BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006761
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...   103   1e-20
ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containi...    96   4e-18
ref|XP_002879744.1| pentatricopeptide repeat-containing protein ...    91   1e-16
ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16

>ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
           gi|449483740|ref|XP_004156675.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
          Length = 491

 Score =  105 bits (261), Expect = 5e-21
 Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
 Frame = +3

Query: 84  TLLNNTGNLLRKRRKWGQSLTPYKGKWQQTFNQQQAMEALKKAANNDEKPLV-SVLVNSF 260
           +++  + N LRK RKW   L+ +K KW QTF+Q +A+  LK+AAN D+  L+ S LV SF
Sbjct: 6   SVVKKSNNFLRKHRKW--PLSSHKTKWHQTFDQDEALRILKQAANPDQPHLLLSALVTSF 63

Query: 261 EMYACEPTPYAYSFVVKSLFKSSQLDQLPCVLDHMR-NERFEPPERIFVEIIRIYGCEN 434
             Y+C PTP AY FV+K+L ++SQ   +P VL  ++  E F+ PE IFV++I++YG  N
Sbjct: 64  TAYSCHPTPNAYYFVLKTLARTSQFHHIPPVLHRLQFLENFQTPEYIFVDLIKLYGRMN 122


>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
           predicted protein [Populus trichocarpa]
          Length = 506

 Score =  103 bits (257), Expect = 1e-20
 Identities = 55/116 (47%), Positives = 74/116 (63%), Gaps = 8/116 (6%)
 Frame = +3

Query: 111 LRKRRKWGQSLTPYKGKWQQTFNQQQAMEALKKAA------NNDEKP-LVSVLVNSFEMY 269
           LRK RKW  S  PYK +W + FNQQQAM++LK++A       +  KP L+S L++SF +Y
Sbjct: 14  LRKHRKWPYS--PYKARWHRIFNQQQAMQSLKQSALKPPQQESPNKPHLLSSLIHSFSIY 71

Query: 270 ACEPTPYAYSFVVKSLFKSSQLDQLPCVLDHMRN-ERFEPPERIFVEIIRIYGCEN 434
             EP P A+ F+ K+L K+SQ   +P VLDH+   E FEPPE  F  +I +YG  N
Sbjct: 72  DVEPAPKAFDFIFKTLVKTSQFHHIPSVLDHLEKVESFEPPESTFAYLIEVYGRTN 127


>ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Vitis vinifera]
          Length = 505

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 51/119 (42%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
 Frame = +3

Query: 105 NLLRKRRKWGQSLTPYKGKWQQTFNQQQAMEALKKA-ANNDEKP-------LVSVLVNSF 260
           N LRKRRKW   L+PYK  W +TF+ +QAM+ LK   AN    P        +S+L++SF
Sbjct: 11  NFLRKRRKW--PLSPYKATWHETFHHRQAMQTLKNTIANQSPSPQSPSNSQFLSILIDSF 68

Query: 261 EMYACEPTPYAYSFVVKSLFKSSQLDQLPCVLDHMRN-ERFEPPERIFVEIIRIYGCEN 434
            +Y  +PTP AY FV+ +L +  Q   LP +L  +   E+FE PE IF  +I++YG  N
Sbjct: 69  RIYNSDPTPNAYRFVISTLTRCRQFHHLPPLLHRLEKVEKFETPEFIFTNLIKVYGNAN 127


>ref|XP_002879744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325583|gb|EFH56003.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 444

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 3/110 (2%)
 Frame = +3

Query: 105 NLLRKRRKWGQSLTPYKGKWQQTFNQQQAMEALKK--AANNDEKPLVSVLVNSFEMYACE 278
           N +RK RK  QS   +K KW +   Q+ AME L+    A+++   ++  LV+SF+++ CE
Sbjct: 3   NFMRKYRKIPQS--SFKTKWNENLKQKYAMEELRSNLLADSENGSVMRTLVSSFQLHNCE 60

Query: 279 PTPYAYSFVVKSLFKSSQLDQLPCVLDHMR-NERFEPPERIFVEIIRIYG 425
           PTP AY FV+++L K+SQL+ +  VLDH+  +E+F+ PE IF ++I  YG
Sbjct: 61  PTPQAYRFVIETLAKTSQLENIASVLDHLEVSEKFDTPESIFRDVIAAYG 110


>ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Glycine max]
          Length = 499

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 52/126 (41%), Positives = 75/126 (59%), Gaps = 13/126 (10%)
 Frame = +3

Query: 87  LLNNTGNLLRKRRKWGQSLTPYKGKWQQTFNQQQAMEALKKA------ANNDEKP----- 233
           L       LRK +KW  S  PYK  W   F ++QAM+ LK+A      + + ++P     
Sbjct: 6   LSKRANKYLRKFKKWPHS--PYKTSWHHNFGEEQAMKNLKQATLEMDSSQHPQRPNLPCP 63

Query: 234 -LVSVLVNSFEMYACEPTPYAYSFVVKSLFKSSQLDQLPCVLDHMRN-ERFEPPERIFVE 407
            L+S L++SF+ Y+ +PTP AY FV+K+L  +SQL  +P VL H+ + E+FE PE I V 
Sbjct: 64  FLLSTLLDSFKAYSIDPTPKAYFFVLKTLTSTSQLQDIPPVLYHLEHLEKFETPESILVY 123

Query: 408 IIRIYG 425
           +IR YG
Sbjct: 124 LIRFYG 129