BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006755
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   120   6e-25
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...   107   3e-21
ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|2...   102   2e-19
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...   100   7e-19
ref|XP_003534732.1| PREDICTED: F-box protein CPR30-like [Glycine...    96   2e-17

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score =  120 bits (300), Expect = 6e-25
 Identities = 94/289 (32%), Positives = 147/289 (50%), Gaps = 11/289 (3%)
 Frame = -1

Query: 961 SYEINIMGSCNGLLCLSKRGNKRRNINIFNPITGEHQQLPHCTLPNNCKRI------TKY 800
           ++ I ++GS NGLLC+S   N   +I ++NP T +H+ +P   LP   KR       + Y
Sbjct: 93  NHGIKVLGSVNGLLCIS---NVVDDIAVWNPSTRKHRVVPF--LPIELKRYFGTKSCSVY 147

Query: 799 MSGFGYDVSMQQFKMVLLLFYRPFKSINVQKEVQVYTLGSKDWRRKIGNVPNLSFPNYYF 620
           + GFGYD     +K+V +  +      + + EV+VY+L  + WRR IG++P        +
Sbjct: 148 VFGFGYDSVRDDYKLVRIAQFGGGGKRSFESEVKVYSLRKQSWRR-IGDMP--------Y 198

Query: 619 PKYYVHVSFVFANGSLHWIAIDNTSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLK 440
             +Y   + VFANG+LHW+  +N  SN  + +V+  LGVE++     P+   +N      
Sbjct: 199 CVHYPGANGVFANGALHWVVGENPESNVANIVVALDLGVEDYREVLQPEYKDKNF----- 253

Query: 439 YWALGVXXXXXXXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVR--DPLVSHRLVRPIQVL 266
           Y  LGV             + VD W+ K+   K SW KLFSV   + +   R ++P+   
Sbjct: 254 YIDLGVLRGCLCFLANFLGERVDVWMMKEYGVKESWTKLFSVAQYEVIGFLRSLKPLAYS 313

Query: 265 KNG-EILLTRAFPCLVAYNTNSKEF--RLIEVPLGSFEPIPFVATLISV 128
           K+G E+L+      L  Y+   K+   R+  +P  SFE   FV +LISV
Sbjct: 314 KSGDEVLIEHDNLDLCWYDLKRKQVKNRIPGIPY-SFEADTFVESLISV 361


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score =  107 bits (268), Expect = 3e-21
 Identities = 79/264 (29%), Positives = 129/264 (48%), Gaps = 9/264 (3%)
 Frame = -1

Query: 961 SYEINIMGSCNGLLCLSKRGNKRRNINIFNPITGEHQQLPHCTLPNNCKRITKYMS---- 794
           ++ + I+GSCNGLLC+    N   +I ++NP    H+ +P+  LP   KR     S    
Sbjct: 86  NHGVKILGSCNGLLCIC---NIVDDIALWNPSIRAHRVVPY--LPVELKRYFGMCSCRVS 140

Query: 793 --GFGYDVSMQQFKMVLLLFYRPFKSINVQKEVQVYTLGSKDWRRKIGNVPNLSFPNYYF 620
             GFGYD+S   +K+V +  +      + + EV+V++L    WRR I ++P        +
Sbjct: 141 VFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEVKVFSLRKNSWRR-IADMP--------Y 191

Query: 619 PKYYVHVSFVFANGSLHWIAIDNTSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLK 440
              Y   + ++ANG+LHW+   +  S     IV+  LGVE++ V P P+ +  N +    
Sbjct: 192 CVLYPGENGIYANGALHWLVSQDPDSTVADTIVALDLGVEDYHVVPKPEFVDMNCN---- 247

Query: 439 YWALGVXXXXXXXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVR--DPLVSHRLVRPIQVL 266
              +GV             + VD WV ++   K SW+KLFSV   + +   R ++P+   
Sbjct: 248 -MGVGVLQGCLSLLAYARSERVDVWVMEEYMVKESWSKLFSVARLEVIGILRSLKPLAYS 306

Query: 265 KNG-EILLTRAFPCLVAYNTNSKE 197
           K+G E+L+      L  Y+   KE
Sbjct: 307 KSGNEVLIEHDNVNLFWYDLKRKE 330


>ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|222833916|gb|EEE72393.1|
           predicted protein [Populus trichocarpa]
          Length = 477

 Score =  102 bits (253), Expect = 2e-19
 Identities = 81/295 (27%), Positives = 127/295 (43%), Gaps = 7/295 (2%)
 Frame = -1

Query: 946 IMGSCNGLLCLSKRGNKRRNINIFNPITGEHQQLPHCTLPNNCKRITKYM-SGFGYDVSM 770
           I+ +CNGL+C+ +  +   +I+I NP+ G++      TLP   K+   Y+ S FG+    
Sbjct: 131 IVNTCNGLICI-RHFHSPNDISILNPLVGDY-----ITLPLTKKKHKSYVFSWFGHSPKT 184

Query: 769 QQFKMVLLLFYRPFKSINVQKEVQVYTLGSKDWRRKIGNVPNLSFPNYYFPKYYVHVSFV 590
            ++K++  +  +P K      E +++TLG   W    G   +        P   +     
Sbjct: 185 DEYKVIQFV-QQPSKL-----EAEIHTLGKGTWTSIHGGALS--------PPIDMRCHNA 230

Query: 589 FANGSLHWIAIDNTSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXXXX 410
           F  G LHWI  D + S     I     G E F     P  +G N  D      LGV    
Sbjct: 231 FVGGCLHWIVNDPSKSE---FIYCLEFGRELFQPVAAPPHLGPNDKDRTGDMMLGVLGGC 287

Query: 409 XXXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVRDPLVS----HRLVRPIQVLKNGEILLT 242
                       D WV K    + SW K F +++P         L RPI +L NGEIL++
Sbjct: 288 LYFFDYPLGDSFDIWVMKQYGVQESWTKEFILKNPSTDIIWYWDLYRPISLLSNGEILMS 347

Query: 241 RAFPCLVAYNTNSKEFRLIEV-PLGSFEPIPFVATLISVISAF-GMNSDGEKLSC 83
                +V+YN   + FR +++  + +FE  P+V + +S      G N+D     C
Sbjct: 348 HKSKAMVSYNPEDRSFRFLKIYGIQNFEANPYVPSFLSPREIVKGENTDSNSFLC 402


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score =  100 bits (248), Expect = 7e-19
 Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 27/290 (9%)
 Frame = -1

Query: 967 SLSYEINIMGSCNGLLCLSKRGNKRRNINIFNPITGEHQQLPHCT-LPNNCKRITKYMSG 791
           S+  E  ++GSCNGLLCLS       ++ I+NP TG +++LP     P+      + + G
Sbjct: 116 SMMPEFEVVGSCNGLLCLSD-SLFNDSLYIYNPFTGRYKELPKSLQYPDQ-----EVVFG 169

Query: 790 FGYDVSMQQFKMVLLLFYR--------PFKSINVQKEVQVYTLGSKDWRRKIGNVPNLSF 635
           FG++    ++K++ +++YR          + I    +VQ+ TLG   WR  +G V     
Sbjct: 170 FGFNPKTNEYKVIRIVYYRNGHGRYPRSRRIIYPLSQVQILTLGCPGWR-SLGKV----- 223

Query: 634 PNYYFPKYYVHVSFVFANGSLHWIAIDNTSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNS 455
            +Y   +     S    NG LHW++     + P  R+VSF L  E+F   P PD  G N 
Sbjct: 224 -SYRLVR---RASETLVNGRLHWVSRP-CRNKPARRLVSFDLTDEQFREVPKPDCGGLNR 278

Query: 454 DDPLKYWALGVXXXXXXXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVRDPL---VSHRLV 284
            D    + L V               ++ WV K+ + K SW K +++   +   +   LV
Sbjct: 279 CD----YHLAVLRGCLSVAVYCNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLV 334

Query: 283 RPIQ---------------VLKNGEILLTRAFPCLVAYNTNSKEFRLIEV 179
           RP++               VLKNGEILL      LV+Y+    +F+ I++
Sbjct: 335 RPLKIWKNASNGRAVRALCVLKNGEILLEYKNRALVSYDPKKGKFKDIDL 384


>ref|XP_003534732.1| PREDICTED: F-box protein CPR30-like [Glycine max]
          Length = 392

 Score = 95.5 bits (236), Expect = 2e-17
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 8/269 (2%)
 Frame = -1

Query: 961 SYEINIMGSCNGLLCLSKRGNKRRNINIFNPITGEHQQLPHCTLPN-----NCKRITKYM 797
           S  I ++GSCNGLLC+S   N   +I  +NP   +H+ LP   LP      +       +
Sbjct: 88  SNNITLLGSCNGLLCIS---NVADDIAFWNPSLRQHRILPSLPLPRRRLHPDTTLFAARV 144

Query: 796 SGFGYDVSMQQFKMVLLLFYRPFKSINVQKEVQVYTLGSKDWRRKIGNVPNLSFPNYYFP 617
            GFG+D +   +K+V + ++   +  +   +V++YTL +  W+         + P+  + 
Sbjct: 145 YGFGFDHTSPDYKLVRISYFVDLQDRSFDSQVKLYTLRANAWK---------TLPSMPYA 195

Query: 616 KYYVHVSFVFANGSLHWIAIDNTSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKY 437
                   VF   SLHW+       +    IV+F L  E FT  P PD+ G      +  
Sbjct: 196 LCCARTMGVFVGNSLHWVVTRKLEPDQPDLIVAFDLTHEIFTELPLPDTGGVGGGFEIDV 255

Query: 436 WALGVXXXXXXXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVRD--PLVSHRLVRPIQVLK 263
             LG                +D WV ++ +   SW KLF++ +   L S + +RP+    
Sbjct: 256 ALLG---DSLCMTVNFHNSKMDVWVMREYNRGDSWCKLFTLEESRELRSFKCLRPLGYSS 312

Query: 262 NG-EILLTRAFPCLVAYNTNSKEFRLIEV 179
           +G ++LL      L  Y+   KE  L+ +
Sbjct: 313 DGNKVLLEHDRKRLCWYDLGKKEVTLVRI 341