAMSQNINGEDQSEAVNVDGRTLPGPAAP 554

Query: 1080 P--RPDLASVHXXXXXXXXXAFMNLPDRPLPTSPG 1178
            P  RP L SV                 RPLP  PG
Sbjct: 555  PPLRPGLPSV-----------------RPLPPPPG 572



 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 46/67 (68%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
 Frame = +3

Query: 1332 KRRRIDFS-LMSEEQFLAQNQGRIRITINVPNIDEGNLKGQHLEIVVDDLSETVSSLKEK 1508
            KR+R+D S L+ E+QFLAQ+ G +RIT++VPN+DEGNLKGQ LEI V  LSE V+SLKEK
Sbjct: 707  KRQRLDDSMLIPEDQFLAQHPGPVRITVSVPNVDEGNLKGQVLEITVQSLSENVASLKEK 766

Query: 1509 IAGEVQL 1529
            IAGE+QL
Sbjct: 767  IAGEIQL 773