BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00006754
         (584 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003542905.1| PREDICTED: putative E3 ubiquitin-protein lig...   115   7e-24
ref|XP_002516824.1| conserved hypothetical protein [Ricinus comm...   109   3e-22
ref|XP_002277269.1| PREDICTED: putative E3 ubiquitin-protein lig...   105   4e-21
ref|XP_003546114.1| PREDICTED: putative E3 ubiquitin-protein lig...   105   7e-21
ref|XP_003550520.1| PREDICTED: putative E3 ubiquitin-protein lig...    93   3e-17

>ref|XP_003542905.1| PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Glycine
           max]
          Length = 883

 Score =  115 bits (287), Expect = 7e-24
 Identities = 62/140 (44%), Positives = 88/140 (62%)
 Frame = -2

Query: 421 SIFKAGSSGILATIVVQETGSRNKRKFLSDLPLIDPNEAPGSPPHYVCVGNEFSGEELQD 242
           S+  +GSS +  ++ VQE GSRNKRKF +D PL +PN+   SP H   + NEFS E+ + 
Sbjct: 3   SLVASGSSQMAPSVSVQEKGSRNKRKFRADPPLGEPNKIIPSPQHE-SLSNEFSAEKFEI 61

Query: 241 IAIHDQYGLCDMCGCSRDDPDGSKVELLLSGPTNLPDVESSRPGRKLEPEKLQGTEWNEL 62
              H Q    DMC  S+D  DG K++L LS P    DV  S+P  +LE ++    +W++L
Sbjct: 62  TTGHGQASASDMCSVSQDHSDGLKLDLGLSSPLPSSDVRLSQPKEELEVDEFHDADWSDL 121

Query: 61  SEDQLEELCMNSLDLIFRSA 2
           +E QLEEL +++LD IF+SA
Sbjct: 122 TEAQLEELVLSNLDTIFKSA 141


>ref|XP_002516824.1| conserved hypothetical protein [Ricinus communis]
           gi|223543912|gb|EEF45438.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 894

 Score =  109 bits (273), Expect = 3e-22
 Identities = 56/134 (41%), Positives = 86/134 (64%)
 Frame = -2

Query: 403 SSGILATIVVQETGSRNKRKFLSDLPLIDPNEAPGSPPHYVCVGNEFSGEELQDIAIHDQ 224
           S+ + + + VQE GSRNKRKF +D PL DP +   SP +  C G EFS E+ +    H  
Sbjct: 14  STQVSSLVSVQEKGSRNKRKFRADTPLGDPGKIIPSPQNE-CSGYEFSAEKFEATPAHGP 72

Query: 223 YGLCDMCGCSRDDPDGSKVELLLSGPTNLPDVESSRPGRKLEPEKLQGTEWNELSEDQLE 44
             +CD+CG ++D  +G K++L LS   +  +V +S+P  +LE E+    +W++L+E QLE
Sbjct: 73  SSVCDLCGVNQDHSEGLKLDLGLSSALSSSEVGTSQPREELESEESHDADWSDLTESQLE 132

Query: 43  ELCMNSLDLIFRSA 2
           EL +++LD IF+SA
Sbjct: 133 ELVLSNLDAIFKSA 146


>ref|XP_002277269.1| PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Vitis
           vinifera]
          Length = 893

 Score =  105 bits (263), Expect = 4e-21
 Identities = 55/128 (42%), Positives = 79/128 (61%)
 Frame = -2

Query: 385 TIVVQETGSRNKRKFLSDLPLIDPNEAPGSPPHYVCVGNEFSGEELQDIAIHDQYGLCDM 206
           ++  QE GSRNKRKF +D PL DPN+   S     C+  EFS E+ +  + H Q G C M
Sbjct: 19  SVSAQEKGSRNKRKFRADPPLGDPNKIVSSQDQ--CLSYEFSAEKFEVTSSHGQPGACGM 76

Query: 205 CGCSRDDPDGSKVELLLSGPTNLPDVESSRPGRKLEPEKLQGTEWNELSEDQLEELCMNS 26
           C  ++D  DG K++L LS      +V  S+P  +LE +  Q  +W++L+E QLEEL +++
Sbjct: 77  CNLNQDHSDGLKLDLGLSSAAGSSEVGPSQPRDELEADDFQDADWSDLTESQLEELVLSN 136

Query: 25  LDLIFRSA 2
           LD IF+SA
Sbjct: 137 LDTIFKSA 144


>ref|XP_003546114.1| PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Glycine
           max]
          Length = 855

 Score =  105 bits (261), Expect = 7e-21
 Identities = 58/140 (41%), Positives = 84/140 (60%)
 Frame = -2

Query: 421 SIFKAGSSGILATIVVQETGSRNKRKFLSDLPLIDPNEAPGSPPHYVCVGNEFSGEELQD 242
           S+  +GSS +  ++ VQE GSRNKRKF +D PL +PN+    P H   +  EFS E+ + 
Sbjct: 3   SLVASGSSQMAPSVSVQEKGSRNKRKFRADPPLGEPNKIIPLPQHE-SLSYEFSAEKFEI 61

Query: 241 IAIHDQYGLCDMCGCSRDDPDGSKVELLLSGPTNLPDVESSRPGRKLEPEKLQGTEWNEL 62
              H Q     MC  S+D  D  K++L LS P    DV  S+P  +LE ++    +W++L
Sbjct: 62  TPGHGQVSASGMCSVSQDHSDALKLDLGLSSPVASSDVRISQPKEELEVDEFHDADWSDL 121

Query: 61  SEDQLEELCMNSLDLIFRSA 2
           +E QLEEL +++LD IF+SA
Sbjct: 122 TEAQLEELVLSNLDTIFKSA 141


>ref|XP_003550520.1| PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Glycine
           max]
          Length = 877

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 52/124 (41%), Positives = 75/124 (60%)
 Frame = -2

Query: 373 QETGSRNKRKFLSDLPLIDPNEAPGSPPHYVCVGNEFSGEELQDIAIHDQYGLCDMCGCS 194
           QE GSRNKRKF +D PL +PN+   +P    C+  EFS E+ +    H Q   CD+CG S
Sbjct: 8   QEKGSRNKRKFRADPPLGEPNKFIPAP-QLECLSYEFSAEKFEITPGHRQVAACDLCGLS 66

Query: 193 RDDPDGSKVELLLSGPTNLPDVESSRPGRKLEPEKLQGTEWNELSEDQLEELCMNSLDLI 14
           +D  DG K+ L L  P    +V  S+   K E +++   +W++L+E QLEEL + +LD+I
Sbjct: 67  QDHSDGLKLGLGLYSP-GTSEVGPSQSKDKPETDEINDADWSDLTEAQLEELVLTNLDII 125

Query: 13  FRSA 2
            +SA
Sbjct: 126 LKSA 129